thoc1 (thoc1)


Basic Information

Item Value
gene id thoc1
gene name thoc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20792744 ~ 20799545 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814886.1
CCTCGACACAGCCGAAGAAACCGGAAGACGTTTAGCGACACTTCCCGTTGAAAAAGTGTAAAGATGTCGCCGCCCTTATTCAATTTTGTCGACGCTAAAGACAAATTTACGGCGTCTGCCAGAAATGCCCTAGTATGTAAAACCAGCAAACCTTTAATACATGCTTTCAACCAGTTCCCTGGGAATGAGGCAGAAAAGAAGACAACATTTGACCAGGCGCTGAGGGGTGTTCTTGGTGATCAGATTGTTGAGCAGACGGGGAGCTGCGATGAATACTTGTCTCTCATCTACCTGAGTATTTCTGCAGTTACAGAAGGTATCTGTTCTGCTACAACTCCTTTTCTTCTGCTTGGAGATGTACTGGACTGTCTTCCTCTCGACCAATGTGACAAAATATTCTCTTTCGTCGAGGAGAATGTCTCCACCTGGAAATCGAACTCTTTTTACACTGCTGGGAAGAACTACTTGTTGAGGATGTGTAATGATCTTTTAAGGAGGCTGTCCAAATCCCAGAATACTGTATTCTGTGGGCGAATCCAGCTTTTCCTGGCACGTCTCTTCCCTCTGTCTGAAAAATCAGGTCTCAATCTGCAGAGCCAGTTTAATCTGGAGAATATAACAGTGTTCAACAAAAATGAACAAGAAAGCACTCTGGGCCAGAAGCACACAGAAGAAAAGGAAGATGGCATGGAGGTGGAAGAAGGAGAAATGGGAGAGGATGATGCTCCTGCACCGTGTTCCATTCCGATTGACTACAACTTGTACAGAAAGTTCTGGACACTGCAGGACTACTTCAGAAACCCTGTGCAGTGTTACGATAAATTCTGTTGGATGACATTCCTTAAGTTCTCAGATGAGACTTTGGCAGTGTTCAAGAGCTATAAACTGGATGACATGCAGGCCTCTAAGAGAAAGCTGGAGGAGATGAGAGCATCTGGAGGAGAGCATGTCTACTTTGCCAAGTTTCTTACAAGTGAGAAGCTCATGGACTTGCAGCTCAGCGACAGCAACTTCAGGCGGCACATTTTACTGCAGTACCTCATCCTCTTCCAGTACCTGAAGGGTCAGGTCAAGTTCAAAAGCTCCAACTGTGTTCTGAACGATGACCAGACTGCATGGATTGAAGAGACAACTAAACTGGTTTATCAGCTGCTGAGAGAGATCCCTCCTGATGGAGACCAGTTTGCCACCATGGTTGAGCATATTCTCAACACAGAGGAGAGCTGGAATAGCTGGAAAAATGAGGGATGTTCGAGCTTTGTGAAAGAAAGGCCAGTAGATGACAAACCCAAAAGACCCACCAGGAAAAGACAAGCTCCAGAAGACTTCCTTGGAAAAGGGCCGGACCGCAAGATTTTCATGGGAAATGATGAGTTGACTCGACTGTGGAACCTGAATCAGGACAACATGGAGGCCTGCAAGTCGGACAGCAGGGAGTTCATGCCATCACTGGACGAATTCTTTGCGGAAGCCATTGAACAGGCCGACCCTGCTAACATGGTGGAGGAAGAGTACAAGGTTGTGCGGAACCCAAACTACGGCTGGCGTGCTCTGAGGCTGCTGTCCAGGAGAAGTCCACACTTCTTTCAACCAACTAACCAGAAGTTCAAGAGCCTGGCAGACTACCTAGACAGCATGGTCAGCAAACTGGCCAAAGAATTGCCGAAGGATATTCCCTCCGAAGAGATCAAGACGGGAGAAGACGATGATGACGACAATGGAGACAATCTTCTCAAAGACAGCAATGACAGTCCGAGCATACAGAACAAGATGGTGACAAACCAGCAGATGGATGACATAGCAGCCAAACTGGGCGCGCAGTGGAAGATGCTGGCATCCCAGTTGGAGATGAAGGCAGTGGAGTTGCGAGAGATTGAGACAGACAGTGAAGATGTTGACATGCAGGCCAAACTGCTGCTTGTAGCCTGGCAGGATAGAGAGGGATCACAAGCTACTGTGGAGAGCCTGGTCACTGCTCTTAATGCTGCAGGATTCTCCCAGATTGCAGACAACCTCAATGAGGCTTAAGGTAGATCATTCGTTACGTAAATAAGTACCTCCATTACATTGTTGCAACATCCTTTTTCATACCAAAAACTGGAGACCATTTTTGTATGTAGTATTGGTTGAAACcggttgtttttttcccactgtaaaaaaatccaataaatgttttttttctaataa

Function

symbol description
thoc1 Predicted to be involved in mRNA export from nucleus and regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within signal transduction. Predicted to be part of THO complex part of transcription export complex. Orthologous to human THOC1 (THO complex 1).

NR:

description
PREDICTED: THO complex subunit 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K12878 THOC1; THO complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814886.1 True 2187 mRNA 0.46 21 20792744 20799545

Neighbor

gene id symbol gene type direction distance location
greb1l NA coding downstream 52715 20693367 ~ 20740029 (-)
mib1 mib1 coding downstream 116918 20620288 ~ 20675826 (-)
gata6 gata6 coding downstream 197582 20588784 ~ 20595162 (-)
cables1 cables1 coding downstream 234447 20533111 ~ 20558297 (-)
mmp16b LOC103369336 coding downstream 336866 20438467 ~ 20455878 (-)
LOC120569019 aqp1,LOC103358082,LOC101079855,LOC104917699 coding upstream 16104 20815649 ~ 20818164 (-)
myl13 myl3,LOC105919861,LOC102217899,LOC107395748 coding upstream 121051 20920596 ~ 20923664 (-)
ccdc13 NA coding upstream 202435 21001980 ~ 21006127 (-)
jmjd4 jmjd4,LOC102786139 coding upstream 251794 21051339 ~ 21053776 (-)
wnt9a wnt9a,LOC106599874 coding upstream 333457 21133002 ~ 21151186 (-)
G116484 rock1 non-coding downstream 21716 20768635 ~ 20771028 (-)
LOC120568747 NA non-coding downstream 207067 20580520 ~ 20585677 (-)
G116368 LOC101078271 non-coding downstream 401024 20390357 ~ 20391720 (-)
G116366 NA non-coding downstream 404682 20387498 ~ 20388062 (-)
G116328 NA non-coding downstream 466870 20325649 ~ 20325874 (-)
G116499 NA non-coding upstream 6608 20806153 ~ 20806691 (-)
G116508 NA non-coding upstream 27967 20827512 ~ 20827711 (-)
G116525 NA non-coding upstream 119424 20918969 ~ 20919716 (-)
G116580 NA non-coding upstream 259047 21058592 ~ 21061240 (-)
G116582 NA non-coding upstream 307969 21107514 ~ 21107718 (-)
xcr1b.1 NA other downstream 996985 19793342 ~ 19795759 (-)
G116138 NA other downstream 1327364 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 1570018 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 1857253 18931974 ~ 18935491 (-)
G115941 NA other downstream 1946467 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 185256 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 208503 21008048 ~ 21010576 (-)
G116969 NA other upstream 1462453 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 2546173 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 2630821 23430366 ~ 23430992 (-)

Expression


Co-expression Network