LOC120567870 (LOC104929640,LOC103364379)


Basic Information

Item Value
gene id LOC120567870
gene name LOC104929640,LOC103364379
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27363553 ~ 27381615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814962.1
GAGGAGCTGTCGGCAGTGAGATCATGGGAGAGTCCACGCTTGGTGAAAGTAGGTTAGCAGGGTAGACTGAGAGGAAAGCAGGCAGAGAGCAAAGGGGGGGTCCGATCACCGGTTGTCCACCGTTGGACTAGTCTGTCAAAAAAAAGTTGAGCCAAATCTATTCGCCAGTGCGCCGAGGCTGTAACGATGCGATTCAAAGCGACTTTCTTCACCCTTTCATTTCGCTCGGACTTGACCGAGcaatagaggagaggagttttgggtagttcttcttttttttttttttgccgttcTTTACCGCGAGCTGTCTGCAGCCGGGAAGAAGTTAATATTTACAGAGCCAGTTCGCTCTGGCCCCAGCGGTTTATTCTCCTCTATTCTGTCACCTACATTAACCACATGTAGCCGAGTGGTTTTACCGTCCAGccaagagaaaagaaaacatcacAATGAGAGCTCAGATCGAGGTCATCCCCTGTAAGATCTGTGGGGACAAGTCCTCAGGAATCCACTATGGAGTCATCACCTGTGAAGGCTGCAAGggttTCTTCCGTCGCAGCCAGCAGAACAACGCCATGTACTCTTGTTCCCGCCAGAGGAACTGCCTGATCGACCGAACTAACCGTAACCGCTGCCAGCACTGCCGCCTACAAAAGTGTCTGGCTTTGGGCATGAGCAGagatgCGGTTAAGTTTGGTCGTATGTCCAAGAAGCAGCGTGACAGCCTCTACGCTGAAGTGCAAAAACACCAGAAGTCCCAGGAGTGTGTGAGTTCTGCAGGCGGGGGCCCCACTGCTCTGTCTTTACCCAAGAAGGACGGTGTCTGTGGCGGGGAGGATGGCGAAGAGGCTCTGAGCCGGTCCTACAGCAGCGGGGGCTCCACCCTGAGCGACCTGGATGACATCGCAGCGCTGCCTGACCTGTTTGACCTGCCGCTGACTCCCGAGGAGGCCAGCAAGTACTGCAGCCTGGAGGTGGTCGGCAGCGGAGCCAGCACTGGGAACACCTCCAACTCAtcgtcctcttcttcctcccccTCATCCCTGTCCAATCAGAATTCCCCTCGGCAGACTATGCTGGACGGGGCAGACAGCAACGGGATCCAGCTCCTGCATACACACTCTCACACGCACCCGCTGCTGGGAGACACACGTGCACTGCTGGACCATCTGCCTGATGACTGCTCAATAACAGACCTTGAGCGCATCACTCAGGGTATTGTTAAGTCTCACTTGGAGACGTGTCAGTACAGCAGTGAAGACATGAAGAGATTCACCTGGGTACAATACGCACCTGAAGAAACGCGTGCTTATCAAAGCAAGTCAGCTGAGTGGATGTGGCAACAGTGTGCACACCACATCACTAATGCCATCCAATGTGTGGTGGAGTTTGCCAAACGCATTGCTGGCttcatggacctgtgccagaaCGATCAGATTATATTGCTGAAAGCCGGCTGTCTGGAGGTCCTGCTGATACGTCTGTGCCGAGCTTTCAACGTCAACAACAGCACTATTTTCTTTAATGGGAAGTTTGCCCCGGCTCAGTTCTTCAAAGCACTTGGTTGTGATGACCTGGTCAGTGCAGTGTTTGATCTGGGGAAAGGATTCTGCCGTCTACAGCTGTCTGACGAAGAGATGGCTCTGTTTAGCGCTGCCGTTCTTCTTTCTCCTGATCGACCCTGGCTAACAGAAGGCCAGAAGGTTCAGAAGCTCCAGGAGAAAGTCTACCTGGCTCTGCAGCACAGTCTACACAAGAGTGGTGCTTCAGATGAGAAACTGGACAAGATGGTGTCCAAGCTGCCCACAATGAAGTCTATCTGTAACCTCCACGTTGATAAACTCGAGTTTTTCCGTTTGGTCCACCCAGATACCGCCTACAGTTTCCCACCACTGTACCGGGAAGTGTTTGGCAGCGAGATGTCTCTGCCGGACTCCACCAACagctagacagacagacagaccgacagacaaaaaaaagagagatgaacAGAGTATATTAAGAAGTAGGGAAGCAaaaaaggagagacagagaaggataGAGATGTTGAAGCTCAACAACCAGCAGTTACGAGACAATCCAGAACTTTAAATACTCCGTCTCCAATGATCCCAAAGTAGTCCTCCACTTTCCCAGCAGGCAAAGCACCTTACACTACAGACCACACATGGTCATGGTCCTCTGCATATTGTAGCATTAACACCAAGCGGATGGGCATCCTAATAATAACAGCCCACTAGCCATGAGACAGCTCCAAGCTTTAACACTTGTTTAACATCAGATCCACTGAGGATCGCCCAACCAGTTATGAATGTACCTCACCAATAAGCACCAGTGCACAAGCCAGAACCCAACAACAGTGAATGTACAACACTGCCACTCTGAGACAGAGTTTTacatagtattagtattagaATGAAGTTGTATCAATCCACAGGTCTCACTATTAATACAGCTCTCAGTCAATATTTCTTTCTATATTAGGCTAATACATCTCAGTTTGGTACACACGCGTATTCATACAGACAATATCCTTGTACTGACCATCAATTAGGGACCAAGAGTCATTTTctctgatataaaaaaagaaacacacagataTGATATGACTCACGGCTTAATCAGCTGAGAACCAGCTTCCCACACATTTAGACGGTGTTCGGTGCTGCCTTTTTGTAAACTCTTGTAATGCAATGAAAAACCTCAGTCCCACGCACCCCTTTCCTTGTAAATGCCACTTAGAGACAGGACAAGATGAAATTATCTTTAATTTATATACACAtttataaacaaatattttaaataaaaatgtaaatagatGACTATATGAGCATACGGAGAGAGTTAGAATGTGTGAGTTCAGTtaagagagaaggggagagaaaaGGTGCATCGTAAGAGATAGAGGAAAAGATGAATATTTCAGGAAAACTAATATTTGGACTCAAATCGTTTTCTGGACTACTTCCTCTCTTTTGACAGTACTCTCAGGTTTCCATGGCAACGGCCCCCTCTTGCCCTGATGGCAAATCCAGCTGGGTTATAGGCGCGGTCATGACGCAAGCGACGGGGGTGGACACCTGTTGGTGTTGCAGATGCGAcacgaaaaaaaacattgccttGGTCTTGCATTTAAACCGAGAGATTTCCGTCTGCGCTGTTGCTGCTGACACCCTCGGCTAAAATGACAAGAGGACAAACAAGGACACTAAGAAAAAGTCAAAAGCGAGGCAAAAGAGGACTTCATGAACGGTATAATAAAATACACAGGGTTTCCCTACCTGTTTCTAACCAGCAgtcagtacagtatgtgtagtaTAATTGTCTTTCACTCATAATTGTTTCAGTTGGTTACAGGCCGGAACGACGATGATCCATAATATGTATCGTAATCCCTCCATGCTGGTTGGAACAACTGTATTATTTTGTACATTTGCTGTTCCTATCTCCTTTAGTCCCAAATCCAAGCACTTGTACTTTCCTCTTCCTCACTGGACACTAGTCTAAGGCCAGACAGAGCTACCAGCTGCCCCCCTGAGTTGGGCCTCAAATGCCAGTAAGACTTTTCAGTCAATCtgctttattatttttgtttttttattcaatatcTGTCACACAAGGTCACCCATAACTGTTTACATTTTTCATGTACGTAAATCACACGCTCTCTGAAGGTTGTTATCACattgagatgatgatgatgataatgtcTTACTCGGGGTGCTGTGAAGTTCTTGAGCAGAGTCTGAGTACCTGCCTCTCAGGGAGCTAGCTGTGGTCTCTTGTCCCTTTTATTACCAGTGTCATCTTTTAGCCCCGTGCTCCTCGCACCTTTGCACCTAATATGAGACCCTTAACCATAATCACTGTGGACGTAAGTtctatttttgtgaatgttacACTAAGTGTCAAAACCCTTCCTGTTTGTCCTAATATCGTGACATCAAATTTACAAAACataggaataaaaaaaacaaacaacaacaacgaaTAAATCAGTTAGTTAAATATGAATTCGTTATAAGGGTTTAATGTTTCTttttgctgtgattttcatttgtCTTTTATCCACCTTTTTCTTTATGTGTCTCCACTTTTGTGTTGAAAAGTCAgtaatctattttttttattgaaaaaagattaggtaaaaacaaaaaagaatagTTTGTCTCCCTTCTCTTTCCCTGTTTGACAAAATGTACAAGAGGTATATTAATAGTCCAAAAGTAACTGAGTTACACAGCTCGATATATATTGTTGTCCAATGGGATACATTATATGTGGTTTTAAGAATGTAATAAatggtttctttttcttttgaaa

