LOC120567845 (ptchd3)


Basic Information

Item Value
gene id LOC120567845
gene name ptchd3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13643360 ~ 13645194 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814920.1
CGCTACGTCCATGGTTGACGAGGTCTGAAAATATATTGAAATAAActagaaaataaaaactaatgttACTTCCAGGAATCCAGGGCCCGTTTAGTGTGACCTCAGCCATGAGAAGGAATTACCTGGGGGTTAGGCAATTGAAAACCATTGACAGTAAGTATTGAAATGGAACTAGTGAGCCATACTACACCAACTGTTCTTCAATAGGCTCTTTGACTGAGCCTTTCCTCAAACCTCATCTGCCTCTGTTCATTAGAGAGTGGGCCAACCCTGTTATTATGCAAATCTCATGTCATGAAGGAGCTAAGAAGAGTCTGCAGCCCAATAAATACAGCTGGTTGTGAATACTCAAGGACCTCTCTAATGTGGAAATTTCTGGGAAAAAAGAGCAGCTCTTTTATATTTCCCCAAAATAGCTTTTGTACCAAATTCCAACCAGAAACCCAGATTTTAAGGGAGCACGTTTTCACAGCTATGGGCAGAATCCGCACAGATTGCATAGAGAGACTACTACGCATCTGCTTTGAAATGATGGGTCATTTTATTGGATCTCATCCCTGGTGGTTCGTAATCATCCCCCTCATTCTCTCGGCAAGTCTGGGGAGCGGATTTGTTCTTCTCGAGGACAGAATGTCAAACGATATTGAAGAGCAGTTCACACCTGGCGACGGACAAGCCAAGCTGGAGAGGAAATACATCCAAGAAACTTTTCCAGGAAATGATTCCATGTTTTCACGTTTACGACTGAGCACAGATGGGAATTATGCAACTCTCATAGCTACAAGTGACAGGAATATTCTGACTGTGGAGTCGCTCCAGGACATCCTAGACTTAGACTTTAAAGTTAGGAATATGGCAGTTCAGTTTAACAACCTGTCATTTGAATATGTGGATGTTTGTGCTGAGGTGATGGGATCCTGCACCtctaattacattttagatattATTGAATACAGTGCCAACAATATAGACACAATCAATTTGACCTTTCCGTGGTATTACTCTAATTTTAGGAGTATTCCTTTGTATTTAACTCTGGGGAGTGTGAAATTGTGCGAGGAGAGTTCAGTAGTTGAAAGTGCTAAAGCCATACAGCTCCATTACTATTTAGATGAggacaacaaaacaaagactGACCTTTGGTTAGAAAGCTTTATTAATTTGGTCTCAAATATATCATCAACTTCTATTCAGGTAAGCAAAACATTCCAGTGTTTTAAATGatcatctttttgtttttga

Function

symbol description
ptchd3 Predicted to be located in sperm midpiece. Predicted to be active in membrane.

NR:

description
PREDICTED: patched domain-containing protein 3

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814920.1 True 1242 mRNA 0.40 2 13643360 13645194

Neighbor

gene id symbol gene type direction distance location
LOC120568814 LOC106928308,LOC103129201,LOC107086848,LOC103354342,LOC101170217,LOC106961870 coding downstream 23662 13595178 ~ 13619698 (-)
si:ch211-252f13.5 LOC104963693,LOC102078510,LOC102307931,LOC101471818 coding downstream 67786 13569349 ~ 13575574 (-)
LOC120568580 LOC102206875 coding downstream 177650 13440689 ~ 13465710 (-)
LOC120568786 LOC104934149,LOC103354348 coding downstream 205911 13421548 ~ 13437449 (-)
LOC120568167 slc25a30,LOC106963122,LOC103151570,LOC107086856,LOC102233249,LOC100698510,LOC102198731 coding downstream 281318 13354229 ~ 13362042 (-)
LOC120567847 LOC102799957,LOC102205731,LOC101468926,LOC102313119 coding upstream 6074 13651268 ~ 13659457 (-)
LOC120567848 LOC102214260,LOC102313714,LOC100696384 coding upstream 16344 13661538 ~ 13687808 (-)
LOC120567950 LOC103354333,LOC102291624,LOC100702032,LOC107083612,LOC107384444 coding upstream 129788 13774982 ~ 13822764 (-)
tnk2b tnk2 coding upstream 243105 13888299 ~ 13915355 (-)
c11h7orf26 LOC103366860,LOC102212268,LOC102304778,LOC102798014,LOC100695326 coding upstream 333056 13978250 ~ 13984589 (-)
G114257 NA non-coding downstream 14693 13625776 ~ 13628667 (-)
G114256 LOC102077222,LOC102776852 non-coding downstream 17881 13622903 ~ 13625479 (-)
G114247 anxa13,LOC105930306,LOC100703370 non-coding downstream 78557 13556604 ~ 13564803 (-)
LOC120568710 NA non-coding downstream 93894 13533138 ~ 13549466 (-)
G114215 LOC103354350,LOC100704451,LOC101473770,LOC106904511,LOC103151571,LOC106963118 non-coding downstream 236530 13394461 ~ 13406830 (-)
LOC120567953 NA non-coding upstream 296861 13942055 ~ 13948115 (-)
G114456 c8a non-coding upstream 404300 14049494 ~ 14055523 (-)
LOC120568036 NA non-coding upstream 479509 14124703 ~ 14171474 (-)
G114518 NA non-coding upstream 674149 14319343 ~ 14320763 (-)
G114530 NA non-coding upstream 773657 14418851 ~ 14466248 (-)
dis3l2 dis3l2 other downstream 161135 13469531 ~ 13482225 (-)
G114152 NA other downstream 554797 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 668032 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 874735 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 1034791 12601180 ~ 12608569 (-)
tfr1a NA other upstream 304677 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 968419 14613613 ~ 14618224 (-)
G114680 NA other upstream 1150724 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 1644888 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 2498966 16144160 ~ 16148121 (-)

Expression


Co-expression Network