LOC120567774 (LOC104956512)


Basic Information

Item Value
gene id LOC120567774
gene name LOC104956512
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19947240 ~ 19956332 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814792.1
ACCCACTCGCCACCTCATGCAGCTGCTCACAGGAGAGCCATTAATTAGTCACGGAAAAGAAAGCATTTTGAGCCAGACTGTTTCAACGTAGATATAGAAACAGGAACGGAGAAATGCCCGTAGTGAAtacattattattcttttttaaggtctgctcgacctaattgcatttcaacataatacatttacaccaaacctacagtaggcctaggcCTAGCTAGGCCACGCGCAGAACAttcattgtatgttatttcataagtgaaagaatggcttttgttgtggatttgctttacTCTGAGCTCGAAGAGAGACTTGACTCGCTCGTCTCTGAATGAATCCGATCCACTCATGGTGACCACGTAGCCGGCTGATAAGCGGGACTGACTGACTCGCGCGAGCATcgacaactcacgagtcatcgagTGGACCGCGAGCTTCCGACTCTGAGTGTGCGGGTTCTCTTCTTCCATGGTCGGATAACCTGTCtcggactgtctctctgctcactcaggcgCTTGTGGATTTGTTACCCTGTTgcctacgaaattgtaagttataaagccttttgcagctaagatggctaggactagtagtagctaatgttgcaagaggtttgtgtgtggcgctgttatcattttagattgaattgtaggaGGACTCACCTGAACAGGGTTAAAGATACTAGAGACTCGCGTTTCGTGATTCAATTTAAAAACTCTGGTTAAAGAGCCGAGTTTatcacgactcaaacaggtgTAGGTGAAACCTGAGAAGCTGTAATCAGCACACCTGTTCGCTACGCCCATCTTTGTCCCTTCCCGTTTCTGTTCGGAGTGTATAGGAAATGGCTGCAGCAACTATTTCTATTGAACAAGACCAGTTTTGTTGTTCAGTGTGCCTGGAGGTTTTAAGAGACCCGGTGACGAttccctgtggacacagctactgctTGGACTGCATTGAAGATTACTGGACAAAGGTCAAGCAGAAAGGCCAGTACAGCTGCCCACAGTGCAGGCAGGTGTTTAATCCCAGGCCTCTGCTGAGTAGAAACACAGTTCTGGGCGAAGTGGTGGAAAAGTTTCAGAGATCTGGATTTCAAGACGCAGCTCGACACTTGGCCAAACCCGAGGAAGCGAAATGCAGTGTTTGCACATTGAGAAAAAGCAAAGCTGTAAAATCCTGCCTTGTGTGCTCCGAGTCTTACTGTGCTGTTCACTTGAGAGTCCACGAAGAACGCTTTCATGGGAAGGTCCATAAATTGGTCCCAGCCGTGGATCAGCTGAGGGAGAAGCTGTGCCCACATCATGATAAATCCCTGAGGCTGTACTGTCGCACTgaccagcagtgtgtgtgttcccagtgTGTCAAAGAGAAACACAAGGGCCATGATGCAGTCTCAGTGGTGGATGAGAGAGCAACACAACAGAAAAAACTCCAAGAAGCCTCTTTGAAGTCTGTGCAGAAATTGAAGGACACGGAGAAGGAACTTAGATACGTTGTCCGATACATTAAGCACTCGACGGAAGCAGCAGTGGAGGAGAGCGAGAGGGTTTTCTCCAAGTTGATCCGCTCCATAGAGAAACAAAGCAGTGAGGTGAAGGAGGTGATGAGAGTCCAGGAGAGAGCAGCTGTCAGTCAGGCCGAGGAGCTGCTGGAGAAGATCCAGAGGGACGTAACCGAGCTCAGGAGGACCGGTGCTGAGCTGGAGAAGCTTTCTGGCACTGAGAACCACATCCACTTTCTTCAGAAGTGCAAGTCTCTTCATTTCCCTACAAAGACTGTGGAGATGCCCAGCACTGATGCACTTCAATATTTGATGTATAAAACCATGAGAGGAGCCCTAGCTGATCTCAAAGACAGTCTGGATGAAACACTTGAAAGAGAATTCAACAGGATCTCTGATAAAGTCATTTCACTGAAGGAGACCAGCAATCAAAGTACCTCTGAAAAGACTAAAGTCATTTCACTGAAGGAGACCAGCAATCAAAGTACCTCTGAAAAGACTAAAGTAAAAGACACTGAGGTACCATACAACTCAGAACCGAAGACAAGAGCTGATTATCTACAATATTACAACGATATAACCCTGGACCTGAACACAGCCAACCCTTATCTAAGCTTCTCTGACGGTCAAAGAGAGGTGACCACACGTTCGGAGCCACAGCCATACCCGGACCATCCGCATCGCTTCACCAGCTGGGCCCAGGTGCTGTGCAGAGCTGGGATGGCTGGACGCTGCTACTGGGAGGTAGAGTGGGCTGGTAAAGGAGGGGTTTCCATCGGCGTCTGCTACAAAACCATGGGCAGGAGTGGAGCAGGGAGCGACTGTAAGCTTGGACACAACTCCAAATCCTGGAGCCTGGACTGCTCTTACTCAGTCTGTTCATTTCAGCACAATAAGGAGGGTTTGACCATCGCTGCTCCGTGCTGCAGCAGGATAGGCGTGTATCTGGACTTCAGGGGTGGGACTTTGTCTTTCTATAATGTTTCTGATACAAGGGTTTTACTCCATAAAGTCAAGACTACATTCACCCAGCCTGTATACCCAGGATTTTGGGTGGGTTTGAGCTCTACTTTGAGGCTGTGCTCTCTTTAAATGAAATGACTGCACTCCATCAACGGTTCTCAAGTAACTTTGTAAATATGGGGTTCAAAATATTAATGTTGACTGAGAATAATAATGAAACTGAGACCGAGGtttgtgtttaaaatgtttattttaataacCGTGCAACTTGGGAACAGCAGCAACACTTTGGTGCGGTAGGTAACAAGCTTATTGAAGGCAGCATCATCCACATCCTGGATCTGCAAAGGAAGACATTTTCATAAACTCAACGATCTATATTTGTTTGAGCACATTTATGTAATAATATAGGGATTTGTTGTGCATCAAATCCAATTGTAAATAAACAATTTGTTCATTCTG