Function

NR:

description
PREDICTED: nuclear receptor ROR-beta-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814962.1 True 4323 mRNA 0.45 10 27363553 27381615

Neighbor

gene id symbol gene type direction distance location
LOC120567871 sh3gl1 coding downstream 3232 27344562 ~ 27360321 (-)
stap2a LOC103364380,LOC104964213 coding downstream 19271 27339111 ~ 27344282 (-)
sema4e LOC103364382 coding downstream 25457 27329082 ~ 27338096 (-)
LOC120567993 LOC104929644,LOC104964218,LOC103364385,LOC106951435 coding downstream 45958 27310305 ~ 27317595 (-)
sirt6 sirt6 coding downstream 55893 27295370 ~ 27307660 (-)
LOC120568100 LOC103364377,LOC100710107,LOC102776083,LOC107384130,LOC103151230 coding upstream 17831 27399446 ~ 27432930 (-)
LOC120568101 NA coding upstream 60531 27442146 ~ 27454453 (-)
LOC120568140 LOC103364374 coding upstream 73801 27455416 ~ 27541967 (-)
fem1a LOC103364373,LOC104929636,LOC107384124,LOC104958134,LOC100699443 coding upstream 164931 27546546 ~ 27548620 (-)
LOC120567816 LOC107100918,LOC104958144,LOC103364372 coding upstream 171345 27552960 ~ 27556009 (-)
G118401 NA non-coding downstream 68253 27294283 ~ 27295300 (-)
G118339 NA non-coding downstream 163864 27198582 ~ 27199689 (-)
G118337 NA non-coding downstream 165905 27174552 ~ 27197648 (-)
G118482 NA non-coding upstream 197353 27578968 ~ 27609694 (-)
G118483 LOC103364371,LOC101475014,LOC102207447,LOC108239424 non-coding upstream 220786 27602401 ~ 27605241 (-)
G118504 NA non-coding upstream 246271 27627886 ~ 27664712 (-)
G118608 LOC103372824 non-coding upstream 713408 28095023 ~ 28099810 (-)
G118613 NA non-coding upstream 762813 28144428 ~ 28145034 (-)
cirbpa cirbp other downstream 538983 26819838 ~ 26824570 (-)
G118175 NA other downstream 697601 26661621 ~ 26665952 (-)
camk2n1a camk2n2 other downstream 1043958 26315770 ~ 26319595 (-)
G117732 NA other downstream 2440235 24922203 ~ 24923318 (-)
G117560 NA other downstream 2827057 24499380 ~ 24536496 (-)
LOC120568986 epha4,LOC100711706 other upstream 261712 27643327 ~ 27675360 (-)
G118524 NA other upstream 331852 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 764656 28146271 ~ 28152770 (-)
G118764 NA other upstream 1604476 28986091 ~ 28986319 (-)
G118856 NA other upstream 2038764 29420379 ~ 29420652 (-)

Expression


Co-expression Network