trnau1apb (LOC102780921,LOC102294605)


Basic Information

Item Value
gene id trnau1apb
gene name LOC102780921,LOC102294605
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9542642 ~ 9551821 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814852.1
GAGAGAAACCGGCGGGCAGGCAGAACTCCAACACCGGAAGTGTCACAGCTTGTTGAAAAAGGAAGCGGAACCACATACCGATGTGTTCCGAGTGAGCGTGTGGAGAACTTTTAACGTTGTGAAATTTCGCTGTTTTTGCACCCCCATCAAACACCAACGGACCCCCTCTACAGTTTCATCTCCGTTCCGAATCCAAGATGTTTAACAGACAGACGAGCCTGTGGATGGGTGATTTGGACCCATACATGGATGAGACCTTCATCAAGCAGGCATTTAGCGCCATGGGAGAATCGCCGTTTGGAGTCAAGATCATCACTCACAGGATAACAGGGGGTTCTGCTGGATACTGCTTTGTGGAGCTGGCAGATGAAGCAAGTGTCGACCGCTGTGTCCAAAGACTGAACGGAAAACTGGTTCCTGGATCAAACCCGCCTCGGAAGTTCAAGCTAAACTATGCCACCTACGGCAAGCGGCCAGAGGCAGGGCCGGAGTACTCCGTGTTTGTGGGCGACTTGGCCTCCGAGGTGGACGACTTCCAACTGCACCAAGTTTTCAAGAAGTACCCTTCCTGCAAGGGAGCCAAAGTAGTCACTGACCAGTATGGATACTCCAGAGGCTACGGCTTCGTCAAGTTTGGGGAGGAGGGCGAGCAGCAGAAGGCGATCGAGGAGTGCCAGGGTACGATGCTGGGGGGCAAGCCGCTCCGACTCAGCGTTGCTGTAGCAAAGAGCCAGAAGATGAGCAACTACCACGGGGGCCAGGGCCAGAATTACCATAGCAACTACAACCAATCCCAGTCCAGTTACTACGGCAACCAGGGCAGCGGGGCTCAGGGGGGCTACTACGCTCAGTGGGGTGGCTATGACCAGTACAGCGGCTACAACAGCGGCTACAACACTGGCTACAACActggctacaactacaactATGGGCCCTATGGATACCCCCCACCAGGTCACATGATGCCACCACCTCCAATGGGGGTACCGCCCATGTCCACTGACATGTCCGGGGCTGTAGAGCAGGGCCACGAGGAGGGTGGGGATAATGATGAGGATAATTCAGAAGAGCCCATAGCTGAATGTGACGTGGAGCAGTGGAACAAAGATTTTATGCAGCGCAGCGAGGAGCTCTACGACGCCATGATGAACTGTCACTGGGAACCCCTGGACTCTGTGAACTCCCCCATCCCCTCCCTCTCCTGATGAATCTCTTTCTTCTGATCCCTCCCCAAActttaaatatttcattttttttttatgattattattattttttttaacttctccTAATCTACCATGATCTAACACGACCTTAAAAAGGCCTGTTTAGTTCACCGTCTCAGTACTTGCCTAAGCCCGACTGAAGGCTGAGAGTACATACCTGTACATGTTTCTCTTCAAATACTCAAAGTACACACAAATATTCACTTGAttttaatgtttaccatgttggTAATATCCAAAAAGTAGTTCAATAATCAGTGATGTTACGGTGTAGTGCATACTGTTTTGTATGAACTCCTCAATAAACCAGAAGCTAAAAGCTTTAGGCTGAAGTAGTCTGTCTCTGCTGTTGACTGGCACACAGTAGCTGTAGCATTAGAAACTGAACGCCCCGTGTCAATATTTCACCATGTAATGATATCACTGAGGAACAAGCTCCACTGTCGGTTACTTTTGTCGATCCATGTTGAAATGGCGACGCCGGCAAAAGTTAACTTCGCTCATTGGATGTGCCCCTGACTTTTTACAGACGTAAAGAGATTGTCttctgaagacaaaaaaaactgcctTAATTGTCATTTGCCATGTACCTCCTCTTAGTCTATGATGGTCATTAGAATTATTTTGTATATACAGGATATCAGTCTTTCttgtctacatttttttttaatggaagaaatgttcttcctttttattttattttgctgaTCGATGACTTAAAAGGCGTAACAGCATGATGAGGACGTTGTTTATCGAACAGTAATCAatcacaaatgtaatttatgACTGTTTTCCAGACCAGAAGcttgatgtctgtgtgtaaaatgatgAATGGTACAATCGCCAAAATGCTTTGGAGCGCTGTGAAACTGTTATGGTTTTGTGAGGTCGACAGCGGATTTTCTGTATCAAATGTCAAGGCAGCATGTACTCTCTGCTGTTTGATTGCTGatgttttgtatatattttctttGTGGAGGCGTTTTATCAATACAACTAATTTAGGAGGAAAA
