arhgef18a


Basic Information

Item Value
gene id arhgef18a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18466050 ~ 18479721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814931.1
CCAGTGTGACTTTCTATGTGTCATCCAGATTCCCATTATGCTCTGCTGCAAGGCGATCTTGAGTCCGACCAGCAGAACCTGGAGGCGGAGTCGTGGAACATGGCTGTGGACCAGAACTACCTGAAGGCCCTTAACAAAGAGGCTGTTAAAAGGCAGGACGTCATCTATGAGTTGATCCAGACGGAGATGCACCATGTACGCAACTTAAAAATCCTTCTCCGTGTCTACATGCACGAGTTAAGGCAGTCTTTGCTGATAGAGGAGGCTAGGCTGGAGCGACTCTTTGCTGGGGTGGAATCCCTGCTTACCCTCCACCAGCACTTCCTTAACTGCCTCAAATTGCGCCAAAAGACAAGTCAGGAGGAAGGAAGCCCAAGCAGCTACCAGATCACACATCTGGGGGACATTCTCATTTCTCAGTTTTCAGGACCACTGGGAGAAGGAATGATGGAGTGGTACAGTGTTTTTTGCGGTCATCACAATGAAGCTATCACCTTCTACAAAGAGCAGTTGCAGAATAACAAAAAACTGCAGGTCCTTGCTAGGaaAATAGGTCAGCTGCCCCTGGTGCGAAGGTTGGGAGTTCctgagtgttttctgttggtgaCTCAACGAATCACAAAATATCCCATCCTGGTGGAGCGAATCATACAGAACACTGAAGCTGACACCAACGAGTACAAGTCTCTGGTACAGGGTCTGGCACTGATCAAAGACACCATCAACCAGGTGAACACCCAGGTCAGTGAATATGAGAAAGCCGCCCGTCTTAAAGACATCTGCCTGCGTCTGGAGCCAAAATCTCAGGGCCGGCTGAAGGACGGCCGGCAGCTCCGCAAGGAGGATCTTCTCCAGGGAAACAGGACACTGCTACACGAAGGCACCGTCACCTGGAAGTCCGGTAGACAAAAAGACATCCATGCTGTGCTGCTGTCAGACGTTCTCCTTCTCTTACAAGAGAAAGACCAGAAGCTTGTATTTGCTGCTGTGGATAACAAACCACCAGTGATCTCCCTTCAAAGGCTGATCGTTAGGGAAGTGGCTCACGAGGACAAAGCCATGTACCTCATTTGTGCATGCACTACTAGCATGCCAGAGATGTACGAGATCCACACACGCTCCATAGAGGAACGCATCACGTGGACGAGGCTGATACGGGAAGCTGTGAACCGCTATCCTGAAGAAGAACAGTACCGTGAACTGACTGCGAAACTGCAACAATTTCAAGATATTCTAAAGGTAAGGGATGACCAGATAAAGCAAATGCTGACAGAGAAGCAGCAGATCTTTGCTGCTCTCTACGAGACGACGACGGAGCAGGAAACCCCCCACAAAGGGCTGCTGCTCCGAGGAGATGCCACTGacctccagcagggggcgacactgCTCAGAGGAGCCATCGATGAGGCGGAAAACCTGCAGACCTTGCTCTTCTCATGGATAAGAGACCCAAACCTTTTGGATGAGGGTAAGATGCAGGGGGGGCTCGGGAGGGCCCAGACCTTTGGCGTGGCTGATGGTAACTCAGGTGCAAACTCCATGAAAAATGGAGATGCAGGTGGCAGCGAGGGCAGTCCCTCCACTAGGGACCCTCAGCTCCAGGAAAGTTACAGCTCTGAGAGCCTGGAACAGTTGGCTGATGACGACACACGGACGCCAGACTGCAGTTTAACCTCCGCTTATTTCCCTGAGGCGGAGGTGTGTGACAGGGTGATACTGCTCGCACAGAGGCTGTACAGCTTGGAAGCAATCATCACCCAGCAGGACAGCCAGATTGAGCTGCAGCATGCTTTTCAGACAAAGAGCAAGCAGCCCGCTCGTCATTACAGCAGTGTGCTGCTCGAGCAGGAGAAGCAGCGCAACTTGGAGAAGCAAAAGGAGGAACTTGCCAGCTTGCACAAGCTGCAGGCCCAGTTTCAAGAGGAGCAGCAGCGCTGGGAGAAGGACAGGGAGCGGCAGAGGATACAGATTGAGACTCTGGAGGCTCGGCTGCAACAGAGGGAGGAGGACTGCCGAGAGTGGGAGGAGAAGCTCAAGGAAGAGAAGGCTGAGCTGGAGAGGTTGAAGGACGACTATCAGCAAGACCTGGAGAGGCTGAGGGAATCCACACAATCTGTAGACAAGAACAAGGAGCGTCTGAATCAGGAGAGGGAGCGCCTAGAGCAGCTGCAGGAGAAAATAAAGAAGTACATCCCAGTACACGGCAGCTATGATGATCCTACACAACGCTTGCCTCTTTCCAGTTACCAGTCGTTCAGGGGAAGCATAGTGAACGGAGGTGGGACCTTGGATCAAAAGCACCACATCTTGCCCACCAACTCCATGGAAAGTCCTCCAAAGGTTCCACCGCGCAGGGAGAGCATCAATCCTCTGCCAGCCAAGCCCGAGCTGCCAGTCCACCTGATCAGCACCACCAACCAGGTGCACAAACCTGCCGCCGTGCAACAGAAGATCCCCACCAAGCTGGCTGCTCAGTCCAAGGGAAAGGAGAAAGGTTTCAAGAAGAAAGGGTCCCACCAGAGAACGCACAGTGCAGCTGGTATAGACGTGAACCAGGTGCTGCCCATCCGAGTGACCGGCAAAGAAGGAGGCAGTCTGAGAGCCAAAAGGAACGGCAGTCCCCAAAGAATCTACCTGTCAGGTGCCTTCAACCCACCAGGATCTATGCGCAGTATAAAAACATCTCAGTCCTTTAGCACATACAAGAGGAGCAGCAACGAGTCTCCACCACCGCCAGCGCCTCCTCCttttcccaaagatgttctCAAAACAAGCATGCCGCCTCCTCCTGTTCCCAAAACAAGCAAAGAGAaggaaatattcctttaatccTAAACCTGACTGGAGTTCGGATGAGGCCTTGTCCATCATAAAGACTTTTAGACATGGAAAGACTGATGGAGCTTTTAAAACGGTCCTGGGTGGCGCTGAGCCCCCCGGATGCAGCGGCGGTGTCCTCGCAAAATAGGCAGCAGAGATAGCTGAAGGGGAGAACGCTGGATGTCAGGCTATAttccagcaatgtacatccgttgagccagactacaTTCAGATTAGCTGAAcataaaaaagtaaagaaatgcTGATGGACATGCTTTAGAAAGATATGTACATTTGTGTTAGTGgttcaaaaaatgtaaaaagcttTTTGCACATTGGGAAAGATATTTTAAATTAAGATGTTGCGAAACCTTTCAATgccaaagttattttttttatcatttttatttttaaatgaaagtaggTAGTCTTTAACAATTAGCACTCATGTCTTAACTTCTAAGctttctttttaatgtaatgAATGATAAATACGGTATGAGGAAGCTGTAGATTTACCAACTTTTACATCGGTTTTAAATCTGAGGTGCCAAGCACAAACGTTTTATTTCAGAATGAATCGGAGAACTGTGGAATTTATACTGTGGTCCTGCTCCTCAGTATGTCTTATAATTAAATCATAAATCAATAGGGTATGTGGAAGAATCTACAAGTTGTTTGTAAATACTATGGGCTGTTTTGTGCAATTCCTGACTGGAGACAGTGAGAGTCTACGACTCCGTATCAGCAGGGTTGTTTTGAGTTTACAACCAGGCAGCTGCTGAAAGCATTTATGAGAATGTAAGAGAAATATTTCCAAGTGACATTCCCTGTTCAATAATGCTCTAGCATAATTACACAATAAACATTATGTTGATGATGGA

