LOC120567856 (LOC104929871,LOC103355149,LOC100690953,LOC102207159)


Basic Information

Item Value
gene id LOC120567856
gene name LOC104929871,LOC103355149,LOC100690953,LOC102207159
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11100278 ~ 11123475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814937.1
TTTATCCATTTGGTAGTATGTGAACATAACCTGACTGCTAGCTGATCTACTATGAAGTGAAAAGGCTTTATTTAATTTCGAAACGTGTGGTCACGTCAAAGATAATCGGATCTTGAACTAAGTTGAAATGTTTACATGTAGACAGCTAGCCGTCATCGCTTTTATACTGACTGACTAGCCTGACTATTGTGAAGCAGGGCCAGTCAAGATGGACACCGCTGAGGAAGCGGACATCTGTCGGGTATGCCGGTCAGAGGGCAGCCAGGACAAGCCGCTCTACCATCCCTGTGTCTGCACTGGTAGCATCAAGTTTATCCATCAGGAATGcttACTGCAGTGGTTGAAACACAGCAGAAAAGAATACTGTGAATTATGCAAACACAGGTTTGCATTTACACCAATCTACTCTCCTGACATGCCATCTCGCTTGCCTGTCCAGGACATCTGTGCAGGGCTGGTCACCAGTATTGGAACAGCCATTAGATACTGGTTCCACTACACACTGGTGGCCTTTGCCTGGCTAGGCGTGGTGCCTCTCACAGCATGTCGTATCTACAAGTGTGTATTTACTGGCTCTGTGAGCTCTCTCCTTACTCTGCCATTAGATATGCTTTCAACGCAAAACCTGCTTGCAGACTGCCTTCAGGGCTGTTTTGTGGTCACTTGCACGCTGTGCGCCTTCATCAGCCTGGTGTGGCTTAGAGAGCAGATTGTCCACGGTGGCGCCCCTCAGTGGTTAGAGCAAAATCCACCCCCTCTAGTTCCTAACCAGCCTGACGGTCCTGCACCAGCTAATGAGGTTCCAGGTGGTAACATTGGCGTCAACGCCCAGGCTGCTGCAGACGTCGCAGAAGCCCAGCACCCTGCAGACCCTGCCCCAGACGGTCTGGCACCGGCCAACCCGCATGAAGCTGGCCACCACGGAGACGAGGCTGAACTGGACGATGAGGAAGAAGATGACgatggggaggaggaggacgacgaCGAGGAGGATGACGATGAGGAAGGCAGGGACGAGGATGCTGCTGACGCCAATAATGGAGGACAAGAAGATTTGAACTGGAACGCCCTGGAGTGGGACCGTGCAGCAGAGGAGCTGACCTGGGAAAGGATGCTGGGGCTGGATGGCTCCCTAGTTTTCTTGGAGCATGTGTTCTGGGTGGTGTCTCTCAACACACTCTTCATCCTGGTCTTTGCTTTTTGCCCGTATCACATCGGCCATTTCTCAGTGGTTGGACTGGGCTTTGAAGACTATGTCAAAGCGTCACACTTTGACGGCCTCGTCACCACCATACTGGGGTACATCCTCCTGGCTGGAGCTCTCATAGTCTGCCATGCGTTGGCTTCATTAGTGAAGTTCCAGCGGCCCAGACGCCTCTTGGGTGTCTGCTACATTGTTGTCAAGGTGTCCCTGCTGGTTGTCATGGAGATCGGCTTGTTCCCACTGATTTGTGGTTGGTGGCTCGACATTTGCTCGCTGGAGATGTTTGATGCGACTCTAAAAGACAGGGAGCAGAGTTTTGACGCAGCCCCAGGTACCACCATGTTCTTCCACTGGCTGGTCGGCATGGTCTACGTCTTCTACTTCGCCTCCTTCATCCTTTTGCTCAGAGAGGTGCTTCGGCCAGGTGTGCTGTGGTTCCTGAGGAACCTGAACGATCCAGACTTCAACCCAGTTCAAGAGATGATCCACCTGCCCATTTACAGACACCTGCGGAGGTTTATTCTCTCTGTGGTGGTGTTTGGCTCTATAGTTCTGCTGATGCTTTGGCTTCCTATCAAAATCATCAAACTGCTCTTTCCGACCTTCCTGCCCTACAACGTCATGCTTTACAGCGACGCACCGGTCAGCGAGTTGTCATTGGAGCTGCTGTTGCTTCAGGTTGTCCTGCCGGCATTGCTGGAGCAGGGTCACACTCGCCAGTGGCTCAAACGGCTCGTCCACGCCTGGACGTTCACAGCCGGATACATGCTTGACCTTCACTCCTACCTGCTGGGGGACCATGAAGACGACGACAACCAACCAAACAACAACGCTCCCGGTCGCCATAACAACAACAGGATCCCTGGCCTGGGGGAGGGTCTTCACGCTGCCCATCAGGCCATTCTGCAGCAGGGCGGTCCTGTTGGTTTCCAGTCGTACCACCGGCCCCTCAACTTCCCCCTCAAGATCATTCTGCTGGTAGTCTTTATGTGCGTGGCGCTGTTACTGGCTAGTCTGATCTGCCTTACACTGCCGGTGTGTGCAGGTCGCTGGCTGATGTCTTTCTGGATGGGCAATGCCATGGTTCATGAGCTGTACACCGCGGCCAGCGGTCTGTACATCTGCTGGCTGTCCATTCGAGCCGCCACCGTGATGCTGTCCTGGATGCCACAGGGGCGGACCATGATCATGCTCAAAGTCCACGAGTGGACGCTCATGATCCTTAAGACCCTGGTGGTGGCCGTGCTGTTAGCCGGGGTGATTCCTCTGCTGTTGGGTCTGCTGTTTGAGCTGGTCATCGTTGCTCCTCTCAGAGTCCAGCTGCACCAGACGCCTCTCTTCTACCCCTGGCAGgacTGGGCACTGGGAGTGCTCCATGCTAAAATCATCGCTGCCATCACACTGATGGGCCCTCAGTGGTGGCTCAAAACCGTCATCGAGCAGGTGTATGCTAACGGTATCCGAAACATTGACCTCAATTTCATCGTGCGAGGGCTGGCCGCCCCAGTCATATGCGTCCTGCTGCTGTCTCTCAGTGTTCCCTACACTATCTCTAAAGGCATTACACCACTGCTGGGTGTGCAGCCAGAGATGCAGATGCTGGTGGATAGGAGGATCTATCCCTTCCTGCTGATGGTGGTCATACTGTTGGCCATCCTGTTCTTCCAGATACGACAGTTCAAACGCCTCTACGAACACATCAAGAATGACAAATACCTGGTTGGACAGCGACTGGTGAACTATGAACGTAAGACAGGCAGGAGGGCGTCCAGCTCCTCACACAGCCCCTCCTCATAGACCTGCCACTGCTTTGGGATCAGTGGATCCGACTAGCATCAGCTCCTGTggtgaaaccttttttttttttttttttttcctccgtgCTCGGCTGTCAATTGCCAACTTCAAACACAACCTCTAAACTTTTGACTGCAGCCTCGACTTCTTAGTCACCGACATCTACTGCTGTCACAGGTTGGGACACAAAGACGTTGAAGAGTGAAAAGACAAAATAGTCTCAAAACTTTTTTGTGGAAATTTCTTTTTTGAATTTCTGAACATGGTTGTGAACCAACATGCAATAACAGTCCATTTTGACTGTCCATCCTGTTTAATGTGTCCGTCTTTTTTCTTCAACGCAGCTGACATTTTAAGTTGTAAttctattattttaaaataggtTTGAGTTGAAGTCGGGTCAGTTGAGCATAGAGTTTGCATCAGATTGTGCTTCCGTTTGAATGCTTGTTGTGAAATATTGTCTTGATTGTCTCTTAATAGGACGTGTTTGAAAGTTTCAGAGCTGTAGAGGCGATATGTTAACTATCACAGGAACGCCTCTCTGGTTCTATTTCATTTGTCGATTTGCCTCAAATGACACCCTTCAGCAAATTGAGGTCGTCTGTGATAAGGAGGGACACGCATGAAGTAGCAAcgtgatttgttttttaattattttatttttgtagatGTTTTTATTAGACGTGTTTTCATTGATTTTTAGTGTTACATTTCTGGAGTGAGCTGTTGGATAGAATTCCTATGAAGTAAAGATATAAGATAGAAAGTaacaaaataagaagaaaaggaATTTTTTTGACAATCTGGAAACAGCccgacatgttttttttctttcttttttcttctttttttcttaagatGTTCTCATGTGAATTTTAAACAGTCTGGGTTGTGTAATACCTCTTTGAGCATATCCACCTTCAGGAGAGGAGAGGTCATTAAGTGAAGTTTCAACTACGAATATTTAAACTGGAAGAACATTTCAGAATGTGCCTGTTACACCCTTAGACTGATAATGATTTTACAGAAATATTTATTCTGACAAAATTTAGAGAATAGTCATGCTGCTAATCAGCTGTTCAGACTCTTACATGTCTGCAAACGCTTAGGAGGCAACAGCGAAAAACAACTGTATGAACAACAAAACACTGATTTTTATTGGTGGGGGAAAGTGACTCTTGTGGACTACAGTAtagtgactgataactgactggCAAACTACAGTTGACCAATCTCAGTTTGCGCAAGGGAGTGCCGGTAATCTAACGGAGTACCAAGCACTAGATAAAATGCAGGAAATTGGTTGGCGGATGTATCTTTTACTTTTTGCTAAAACTCAGaagaatttccttttttttttctatactgTGACGTTGCTCTCATTAATCATTCAATCGATCGCTGCCACCTGCTGAGCTGAATCATATCGATCCAATCTCATCTTTAATCAATTTAGTTAGTACGACAGCGGAACAGGTCGCCTACCGAAATGCAGTGTGAAGATTTCAaattacatttcacaaaacaTTATTACGAGCTGAATGATCTGCTGTGTAGCGTTGGTTAGATTAGTATAATCGGATGTTTGTCGCTCGTTCTAAATCGCGCTGAATACTACCAACTCTGAAAAACCACGTTTGTCCATGTATGCAgatataatttaaaacaaaatcataTCTACATTTACACAGGATTGGCAGTTTAATATAGATTATCCCTTAAAACTGTTTTGTTCCTGCTATGCTACAGTACAGCGACTCTCTGTTTACATAGTTGATTGCTTTTGATTGGAGAAGCATGGAGCTACAATTGTTTCCTAGCTATCGGTTTTAACATCACTGATGTCTTTACCACATTCCTTACGTTGTAATGGTGCAACCTATTTTAGTAAATTACAAGGGATAAAACTGTTGTGTTCTTTCTAAGAACGTACGGAGGACTTTTCACACAAACTTAAGGAAGGAGTAGCTGGTGCAACCCAGTCCTGCCGGCCTTTTTTCCTGCAGCTTAAAGTTGTAtttcataaataataatttgttaACACCTGCACGCCTTCTCTAAGATACACTACTCCAATATTTAGCAACCTGAAAGAAATCCAAGGGAAATCAAAAGACTCTCTTTGATCTACTTGTCTGTTTAATAATGGACAAGTGTGTTGCCCTCAGTCCGCTCAACTAATGGCTAATGTCTTTAAAGCAGTTTAGGGAAATGAGGGGGAATTGAATGTGCCATTATCCTGTAATCACCACTAGTGTCCACAGTGGCTGCTGTTCAGCACAAGTTACATAGTCTAcctattaaagcaacactaaagaatttttcccgcttcggtccccctacaggttggaagcagaattgtccattacattacattatgcaactttgccagatcaggtagcggatctgtagttcgaatgaactggacgatgtaatgtaatggacaattccgcttccaacctgtaggggtaCTGAAGCGGGataagttctctagtgttgctttaaacagGGCCGTCTCTTCCATACTGTTCTGTCTCTTCTCTGGCACATCACTCCAGGTGCTCAAACTGATGAGCTGTAGCTGACTCAAAGAGATCCTTTAAAATCAACTCTCTACTTCAGCTCTTCACGGCTGGTGCTCCGATTTAACTGAAGGTTGACACTGACACGGTGTTTGAAAGAATCGGTCTCTTTGAGCTGTCACTGTAGCTCAGGGAGTCATGTTTCCTACATGTCTTCAAAGGTTTGTCTCGAGCTCAATCTTAAACTCAGAACAGAAGTGCATGAAATGATGTGTGTCTCTAAACCCAGCAAAAATATTGCAACCACAAGATAATGCATAGAAACGAGAGGCGGCACATTAATAATCAAAATGTTGGTTCACCAATTTACAGGAATAGGTCAACAGTACGCGAATacgagagttagatgaaaagatcAATACCATAGTCGTATCTGTAcatttaaatatgaagctagagcCAGGAGATggttagcatagcttagcataaatactggaaacagggaaatggctagcctggctccggccaaatgtaacaaaatacatacccgcacctctaaagctcactatttAACACGTTATGTCTCGTCTGTACAAAAATTGTTGGTTTCACAAAGGATTACGTACTGGAACTATTTCTTGATAGGGGGGGCAGTGACTCCCTGGAGTCtccgctggttgcctggcaacctcaacacttcccaaaatgtcaaaacaatcGCTTTAAGGTTCCAAACACTTTGCTTTCTACAACCACTTAAACTCCCAAAGCACTATTTGCATGGGAATGTAAAGTCGGTGTCTTAATCGCAGAGTGCGATCACGCAAGTGAGATATTTGGAATACAACAGTTCTCCTCTGCTCCACAACCCCCAAAAGTTAGTCCCTTCCTGTTTCTATGAAAGTTTCACAATTTTAGGTTAGAAGTTATATTCCTAGACCCACTACAGAACAAAACCATCACAATTAAACTCAAGATTTTACGAGACGTTAACATACTTCCGATGACAGTAACGAGCCCCAGCCATTCTTTTTAAACTGTTTGTTGCTGCTCCTAAACACCTGAGAGAGAAGTTTCAGATGTTTTTAGAGATCCTTTTTTTGGGGGACAAAAATGGTCAAGTAGTAATTaagatttatttagtttttttttttcatgcaaatgttttaatgtgCACTTTATACCACAATTTGCAATCATTTCAGAATCCATTCATTGTAACACCGTCAACACTTGTTCTTTCCCTTTCACCGAGACTAAAACATGTCAGGATGTTACTGCGTTGACTCTGCACCGTGGGTTTACTTAAAAGATGAATTTCAGTTTTGCATCCACTTTTGACACTGCATTTGTGTGAGAACTTTTACAGTAGGAGTTTGACGAATATAACCTGCTTTTCTATTGATATGGATTGTGAATTACATTAACTTCAGTGCTGACAGCTGTAATGCTGCTGTGTGGAATGctcacattatatatatatatatatatatatagtctcgctttgccagaccctcctccaaagtgcgctgaaggagggtctggcttaGGCCTGGCCGATATGATGCTATAAAGTGACCTTTAAGTATCTTCGTGAACTGAGCTGGACACATCAAATTTTGGTCATGAATTTCAATTTCTAGAAGCAAAtgatttctatttttatatGTGCAAAAACGGCAGTGCGTTTACTGTAACAAAGGTACACTCTAAAGTCTATTAATTGTTGGTTCAGTaatatgaaacaaaataaatagttgaaatga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH6-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814937.1 True 7292 mRNA 0.45 26 11100278 11123475