>XM_039814793.1
GCACACCCACTCGCCACCTCATGCAGCTGCTCACAGGAGAGCCATTAATTAGTCACGGAAAAGAAAGCATTTTGAGCCAGACTGTTTCAACGTAGATATAGAAACAGGAACGGAGAAATGCCCGTAGTGAAtacattattattcttttttaaggtctgctcgacctaattgcatttcaacataatacatttacaccaaacctacagtaggcctaggcCTAGCTAGGCCACGCGCAGAACAttcattgtatgttatttcataagtgaaagaatggcttttgttgtggatttgctttacTCTGAGCTCGAAGAGAGACTTGACTCGCTCGTCTCTGAATGAATCCGATCCACTCATGGTGACCACGTAGCCGGCTGATAAGCGGGACTGACTGACTCGCGCGAGCATcgacaactcacgagtcatcgagTGGACCGCGAGCTTCCGACTCTGAGTGTGCGGGTTCTCTTCTTCCATGGTCGGATAACCTGTCtcggactgtctctctgctcactcaggcgCTTGTGGATTTGTTACCCTGTTgcctacgaaattgtaagttataaagccttttgcagctaagatggctaggactagtagtagctaatgttgcaagaggtttgtgtgtggcgctgttatcattttagattgaattgtaggaGGACTCACCTGAACAGGGTTAAAGATACTAGAGACTCGCGTTTCGTGATTCAATTTAAAAACTCTGGTTAAAGAGCCGAGTTTatcacgactcaaacaggtgTAGGTGAAACCTGAGAAGCTGTAATCAGCACACCTGTTCGCTACGCCCATCTTTGTCCCTTCCCGTTTCTGTTCGGAGTGTATAGGAAATGGCTGCAGCAACTATTTCTATTGAACAAGACCAGTTTTGTTGTTCAGTGTGCCTGGAGGTTTTAAGAGACCCGGTGACGAttccctgtggacacagctactgctTGGACTGCATTGAAGATTACTGGACAAAGGTCAAGCAGAAAGGCCAGTACAGCTGCCCACAGTGCAGGCAGGTGTTTAATCCCAGGCCTCTGCTGAGTAGAAACACAGTTCTGGGCGAAGTGGTGGAAAAGTTTCAGAGATCTGGATTTCAAGACGCAGCTCGACACTTGGCCAAACCCGAGGAAGCGAAATGCAGTGTTTGCACATTGAGAAAAAGCAAAGCTGTAAAATCCTGCCTTGTGTGCTCCGAGTCTTACTGTGCTGTTCACTTGAGAGTCCACGAAGAACGCTTTCATGGGAAGGTCCATAAATTGGTCCCAGCCGTGGATCAGCTGAGGGAGAAGCTGTGCCCACATCATGATAAATCCCTGAGGCTGTACTGTCGCACTgaccagcagtgtgtgtgttcccagtgTGTCAAAGAGAAACACAAGGGCCATGATGCAGTCTCAGTGGTGGATGAGAGAGCAACACAACAGAAAAAACTCCAAGAAGCCTCTTTGAAGTCTGTGCAGAAATTGAAGGACACGGAGAAGGAACTTAGATACGTTGTCCGATACATTAAGCACTCGACGGAAGCAGCAGTGGAGGAGAGCGAGAGGGTTTTCTCCAAGTTGATCCGCTCCATAGAGAAACAAAGCAGTGAGGTGAAGGAGGTGATGAGAGTCCAGGAGAGAGCAGCTGTCAGTCAGGCCGAGGAGCTGCTGGAGAAGATCCAGAGGGACGTAACCGAGCTCAGGAGGACCGGTGCTGAGCTGGAGAAGCTTTCTGGCACTGAGAACCACATCCACTTTCTTCAGAAGTGCAAGTCTCTTCATTTCCCTACAAAGACTGTGGAGATGCCCAGCACTGATGCACTTCAATATTTGATGTATAAAACCATGAGAGGAGCCCTAGCTGATCTCAAAGACAGTCTGGATGAAACACTTGAAAGAGAATTCAACAGGATCTCTGATAAAGTCATTTCACTGAAGGAGACCAGCAATCAAAGTACCTCTGAAAAGACTAAAGTAAAAGACACTGAGGTACCATACAACTCAGAACCGAAGACAAGAGCTGATTATCTACAATATTACAACGATATAACCCTGGACCTGAACACAGCCAACCCTTATCTAAGCTTCTCTGACGGTCAAAGAGAGGTGACCACACGTTCGGAGCCACAGCCATACCCGGACCATCCGCATCGCTTCACCAGCTGGGCCCAGGTGCTGTGCAGAGCTGGGATGGCTGGACGCTGCTACTGGGAGGTAGAGTGGGCTGGTAAAGGAGGGGTTTCCATCGGCGTCTGCTACAAAACCATGGGCAGGAGTGGAGCAGGGAGCGACTGTAAGCTTGGACACAACTCCAAATCCTGGAGCCTGGACTGCTCTTACTCAGTCTGTTCATTTCAGCACAATAAGGAGGGTTTGACCATCGCTGCTCCGTGCTGCAGCAGGATAGGCGTGTATCTGGACTTCAGGGGTGGGACTTTGTCTTTCTATAATGTTTCTGATACAAGGGTTTTACTCCATAAAGTCAAGACTACATTCACCCAGCCTGTATACCCAGGATTTTGGGTGGGTTTGAGCTCTACTTTGAGGCTGTGCTCTCTTTAAATGAAATGACTGCACTCCATCAACGGTTCTCAAGTAACTTTGTAAATATGGGGTTCAAAATATTAATGTTGACTGAGAATAATAATGAAACTGAGACCGAGGtttgtgtttaaaatgtttattttaataacCGTGCAACTTGGGAACAGCAGCAACACTTTGGTGCGGTAGGTAACAAGCTTATTGAAGGCAGCATCATCCACATCCTGGATCTGCAAAGGAAGACATTTTCATAAACTCAACGATCTATATTTGTTTGAGCACATTTATGTAATAATATAGGGATTTGTTGTGCATCAAATCCAATTGTAAATAAACAATTTGTTCATTCTG

