shhb (LOC104930803)


Basic Information

Item Value
gene id shhb
gene name LOC104930803
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7866394 ~ 7870117 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814952.1
gagagtgagatggACAGTCAGTCAGACGGACCTACAGTAGTGTAGTTATGGCACCTGCACTGCTCCAATTGAAGTGGGAGAGCTAGCGGGATATAAGGCTGCAGGACTGTCCAGGTAGACCAAAAGATGGTCCTGATGAGAGTGATGCTGTCGGCGTCCCTCTGCCTGCTGCTGACGTCCGTCGGCTCGGGCTGCGGACCGGGCAGGGGACACGGGAAGCGCAGGCACCCCAAGAAGCTGACGCCGCTGGCGCTGAAACAGTTCATCCCCAACGTGGCGGAGAAAACCCTGGGGGCCAGCGGCAAGTGCGAAGGCAAGATCACGCGCAACTCGGACAGGTTCAAGGACCTGACTCCCAGCTACAACCCCGATATTATTTTTAAGGATGAGGAAAACACCAACGCGGACCGACTCATGACACAAAGGTGTAAGGACAAGCTGAACTCTTTGGCTATTTCAGTCATGAATCAGTGGCCCGGGGTTAAACTTCGAGTCACGGAGGGCTGGGATGAGGACGGCCATCATTCTGAGGAGTCTCTGCACTATGAGGGCAGGGCGGTGGACATCACCACCTCCGACCGGGACAAGAGCAAGTACGGCATGCTGTCCAGGCTGGCGGTCGAGGCGGGCTTCGACTGGGTATACTATGAGTCCAAAGCCCACATCCACTGCTCTGTGAAAGCAGAAAACTCGGTGGCAGCTAAGTCTGGAGGTTGCTTCCCTGGTTCGTCCATCGTGATCCTGTCAGACGGAAGGACTAAACCACTGAAGGAGCTCCAGTTGGGGGACAAGGTGCTGGCCGCCGACCAACAAGGAAATCTTGTTCCTAGTGACTTTCTAATGTTCATGGACCAGGACCAGCAGATTATGAGAGAGTTCCACGTCCTGGAGACTGAAGAGCCACGCTGCAGACTAACACTGACTGCAGCTCACCTGGTCTTTGTTATGAGCAACAACAACGGCACCAACAGCAGCGACATTAGGGCCGTGTTCTCCAGCAATGTAAAAGTAGGACAGTGGCTTCTTGTTGTTGGGAATGACCGTCCGGACCACCTCATTCCTGCAAGAGTGACAAGAATTCGTGTGGAGAAATATCGAGGGTCTTATGCACCCGTAACATCTCACGGAACCATCATAGTTGACTGGGTTTTGGCATCTTGCTATGCGGTGGTTGAGGATCATGACCTTGCACACTGGGTTTTTGTGCCAGTCCGGCTGTGGCGCTCATTCTTGTCCCTGGTCGGGATGGTGAAAGAGCTCAGCAGTGTGTACCAAACGGAGGGCGTCCACTGGTACCCCGAGCTCCTCTACCATGTGGGAAGTTGGGTTCTGGACAGCAGCTCTTTTCACCCACAAACGGGGCTTTAAATTGACACACGCCCACCTGCCAAATGCAGGTAGAAATGAACTTGGGCGGGTAACATTGTAAAGTTGCTAGCCaatacattcaagccattgccaaatgagttgttacaaagctaattaagactatcagctccacacaactctctctggattt

Function

NR:

description
tiggy-winkle hedgehog protein-like

GO:

id name namespace
GO:0055002 striated muscle cell development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0060956 endocardial cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:0048663 neuron fate commitment biological_process
GO:0030900 forebrain development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0042063 gliogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K11988 SHH; sonic hedgehog

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814952.1 True 1519 mRNA 0.54 3 7866394 7870117

Neighbor

gene id symbol gene type direction distance location
cnpy1 LOC103363935,LOC102314352 coding downstream 29448 7817747 ~ 7836946 (-)
paxip1 paxip1 coding downstream 98558 7741684 ~ 7767836 (-)
LOC120567743 NA coding downstream 242286 7622114 ~ 7624108 (-)
LOC120568977 NA coding downstream 633973 7230801 ~ 7232421 (-)
c11h5orf22 LOC104934799,LOC103375412 coding downstream 821856 7030085 ~ 7044538 (-)
asph asph,LOC103370744,LOC108250906 coding upstream 34088 7904205 ~ 7938777 (-)
ttpa ttpa coding upstream 81895 7952012 ~ 7961067 (-)
LOC120568123 xpr1,LOC101080083,LOC103396762 coding upstream 101832 7971949 ~ 8022906 (-)
tmem70 NA coding upstream 192966 8063083 ~ 8067449 (-)
LOC120567605 LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359 coding upstream 209179 8079296 ~ 8085926 (-)
G112779 NA non-coding downstream 8319 7857850 ~ 7858075 (-)
G112778 NA non-coding downstream 10505 7855672 ~ 7855889 (-)
G112764 NA non-coding downstream 63842 7802340 ~ 7802552 (-)
G112738 NA non-coding downstream 132018 7710610 ~ 7734376 (-)
G112716 NA non-coding downstream 256160 7608900 ~ 7610234 (-)
G112871 NA non-coding upstream 31463 7901580 ~ 7903890 (-)
G112887 NA non-coding upstream 53985 7924102 ~ 7926192 (-)
G112877 NA non-coding upstream 94322 7964439 ~ 7966305 (-)
G112876 NA non-coding upstream 97316 7967433 ~ 7969334 (-)
G112902 NA non-coding upstream 173993 8044110 ~ 8045481 (-)
cdh6 LOC103366829,LOC104926815 other downstream 702724 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 876272 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1129882 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 1687508 6172281 ~ 6178886 (-)
G112328 NA other downstream 2013947 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 617350 8487467 ~ 8487539 (-)
G113070 NA other upstream 910335 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 1244267 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1530670 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 2170569 10040686 ~ 10267078 (-)

Expression


Co-expression Network