pitrm1 (pitrm1)


Basic Information

Item Value
gene id pitrm1
gene name pitrm1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38819047 ~ 38843071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814943.1
TTGTAGAGTTACATGACCATAGGATAGGTGTTACTGAGCACAAAGCGACTGTCAGATCTGCGACCTGCGCAGGTGTGCCGGTCATGTATGTGCGCAACTGTCCCAATGTGTTAACTGTACTACACACGGCATGACAGGGCACCGTGCCGGGATGCGCAACCCAAATCATGTGGAATTATTGACCAAATGTAATTAGAATTGTCAGTTTTTTTCGAAAGCCGAACATACTGGAAGTAGACACACTTGAATAATTTTGCCTTGCCTTTTAAGTGACAAAGCCATGTTTAGGCAAACGAAGGCGGTGCTCCAGAAACTTCGATGTCTAAgTTTCACTGGACAGCAGCATACGTGGAAGCTAAAGAGCACTTCAGCAAAAGAGAGGGCCTGTCAGTACCAACCAGGACAGAAAATCCATGGCTTTACAGTCACAGAGGTTGTAGTGGTCCCTGACTTGTTTCTCACAGCAGTGAAGTTAACACATGATACAACTGGAGCTCAGCACCTCCATGCAGCCAGAGATGACTCCAATAACCTTTTCAGTGTCCAATTCAGAACGACTCCCATGGACAGCACAGGGGTCCCCCACATCCTGGAGCACACGGTGCTTTGTGGATCTGAGAAGTATCCCTGCAGAGACCCTTTCTTCAAGATGCTTAACAGGTCCCTGTCCACCTTCATGAACGCTTTCACAGCCAGTGACTACACCATGTATCCGTTCTCCACCCAAAATCGGAAGGATTTCCAGAATCTTCTGTCAGTCTATCTGGATGCAGTTTTCTTCCCTTGTTTACGAGAGCAGGATTTCTGGCAGGAGGGCTGGAGGCTGGAGAATGAAATCCCCACCGATATCAACTCCCCCCTGGTTTTCAAAGGAGTGGTGTTCAATGAAATGAAGGGGGCTTTTTCGGACAATGAGCGTGTGTATGCCCAGCACCTCCAGAACAAGCTGTTTCCAGACCACACCTACTCTGTGGTGTCAGGAGGGGAGCCTCTAGCCATCCCTGACCTCACCTGGGAGCAACTCAAACAGTTCCATGCCACACATTACCACCCCAGCAATGCTAGGTTCTTCACCTATGGAGATTTGCCTTTGGAGCAGCATCTGAAGCAGATTGAAGAGGAAGCTCTGTCCAGGTTTAAACGCATCAACCCAAACACAGAGGTCCCCTCCCAGCCACACTGGAGCAGCCCTAGAGAAGAGCATGTAACCTGCAGCCCTGATGCTATGGCTCCAGATCCAGCCAGGCAGAACACTCTGTGTGTAAGCTACCTGCTGGGAGACATCACTGACACGTTTGAAGGATTCACTCTCAGCCTGCTGTCATCTCTAATGATCTCTGGACCAAACTCTCCCTTCTACAAGGCTCTCATTGAACCCAAGATAGGAACCGACTTCTCTTCTGTTGTAGGATATGATGGCAGCACCAAAGAGGCGTCGTTCAGCATCGGACTGCAGGGAATGGCTGAGGAGGACACAGAGAGGGTGAAACAAATCATCAGCCAGACCATCGATAACATCATAGAGAAAGGCTTTGAGGAGGAAAGAATCGAGGCTCTCCTCCATAAGATTGAGATCCAGATTAAACACCAGTCCACAAACTTCGGCCTGTCTCTGGCCTCGtACATTGCATCGTCGTGGAACCATGACGGCAACCCGGTGGAGCTGCTGCAGATCAGCGACAGCGTTGCAAAGTTCAGGCAGGCCCTGAAGGAAAACCCTTGCTTCTTGCAGGAGAAAGTTATACACTACTTTAAGgagaacacacacagactgactcTGTCCATGAGCCCAGATGAGGCGTACCTGGAGAAACAGgcccaggctgaggaggagaagctCCAGGGAAAGATCCAGGCTCTGTCTCACAGTGACCGAAAAGAGATCTATGAGAAAGGTCTAGAGCTGCTGGCTACTCAGAGTAAAACCCAGGATGCCTCCTGTTTGCCTGCACTCAAAGTGTCTGACATTGAGCCCACAATACCCATCACTCCTGTTCAAATCAGCACTGCAGGCGGTGTACCAGTTCAGTATTGTGAGCAGCCCACAAACGGCTTGGTTTACTTCAGAGCCATGTGCAGTCTCAACACCCTGCCAGAGGACCTCAGGCTTTATGTCCCGCTCTTCTGCAGTGTCATTACTAAGATGGGCTGTGGAGCTCTGGACTACAGGCAACAGGCCCAGCAGATGGAGCTGAGGACAGGGGGCATGTCTGTCTCCACCCAGGTCACCCCTGACTCCACCCAGCTGGACATGTATGAGCAGGGTGtcctcctgtcctcctcctGCCTGGAGAGGAACCTTCCTCACATGTTTCAGCTGTGGAGAGACATATTCAACAGCCCGCACTTTGATGATGCGGAGCGCCTGAGAGTGCTGGTGATGATGTCAGCGCAGGAGTTGGCCAATGGGATCTCCTACTCTGGTCACATGTACGCCATGACCCGTGCAGGCCGACATCTTACTCCAGCAGGAGACCTGCAGGAGACTTTCAGTGGGATGGAACAGGTGAAGTTTATGAAGAGGATAGCTGAGATGTCAGACCTCAGCCAAGTCATTCGGACACTACCCAGGATCAAGAAACACCTTCTCAACCCTTACAACATGAGGTGTGCAGTGAACACAACTCCACAGAAAATGTCTGACACAGCAGCCCAGCTGGAGAGTTTTATGAAGGAAGTCGCCGATAACAGAAAGGAACGCAAACCTGTCAGAAGTAATATTATTGAGAGGCCACTAGACCCCCTGGATGACTCGCGACTGAGTAGGAAACTCATCTCTGAGCTGAATTTCCAGCCGTGTCAGATGAAAACCTTCTTCCAGCTGCCCTTCCCGGTCAACTTTGTCAGCGAGAGTATCCGGGCGGTGGCGTTCTCCCACGAGGACTACGCCAGTTTGTGCATCTTGGCGAGGATGATGACGGCCAAATTTCTTCATGGAGAGATCCGGGAGAAGGGGGGGGCCTACGGGGGCGGGGCCAGGATGGGAGGAGGTCTTTTCTCCTTCTACTCATACAGGGACCCCAACTCGGTGCAGACCCTGTCTGCGTTTCGTAAAGGTGTGGACTGGGCCAAGTCGGGACAGTTCAGCCAGCAGGACATCGATGAAGCCAAACTGTCAGTCTTCTCAGCTGTCGACTCACCTGTGGCCCCCTCAAGCAAAGGAATGGGTCGCTTCCTCAGTGGAGTCAGCGATGAGATGCTGCAGAATCACAGAGAGAGACTCTTCGCTGTCACTCACAAAAACCTGGTGGAAGTGGCCGAAAGATACCTGGGCGTTGGGCAGAGGACGTGTGGTGTTGCTATCCTGGGCCCAGAGAACCACACCATTAAAAAAGATCCCTCATGGATCGTAAAATAATCCCATCAGAAGGTATTTTATCATTGAAAACTTCAAGATGAACTATGTACTGAAAATTCCAAGGAGATCTTCTTGCTAGGATTTCATCTAACTGGTGGCAGACCAAGAGGAGGAACAGGGACTGATTAGTGTTGTAGTCGTCATCTGATTCTTCAGATTGTTACTTTTCTATTTATATGTTCTGTTAAATGTACATATCAATGAAAATGTGATTATTGCATTAAAGTATAATattggaaaaacaaaa