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814792.1 True 2932 mRNA 0.46 8 19947240 19956328
XM_039814793.1 False 2885 mRNA 0.47 7 19947240 19956332

Neighbor

gene id symbol gene type direction distance location
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding downstream 30377 19882902 ~ 19916863 (-)
LOC120567744 NA coding downstream 155337 19789625 ~ 19791903 (-)
tcea1 tcea1 coding downstream 345768 19593467 ~ 19601472 (-)
atp6v1h atp6v1h coding downstream 373953 19542850 ~ 19573287 (-)
oprk1 LOC104917759,LOC105937811,LOC103479830,LOC108232774 coding downstream 415010 19528163 ~ 19532230 (-)
ftr67 LOC104956513 coding upstream 448 19956780 ~ 19962763 (-)
LOC120567785 LOC103359745,LOC104917727,LOC103396371,LOC104956511,LOC102292405 coding upstream 7494 19963826 ~ 19967558 (-)
LOC120567783 LOC102292715,LOC100691961,LOC101465604,LOC102195716 coding upstream 12084 19968416 ~ 19970892 (-)
LOC120567772 NA coding upstream 15158 19971490 ~ 19993721 (-)
ccdc24 NA coding upstream 37793 19994125 ~ 20020261 (-)
G116292 LOC107655868,LOC106532782,LOC108241678 non-coding downstream 9827 19924212 ~ 19937413 (-)
G116293 NA non-coding downstream 64831 19879905 ~ 19882409 (-)
G116274 NA non-coding downstream 195046 19745702 ~ 19752194 (-)
G116268 NA non-coding downstream 267810 19679189 ~ 19679430 (-)
G116181 NA non-coding downstream 299117 19645322 ~ 19648123 (-)
G116328 NA non-coding upstream 369317 20325649 ~ 20325874 (-)
G116366 NA non-coding upstream 431166 20387498 ~ 20388062 (-)
G116368 LOC101078271 non-coding upstream 434025 20390357 ~ 20391720 (-)
LOC120568747 NA non-coding upstream 624188 20580520 ~ 20585677 (-)
G116484 rock1 non-coding upstream 812303 20768635 ~ 20771028 (-)
xcr1b.1 NA other downstream 151481 19793342 ~ 19795759 (-)
G116138 NA other downstream 481860 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 724514 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 1011749 18931974 ~ 18935491 (-)
G115941 NA other downstream 1100963 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 1028469 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1051716 21008048 ~ 21010576 (-)
G116969 NA other upstream 2305666 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3389386 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 3474034 23430366 ~ 23430992 (-)

Expression


Co-expression Network