>XM_039814853.1
ACGAGAGAAACCGGCGGGCAGGCAGAACTCCAACACCGGAAGTGTCACAGCTTGTTGAAAAAGGAAGCGGAACCACATACCGATGTGTTCCGAGTGAGCGTGTGGAGAACTTTTAACGTTGTGAAATTTCGCTGTTTTTGCACCCCCATCAAACACCAACGGACCCCCTCTACAGTTTCATCTCCGTTCCGAATCCAAGATGTTTAACAGACAGACGAGCCTGTGGATGGGTGATTTGGACCCATACATGGATGAGACCTTCATCAAGCAGGCATTTAGCGCCATGGGAGAATCGCCGTTTGGAGTCAAGATCATCACTCACAGGATAACAGGGGGTTCTGCTGGATACTGCTTTGTGGAGCTGGCAGATGAAGCAAGTGTCGACCGCTGTGTCCAAAGACTGAACGGAAAACTGGTTCCTGGATCAAACCCGCCTCGGAAGTTCAAGCTAAACTATGCCACCTACGGCAAGCGGCCAGAGGCAGGGCCGGAGTACTCCGTGTTTGTGGGCGACTTGGCCTCCGAGGTGGACGACTTCCAACTGCACCAAGTTTTCAAGAAGTACCCTTCCTGCAAGGGAGCCAAAGTAGTCACTGACCAGTATGGATACTCCAGAGGCTACGGCTTCGTCAAGTTTGGGGAGGAGGGCGAGCAGCAGAAGGCGATCGAGGAGTGCCAGGGTACGATGCTGGGGGGCAAGCCGCTCCGACTCAGCGTTGCTGTAGCAAAGAGCCAGAAGATGAGCAACTACCACGGGGGCCAGGGCCAGAATTACCATAGCAACTACAACCAATCCCAGTCCAGTTACTACGGCAACCAGGGCAGCGGGGCTCAGGGGGGCTACTACGCTCAGTGGGGTGGCTATGACCAGTACAGCGGCTACAACAGCGGCTACAACACTGGCTACAACActggctacaactacaactATGGGCCCTATGGATACCCCCCACCAGGTCACATGATGCCACCACCTCCAATGGGGGTACCGCCCATGTCCACTGACATGTCCGGGGCTGTAGAGGGCCACGAGGAGGGTGGGGATAATGATGAGGATAATTCAGAAGAGCCCATAGCTGAATGTGACGTGGAGCAGTGGAACAAAGATTTTATGCAGCGCAGCGAGGAGCTCTACGACGCCATGATGAACTGTCACTGGGAACCCCTGGACTCTGTGAACTCCCCCATCCCCTCCCTCTCCTGATGAATCTCTTTCTTCTGATCCCTCCCCAAActttaaatatttcattttttttttatgattattattattttttttaacttctccTAATCTACCATGATCTAACACGACCTTAAAAAGGCCTGTTTAGTTCACCGTCTCAGTACTTGCCTAAGCCCGACTGAAGGCTGAGAGTACATACCTGTACATGTTTCTCTTCAAATACTCAAAGTACACACAAATATTCACTTGAttttaatgtttaccatgttggTAATATCCAAAAAGTAGTTCAATAATCAGTGATGTTACGGTGTAGTGCATACTGTTTTGTATGAACTCCTCAATAAACCAGAAGCTAAAAGCTTTAGGCTGAAGTAGTCTGTCTCTGCTGTTGACTGGCACACAGTAGCTGTAGCATTAGAAACTGAACGCCCCGTGTCAATATTTCACCATGTAATGATATCACTGAGGAACAAGCTCCACTGTCGGTTACTTTTGTCGATCCATGTTGAAATGGCGACGCCGGCAAAAGTTAACTTCGCTCATTGGATGTGCCCCTGACTTTTTACAGACGTAAAGAGATTGTCttctgaagacaaaaaaaactgcctTAATTGTCATTTGCCATGTACCTCCTCTTAGTCTATGATGGTCATTAGAATTATTTTGTATATACAGGATATCAGTCTTTCttgtctacatttttttttaatggaagaaatgttcttcctttttattttattttgctgaTCGATGACTTAAAAGGCGTAACAGCATGATGAGGACGTTGTTTATCGAACAGTAATCAatcacaaatgtaatttatgACTGTTTTCCAGACCAGAAGcttgatgtctgtgtgtaaaatgatgAATGGTACAATCGCCAAAATGCTTTGGAGCGCTGTGAAACTGTTATGGTTTTGTGAGGTCGACAGCGGATTTTCTGTATCAAATGTCAAGGCAGCATGTACTCTCTGCTGTTTGATTGCTGatgttttgtatatattttctttGTGGAGGCGTTTTATCAATACAACTAATTTAGGAGGAAAA