Function

symbol description
pitrm1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Orthologous to human PITRM1 (pitrilysin metallopeptidase 1).

NR:

description
PREDICTED: presequence protease, mitochondrial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06972 PITRM1, PreP, CYM1; presequence protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814943.1 True 3605 mRNA 0.50 27 38819047 38843071

Neighbor

gene id symbol gene type direction distance location
LOC120568674 klf6,LOC108246170,LOC103374282,LOC106525942 coding upstream 190637 38620336 ~ 38628410 (+)
trnas-cga_7 NA coding upstream 621925 38197041 ~ 38197122 (+)
LOC120567717 NA coding upstream 715337 38102577 ~ 38103710 (+)
LOC120569077 LOC103371209,LOC100691542,LOC101487415,LOC102308758 coding upstream 720801 38039081 ~ 38098246 (+)
LOC120567716 NA coding upstream 1220622 37597814 ~ 37598425 (+)
frrs1a NA coding downstream 643059 39486130 ~ 39522532 (+)
G121053 NA non-coding upstream 136795 38681710 ~ 38682252 (+)
G121043 NA non-coding upstream 269009 38549670 ~ 38550038 (+)
G121041 NA non-coding upstream 270421 38548426 ~ 38548626 (+)
G121034 NA non-coding upstream 384047 38434747 ~ 38435000 (+)
G121032 NA non-coding upstream 388942 38429661 ~ 38430105 (+)
G121063 k6pp non-coding downstream 13237 38856308 ~ 38860731 (+)
G121185 LOC103364078 non-coding downstream 558324 39401395 ~ 39406398 (+)
G121058 NA other upstream 63116 38755684 ~ 38755931 (+)
LOC120568367 LOC103371210,LOC101487706,LOC100534480,LOC102208811,LOC102309261,LOC104937382,LOC106522909 other upstream 799979 37989565 ~ 38019068 (+)
G120914 LOC103396775 other upstream 1513033 37302894 ~ 37306014 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other upstream 1731604 36879918 ~ 37087443 (+)
G120717 NA other upstream 2412358 36406121 ~ 36406689 (+)
G121171 NA other downstream 548901 39391972 ~ 39392776 (+)

Expression


Co-expression Network