Neighbor

gene id symbol gene type direction distance location
LOC120567862 LOC104961053,LOC103355148,LOC107384202 coding upstream 62 11096777 ~ 11100216 (+)
LOC120567857 LOC103355151,LOC102312891,LOC104961060,LOC101474626 coding upstream 4791 11083863 ~ 11095487 (+)
LOC120567859 NA coding upstream 21404 11077232 ~ 11078874 (+)
xrn1 xrn1 coding upstream 182773 10892377 ~ 10917505 (+)
cop1 rfwd2 coding upstream 218626 10868042 ~ 10881652 (+)
LOC120567621 LOC103360515,LOC104929875 coding downstream 4544 11128019 ~ 11139884 (+)
lyn lyn,LOC100711419,LOC102310923,LOC101477890 coding downstream 222970 11346445 ~ 11364696 (+)
urod urod coding downstream 241894 11365369 ~ 11376582 (+)
toe1 NA coding downstream 407363 11530838 ~ 11537187 (+)
tmem53 tmem53,LOC102777675 coding downstream 414579 11538054 ~ 11540262 (+)
LOC120567863 NA non-coding upstream 44472 11046556 ~ 11055806 (+)
G113498 LOC104957117 non-coding upstream 172035 10926456 ~ 10928243 (+)
G113492 NA non-coding upstream 212611 10886992 ~ 10887667 (+)
LOC120569030 NA non-coding upstream 257058 10840517 ~ 10843220 (+)
LOC120569032 NA non-coding upstream 261175 10837503 ~ 10839103 (+)
G113619 NA non-coding downstream 395825 11519300 ~ 11524768 (+)
G113620 NA non-coding downstream 401503 11524978 ~ 11525250 (+)
G113621 NA non-coding downstream 402536 11526011 ~ 11579470 (+)
LOC120568871 NA non-coding downstream 459429 11582904 ~ 11694250 (+)
G113682 NA non-coding downstream 460961 11584436 ~ 11584636 (+)
LOC120568835 NA other upstream 213800 10885595 ~ 10886478 (+)
G113130 NA other upstream 2097710 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 2197431 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 2274467 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 2290819 8789209 ~ 8809459 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 209093 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 999194 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 1033974 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 1459167 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 1778064 12901539 ~ 12907243 (+)

Expression


Co-expression Network