XLOC_004731 (CR848736.1)


Basic Information

Item Value
gene id XLOC_004731
gene name CR848736.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25201543 ~ 25214727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009371
CTTTTCCTTGTGCAAGAACGTGTCGCATGAATATGACGTCACTAAGGCTATGTGGCTTTTTAGCCTAAGAAGTATTTGCTCCAACATCTAAAAGCCAAGTCTCATTTCCAAATGTAAAAGCTGGCATTTTGTTGGATTTCGTTAATACGTTTTTGTCTAAGAAGCCTTTTCACTGTTAAGGAGACACATACAAGGGCCTCGAGCGTGGAAAAGAGGTTTGATTTTGTGCTTGTATTCAAAGAGGAAGAAGGAAGCGAGTGACAGCCCTCCTACTGCTGAGCGTatcttagtaaaaaaataaaggcACAGAAGAGCAGGTGACGTTGCCCAGCTGAAGACCAGCGGGTTCGGAGGATCTCAGGACGGACTCTGCTACGCTCGTCAACACGAATGAAAACACATACCTGAACCCTGAGACAAACAGAGGCCACTGTGGAATATGGAATCAAGACTCTACTGGATACATAAAGAAAAAACCTTAGGCTGTACTCACACATACTTCCAGACAGAGAGAGACGGGGACAAGGGAATACCCAAAATGACAATTTGACAGGGAATATGAAAACAAGACTGGACTTTTTCTTCTTTGATGGAGAGTATTATGTAGATGTCATGTCCACATGACAAAATGTCTGTACATGGAATATGGAAAAGCTTATTTTAATCATTTCTAAAACTGGTCAAAATGCAGAGGAGACATTGCATGGGAGCACTGGAACAGAATTTGTCATCGCAACATTGTTTTTGAACTATTGAACTACAtggataaaattaaaaaaaaaaactatgtatcCAAAAAACTATAatgatgcactgaaaaaaatgcttttctaacttatcttttttgtcttgtttcttgtctacatatctaaaaattcttcaattaagaagcattttctagaaaagcaaaacaaaagctcTTGTTTTAAGGTTTAATGTGCCAAATTAAGTAAGCTTTTCCACAAGCTAAGTAATCTGCCACTGGGTTAAgataaaataatcttatgtcaaaacaaggaacaagaatattttgcttattttgctGGATTTAAGGAAAACTTACTTAGttttgatatattatttattaaaacaagg
>TCONS_00010936
agGAGACACATACAAGGGCCTCGAGCGTGGAAAAGAGGTTTGATTTTGTGCTTGTATTCAAAGAGGAAGAAGGAAGCGAGTGACAGCCCTCCTACTGCTGAGCGTGTGGatcttagtaaaaaaataaaggcACAGAAGAGCAGGTGACGTTGCCCAGCTGAAGACCAGCGGGTTCGGAGGATCTCAGGACGGACTCTGCTACGCTCGTCAACACGAATGAAAACACATACCTGAACCCTGAGACAAACAGAGGCCACTGTGGAATATGGAATCAAGACTCTACTGGATACATAAAGAAAAAACCTTAGGCTGTACTCACACATACTTCCAGACAGAGAGAGACGGGGACAAGGGAATACCCAAAATGACAATTTGACAGGGAATATGAAAACAAGACTGGACTTTTTCTTCTTTGATGGAGAGTATTATGTAGATGTCATGTCCACATGACAAAATGTCTGTACATGGAATATGGAAAAGCTTATTTTAATCATTTCTAAAACTGGTCAAAATGCAGAGGAGACATTGCATGGGAGCACTGGAACAGAATTTGTCATCGCAACATTGTTTTTGAACTATTGAACTACAtggataaaattaaaaaaaaaaactatgtatcCAAAAAACTATAatgatgcactgaaaaaaatgcttttctaacttatcttttttgtcttgtttcttgtctacatatctaaaaattcttcaattaagaagcattttctagaaaagcaaaacaaaagctcTTGTTTTAAGGTTTAATGTGCCAAATTAAGTAAGCTTTTCCACAAGCTAAGTAATCTGCCACTGGGTTAAgataaaataatcttatgtcaaaacaaggaacaagaatattttgcttattttgctGGATTTAAGGAAAACTTACTTAGttttgatatattatttattaaaacaagg
>TCONS_00010937
CAGTTGAGAAACTCAGAGGAGAGACTTCGCACACAGCGTGCTGAGCGGAATTTGAGTTCGTGGTAGCACTGCACGAAGCTGTGGTAGATGAAGCTCGTCAACACGAATGAAAACACATACCTGAACCCTGAGACAAACAGAGGCCACTGTGGAATATGGAATCAAGACTCTACTGGATACATAAAGAAAAAACCTTAGGCTGTACTCACACATACTTCCAGACAGAGAGAGACGGGGACAAGGGAATACCCAAAATGACAATTTGACAGGGAATATGAAAACAAGACTGGACTTTTTCTTCTTTGATGGAGAGTATTATGTAGATGTCATGTCCACATGACAAAATGTCTGTACATGGAATATGGAAAAGCTTATTTTAATCATTTCTAAAACTGGTCAAAATGCAGAGGAGACATTGCATGGGAGCACTGGAACAGAATTTGTCATCGCAACATTGTTTTTGAACTATTGAACTACAtggataaaattaaaaaaaaaaactatgtatcCAAAAAACTATAatgatgcactgaaaaaaatgcttttctaacttatcttttttgtcttgtttcttgtctacatatctaaaaattcttcaattaagaagcattttctagaaaagcaaaacaaaagctcTTGTTTTAAGGTTTAATGTGCCAAATTAAGTAAGCTTTTCCACAAGCTAAGTAATCTGCCACTGGGTTAAgataaaataatcttatgtcaaaacaaggaacaagaatattttgcttattttgctGGATTTAAGGAAAACTTACTTAGttttgatatattatttattaaaacaagg

