ftr67 (LOC104956513)


Basic Information

Item Value
gene id ftr67
gene name LOC104956513
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19956780 ~ 19962763 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814816.1
CCACGCCCGCTTTTTGTCACTTCCTGTAAACAAAGCAGCAGCTGTCTGTCAGATTCCTGTGTTTTCGCTCATTTTCTACGCCAACTTCAGCGTTTTTCGACGATGGCTCAAGGCGGAGTGGTCCTGGACAAGGACCAGTTCAACTGCTCGATATGTCTGGACGTGCTGAGGGACCCTGTGACCATCCCCTGCGGACACAGCTACTGCTCGGAGTGTATCCAGAACTACTGGGACCAGGACGACTACCTGGGGATCTTCGTCTGCCCGCAGTGCAGGCACAACTTCAACCCGAGGCCAGTTCTCGCCAGAAACACCATGTTAGCCGACGTGGTGGAGAAATTCAAAAAGACTGGACTCCAAGATGCAACAACGACGACTGGAAGTCAAAGTTTCGCTGAGGCCGACGACGTGGAGTGCGACGTGTGCGCCGGGAGGAAAAACAAAGCGGTGAAGTCTTGTCTGGTGTGTCTGGCCTCCTACTGCGACGTCCACCTCCAGCCTCACTACGAATCGGCTGCTTTCAAGAAGCACAGGCTGGTGTCGGCCTCCAAAAAACTCCAAGAGACGATCTGTGGTCGACACGACAAGCTACTGGAGGTGTACTGCCGCACCGACAAACAGTGCATCTGTTACCTGTGTCTGACAGATGAACACAAAGGCCACGACACGGTGCTGGCTGAGGCAGAGATACAACAGAAGCAGAGGCAGCTTGGTGACATGAAGCAGAGCTCTCAGCTGAGAATTCATCAAAGGGAAAAGGGTGTCCAGGAGATCAGACAAgccattttctctctcactCGTTCTGCTCgggcagcagcagaggagagcgACGCCGTCTTTACTGAACTGATTCGGTCGATCGAGCTGAAGCGTTTCGAGGTGAGAGAGCTGATTAAAGCCCAGGAAAAGAAGACGGTCAGTCAGGCCGAGCAACTGCTGGAGAAGATCCAgaaggagatcactgagctgaagaagaACGAGGCTGAACTGGACAAACTTTCCCATGCTGAGGACCACGTCCATTTCCTTCAGAGTTTTGAGTCTTTCCATGCTCCACCTGTGCTGTCAGCGTTGCCTACGGTCACCATTGACCCCAACCTCACCTTTGGCCCCGTGATGACagctgtgtccgatttcaaaggACTGTTGCTGGAGGTCTGCCAGGGAGGATTTGTCAGCATCTATGAGAGAGtgagAGATGTAGTGATTGTAGGTACTCCAAATCCTGCTGTACAGCTGGACACAACACAGCCCATGGGCCAGTCCAGTGATGGTGAATCAGCTGTACAAATGGAAGCAGCACTAGTGATCCCTCCACCTGGCCTAGACCAAAGTCCTGTGAACCCTCTCAACCCTTTCCTCCCTCCTGGATCTGCTGTGCCCACCTTTGCCTTCTCACCATTTGGCTCTAAACTCTCCTCAGGATCCAGACAGAGGAACCTTCAGCGCCGCGCTCACCCCAGGAGGAAATAGACTTGTAGTGGACATCAAAATCAACATTTAACATGCACCCACACGGGCTGAATGTCATTATACCTCAGTGCTCTTCTCTCACAAATCTGTACCGACACTTGTAAATTGTACATTTAATAATTAATCTTTTAGTATTATTTAATTGCTGTGTTTTGACCCATCAGCTATACTTGCATCTTGCACTATACTGCAGGTgggaaagagaaaaggaaagtaTTTAGTGCCACATTAGATCACATTGACAATGCATTTACTTGAGTTATAAGCAGCCTAAAACATGACTGACTCACTACATCttatttcagtatttgaaaGGAAATGTCATTGACATTTAATGAAGTTTAAGTTCATTTTAACAATGTAATGCTTTTATAaagatttttccttttttaaccaaaacaacATAACAATACGTTTGCTTTACAGACACATGTAATGATATATTGTGATTTGTGACATgctgacattaaaaaaaaagctaacaCACTTGTAAAACTA

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814816.1 True 1971 mRNA 0.48 7 19956780 19962763

Neighbor

gene id symbol gene type direction distance location
LOC120567774 LOC104956512 coding downstream 448 19947240 ~ 19956332 (-)
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding downstream 39917 19882902 ~ 19916863 (-)
LOC120567744 NA coding downstream 164877 19789625 ~ 19791903 (-)
tcea1 tcea1 coding downstream 355308 19593467 ~ 19601472 (-)
atp6v1h atp6v1h coding downstream 383493 19542850 ~ 19573287 (-)
LOC120567785 LOC103359745,LOC104917727,LOC103396371,LOC104956511,LOC102292405 coding upstream 1063 19963826 ~ 19967558 (-)
LOC120567783 LOC102292715,LOC100691961,LOC101465604,LOC102195716 coding upstream 5653 19968416 ~ 19970892 (-)
LOC120567772 NA coding upstream 8727 19971490 ~ 19993721 (-)
ccdc24 NA coding upstream 31362 19994125 ~ 20020261 (-)
LOC120567781 NA coding upstream 32770 19995533 ~ 19998081 (-)
G116292 LOC107655868,LOC106532782,LOC108241678 non-coding downstream 19367 19924212 ~ 19937413 (-)
G116293 NA non-coding downstream 74371 19879905 ~ 19882409 (-)
G116274 NA non-coding downstream 204586 19745702 ~ 19752194 (-)
G116268 NA non-coding downstream 277350 19679189 ~ 19679430 (-)
G116181 NA non-coding downstream 308657 19645322 ~ 19648123 (-)
G116328 NA non-coding upstream 362886 20325649 ~ 20325874 (-)
G116366 NA non-coding upstream 424735 20387498 ~ 20388062 (-)
G116368 LOC101078271 non-coding upstream 427594 20390357 ~ 20391720 (-)
LOC120568747 NA non-coding upstream 617757 20580520 ~ 20585677 (-)
G116484 rock1 non-coding upstream 805872 20768635 ~ 20771028 (-)
xcr1b.1 NA other downstream 161021 19793342 ~ 19795759 (-)
G116138 NA other downstream 491400 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 734054 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 1021289 18931974 ~ 18935491 (-)
G115941 NA other downstream 1110503 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 1022038 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1045285 21008048 ~ 21010576 (-)
G116969 NA other upstream 2299235 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3382955 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 3467603 23430366 ~ 23430992 (-)

Expression


Co-expression Network