gbx1 (gbx1)


Basic Information

Item Value
gene id gbx1
gene name gbx1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21441760 ~ 21444125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814880.1
ATAAGAGGGAAAAGGTAGCGGTGGGGCACACAACAAAGCGCCCGACTGACTGACACATATAGAGTGCAGAGATCCGGAGAAGCAGTCCACTCCCAGGGATGACAGTACGGCAGGGGATCTACTTTCAATTCACTTTGTCTTTGCACTGAAAGTTTTGCGCGTCGCCGAGGAAAGGACACCTGCTTTCAAGTTCCCACCGAATCCAAGTGTTTGCCTGCAAAATGCAGAGACCAGGCGGCCAAGGGACGGCGTTTTCTATCGATTCCCTGATAGGGACTCCTCAGCCCAGACCGGGACACCTGCTCTACACGGGCTATCCTATGTTCATGCCGTACAGACCTTTGGTTATTCCACAAGCTTTATCCCACTCGCCTTTATCGTCTGGTATACCTCCACTCGCGCCTTTGGCTTCTTTTGCGGGACGGCTCACCAACACGTTCTGTGCCAGTTTGGGACAGGGGGTGCCATCCATGGTGGCGCTCACCACGACGATGCCAAGTTTCTCGGATCCTCCGGACAGTTTCTACCCACCACAAGAGCTGCCAGGTCCCCGTTTAAGCGCCGCCGATCCCGCAGCGAGAAGGCAGGAAAGTCCTCACTCTGACGAGCTGCACAGCCGGGACAAGGGCTCTGAGCTGCTTAACTTCTCGGAAACTTTTCAAACAATATCAGGTGAGACCAAACTGTACAGCTCAGACGACGAGAAGCTGGACCTAAAATCAGCAGACACCGTGTGCAGTGACCGAGAGGACAGCTCCGCAGACAGCGAGAACGAAAGTTTCTCGGATGGGAACAACTGTGGCTCCCTGTCCCAGAAGAGCAAACTAAAAACCGGCTCGCAGGAGGCGCTACCGACCGGCAGCTCAGCGGGGAAGAGCCGCAGGAGACGAACAGCTTTTACTAGCGAGCAGCTGCTCGAACTTGAAAAGGAGTTTCACTGTAAAAAGTACCTTTCTCTGACTGAACGCTCTCAGATTGCGCACGCACTTAAACTGAGCGAGGTGCAGGTGAAGATTTGGTTTCAGAACCGCAGGGCCAAGTGGAAACGGATCAAAGCCGGCAACGTTAACAACCGGTCAGGAGAACCGGTGAGAAATCCCAAAATTGTGGTCCCCATCCCCGTGCACGTCAACAGGTTTGCGGTGAGGAGTCAGCATCAACAAATAGAACAAGGGACCAGGCCATGAACTCAGATGAAAAtctaaaatattaataataattaaaaaaaaaaaaaacacttacatTGACTCTATGTTCCTCTGATTCGTTGAACGCATGAAGCACAAAAAGGAGGACACGATTATTTTGTCTGAGAGGTGAGACTGAGCAGAGATGTGCTCGCAGACAGATCAATTAGTTGACAAAATgctgtcatttttatttattgctctgtgaatatgtaaatataaatggGTAAAAATTGGTACAAATGGGCACTATGAGATGAGACTGTAAagatttttttaagtatttataTAGGGCCAAAATGTTCTGTTGGTTATGTGCATGTCTTCATTTGGTGAAGCTGAATTACAGTTTTGTGTTTCGTACAATTTGTTGACCACATTTGCATGTACAGTAAGacgttttacattttgtttggcAACTGTAGGAACCACCTTTGACAGCTAtttgtggagagagagagagagaaaaaagaaaagatgtgaAGGAAATATTGACCAAACAAGGGACAACTGTAAAGTATATTGACCTAATAAATCGCTTTATACGAA

Function

symbol description
gbx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cerebellum development; midbrain-hindbrain boundary morphogenesis; and regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural keel; neural plate; presumptive neural plate; and ventral mesoderm. Orthologous to human GBX1 (gastrulation brain homeobox 1).

NR:

description
PREDICTED: homeobox protein GBX-1

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060827 regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09321 GBX; homeobox protein GBX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814880.1 True 1736 mRNA 0.47 2 21441760 21444125

Neighbor

gene id symbol gene type direction distance location
asb10 asb10 coding upstream 1827 21434967 ~ 21439933 (+)
zgc:92591 LOC103479695,LOC101468538,LOC101063387,LOC100696317,LOC105935710,LOC106963471,LOC103358166 coding upstream 13081 21428019 ~ 21428679 (+)
cdk5 cdk5,LOC106599847 coding upstream 143427 21291706 ~ 21298333 (+)
abcb8 abcb8,LOC103375355,LOC102789860 coding upstream 151259 21285152 ~ 21290501 (+)
guk1a guk1,LOC107100458 coding upstream 233076 21200717 ~ 21208684 (+)
rb1cc1 rb1cc1 coding downstream 137155 21581280 ~ 21595237 (+)
st18 NA coding downstream 157927 21602052 ~ 21642496 (+)
pcmtd1 pcmtd1 coding downstream 204693 21648818 ~ 21660508 (+)
snai2 snai2 coding downstream 263128 21707253 ~ 21709643 (+)
cebpd cebpd coding downstream 353313 21797438 ~ 21798854 (+)
G116657 NA non-coding upstream 115497 21270751 ~ 21326263 (+)
G116616 NA non-coding upstream 197367 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 307748 21129608 ~ 21134012 (+)
G116538 NA non-coding upstream 411264 21021631 ~ 21030496 (+)
G116529 NA non-coding upstream 412778 20949004 ~ 21028982 (+)
G116723 NA non-coding downstream 10205 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 169975 21614100 ~ 21662470 (+)
G116794 mapre2 non-coding downstream 390341 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 491394 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 580988 22025113 ~ 22036950 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 526438 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1066127 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1976379 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2389518 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2716313 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 426828 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1163924 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1197385 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1989500 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2148607 23592732 ~ 23685804 (+)

Expression


Co-expression Network