Function

GO:

id name namespace
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009371 False 1095 lncRNA 0.37 4 25201543 25214727
TCONS_00010936 False 921 lncRNA 0.37 3 25205531 25214727
TCONS_00010937 True 811 lncRNA 0.35 2 25210011 25214727

Neighbor

gene id symbol gene type direction distance location
XLOC_004730 pigf coding upstream 90569 25097754 ~ 25110974 (+)
XLOC_004729 gch2 coding upstream 108973 25085751 ~ 25092570 (+)
XLOC_004728 CR385067.1 coding upstream 126423 25073305 ~ 25075120 (+)
XLOC_004727 calm3a coding upstream 242751 24952902 ~ 24958792 (+)
XLOC_004726 NA coding upstream 257039 24944172 ~ 24944504 (+)
XLOC_004732 mta3 coding downstream 9072 25223799 ~ 25284510 (+)
XLOC_004733 CR932077.1 coding downstream 97291 25312018 ~ 25430371 (+)
XLOC_004734 ppm1bb coding downstream 217899 25432626 ~ 25487244 (+)
XLOC_004735 NA coding downstream 287679 25502406 ~ 25504380 (+)
XLOC_004736 six3b coding downstream 385958 25600685 ~ 25603341 (+)
XLOC_004724 BX255907.1 non-coding upstream 635951 24565478 ~ 24565592 (+)
XLOC_004723 BX255907.2 non-coding upstream 783203 24418224 ~ 24418340 (+)
XLOC_004721 AL928656.1 non-coding upstream 987026 24214401 ~ 24214517 (+)
XLOC_004738 CR932018.1 non-coding downstream 433400 25648127 ~ 25648243 (+)
XLOC_004744 NA non-coding downstream 1274626 26489353 ~ 26491973 (+)
XLOC_004748 NA non-coding downstream 1374917 26589644 ~ 26593298 (+)

Expression


Co-expression Network