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814931.1 True 3704 mRNA 0.49 17 18466050 18479721

Neighbor

gene id symbol gene type direction distance location
insra insr coding upstream 12085 18394984 ~ 18453965 (+)
mfsd14a2 mfsd14a,LOC103353046,LOC100705862,LOC102785602 coding upstream 81079 18360882 ~ 18384971 (+)
myo9b NA coding upstream 105820 18328258 ~ 18360230 (+)
loxl5b NA coding upstream 173010 18288083 ~ 18293040 (+)
LOC120568295 nmrk2,LOC106914787,LOC103146068,LOC102216674,LOC106516864,LOC103479788,LOC107094235,LOC102787357 coding upstream 184230 18279102 ~ 18281820 (+)
dapk3 dapk3,LOC102784251 coding downstream 16970 18496691 ~ 18505667 (+)
prkci prkci coding downstream 42248 18521969 ~ 18556360 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding downstream 129492 18609213 ~ 18625177 (+)
LOC120568684 NA coding downstream 200879 18680600 ~ 18682419 (+)
LOC120568690 NA coding downstream 219761 18699482 ~ 18701227 (+)
LOC120567854 NA non-coding upstream 600 18458181 ~ 18465450 (+)
G115781 NA non-coding upstream 10430 18454033 ~ 18455620 (+)
G115733 NA non-coding upstream 80081 18379112 ~ 18385969 (+)
G115723 NA non-coding upstream 168541 18296146 ~ 18297509 (+)
G115705 NA non-coding upstream 203389 18262396 ~ 18262661 (+)
G115793 NA non-coding downstream 8810 18488531 ~ 18490186 (+)
G115826 sec62 non-coding downstream 152995 18632716 ~ 18646383 (+)
G115856 samd7 non-coding downstream 169053 18648774 ~ 18649804 (+)
G115862 NA non-coding downstream 203993 18683714 ~ 18684465 (+)
LOC120568663 NA non-coding downstream 209913 18689634 ~ 18692121 (+)
G115729 NA other upstream 111706 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 436155 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 982497 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1853844 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1938368 16439025 ~ 16527682 (+)
skila skil,LOC102782637 other downstream 86912 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 180708 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 240644 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 537318 19017039 ~ 19052242 (+)
emilin2a NA other downstream 967290 19447011 ~ 19465381 (+)

Expression


Co-expression Network