Function

NR:

description
PREDICTED: tRNA selenocysteine 1-associated protein 1-like

GO: NA

KEGG:

id description
K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814852.1 True 2239 mRNA 0.46 9 9542644 9551821
XM_039814853.1 False 2238 mRNA 0.46 9 9542642 9551821

Neighbor

gene id symbol gene type direction distance location
trnaq-cug_12 NA coding upstream 512 9542059 ~ 9542130 (+)
trnaq-cug_11 NA coding upstream 1430 9541141 ~ 9541212 (+)
trnaq-cug_10 NA coding upstream 2691 9539880 ~ 9539951 (+)
trnaq-cug_9 NA coding upstream 3440 9539131 ~ 9539202 (+)
trnaq-cug_8 NA coding upstream 3895 9538676 ~ 9538747 (+)
LOC120567806 LOC102294892,LOC101484004,LOC107384188,LOC102200768 coding downstream 14919 9566740 ~ 9581212 (+)
LOC120567805 LOC101483728 coding downstream 34872 9586693 ~ 9601058 (+)
LOC120567813 LOC101470061 coding downstream 74343 9626164 ~ 9639079 (+)
LOC120567812 NA coding downstream 98590 9650411 ~ 9664601 (+)
LOC120567595 LOC104937197,LOC103364125,LOC101484549,LOC100690053 coding downstream 264768 9816589 ~ 9823705 (+)
G113306 NA non-coding upstream 72545 9469492 ~ 9470097 (+)
LOC120568401 NA non-coding upstream 73322 9467298 ~ 9469320 (+)
G113290 NA non-coding upstream 167537 9374449 ~ 9375105 (+)
G113274 NA non-coding upstream 273095 9269347 ~ 9269547 (+)
G113273 NA non-coding upstream 285059 9257323 ~ 9257583 (+)
G113337 LOC103364124 non-coding downstream 121884 9673705 ~ 9683738 (+)
G113338 LOC106931405,LOC106965048,LOC102781692,LOC103146972 non-coding downstream 138667 9690488 ~ 9702650 (+)
G113429 NA non-coding downstream 260159 9811980 ~ 9814242 (+)
G113446 NA non-coding downstream 290880 9842701 ~ 9843483 (+)
LOC120569032 NA non-coding downstream 1285682 10837503 ~ 10839103 (+)
G113130 NA other upstream 540074 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 639795 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 716831 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 733183 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 827371 8708661 ~ 8715271 (+)
LOC120568835 NA other downstream 1333774 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 1780747 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 2570848 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 2605628 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 3030821 12582642 ~ 12599840 (+)

Expression


Co-expression Network