LOC120567871 (sh3gl1)


Basic Information

Item Value
gene id LOC120567871
gene name sh3gl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27344562 ~ 27360321 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814964.1
TCTCCACCAGGATGAAGGAGCCTCCCACATGAAGCTGGGGCCAGGAAATTGTGGTTGCCTAGCAAGTTTTACCTCCACGGTGCAAAGTTTCAAGACGTGTTGCTCGGCTGCTGTCTGTCTTTGCTGTAAACTACAAACTCGCAGCAACtacttttaaatacattttccccGTCGAGGTCCAGGTGGCAACATTGACGGTGCAAGATGTCTGTCGCAGGATTAAGGAAGCAATTTTACAAAGCGAGTCAGCTGGTGAGTGAGAAGGTTGGAGGTGCAGAGGGAACCAAACTGGATGAAGACTTCAAGGACCTCGAGAGgAGAGCAGATGTTACCAGCAAAGCGGTGGTGGAAGTCATCAGTAAAACATCGGAGTACCTCCAGCCCAACCCGGCAACGAGAGCTAAGCTGTCCATGCTCAACACAGTGTCCAAAATGCGTGGGCAGGTCAAGAGTCCGGGCTACCCTCAGCCTGAGGGCCTCCTGGGGGAGTGCATGACTAAGTATGGACGGGATATGGGCGAGGACACCAGTTTTGGTGGGGCTCTAACAGACATTGGGGAGTCAATGAAGAGGATGGCCGAGATCAAAGACTCTCTGGATATTGATGTAAAGCAGAACTTTATTGACCCGCTGCAGGCAGTCGCTGAGAAGGATATCAAAGACATTCAGTACCACCTGAAGAAGCTAGAGGGCCGCCGTCTGGACTATGATTATAAGAAGAAACGTCAAGGTAAAATCCAAGATGACGAGATCAGGCAGGCCCTGGAGAAGTTCCACGAGTCCAAAGAAATGGCTGAAGGCTCCATGTACAACCTGCTGGAAACAGATgTGGAGCAGGTGAGTCAGCTGTCTTCTTTTGTGGAGTCTCTGCTGCAGTACCACAGACAGGCCACACAGGTCCTGGAGGAGCTTTCTGACAAACTGAGAGAAAGGGTGAATGACGCTCAGTCTCGTCCAAGGCGCGAATACACACCCAAACCCAGACCATCCTATGACTATGGAGAGGTAGAAAACTCTAACGGAGGATACTCACCAGCTGCAACAACCCCTCCAGCTTACTCTCCtgGTCCATCCTTCCAAAGAACGTCAATCAAGAGCAGACGGCCTGAGCCATGCTGTAAAGCACTGTATGACTTTGAGCCAGAGAACGAGGGAGAGCTGGGCTTCCACGAGGGTGACATCATCACCTTGGTCAATCAAATCGATGAGAACTGGTTCGAGGGAGCCATTCGCGGAAAATCGGGATACTTCCCCAACAACTATGTTGAAGTGGTGGTGCCTCTGCCacactaaaaaaaacagcaaggcAAGAGGTGAACAGCACGATGGAGAGGATGAGAAGGGGGGATGGTAGTGGATGATCAACTCTCAATAACCAAAATATATCTTTTTCTTTATTGCAATTTAAGACTAAACATATCAAGACAGGAACCTAATTTGTACCTAGGAGTTATTTGAgtaaagagatttttttttttatactgtcaGATTAAAAGATGTAATGGATTTTTAAAAACAGTATGGACAGGGGGATGTTCAGTCAGAAAAATGACAGTGTAATATTTAAGTATTTACTTTCATTCTCTATGCACCTGTGCACTTTGTACACTACACATTCATCACAAGAACTGATGAAGAAAGACCAAGAGAGAATGACATCTGTAATGACATGTCCAGCAGTATCCACAAACACTAAGAAGTGCAACTAGTTTATTCTTATATTCTAAACCTATTTTATATTCACAAGATGACCTTTCTTGCTCTGTGTATTGTTCATATGTTactgcacacatgcatgtatACACATGCATTCTTCCAAGCACTGTTTTCTACACTCCCAGTTTTCACTTCTGTGCCTTCAGGCTTTAGTACTGTTGTCAGCATGGACCGGTTAGAGTCAACATGGAGGACTGGCTGCCTTCTGTCCATGAGACTATCCTCCACTGCCATCTGGTGGTCATCTAGAGATCATTCTTAGCTATTTGCACCGTCATACGGCCTTTATTATCTCTTACCAAATCCACGTTGGTTGGCTTGTCTTATGTTTAGGTgtggatttgttttttcttcctaaTATAGATATAGAAAACTTTAAAAATGACTGGAGCCAGTCAGCATGTTTACATTGACTGGCAGctgtattaaatgttttttcattCTTACACCACCGCTGATGAGAGAAACTGGCAGTTTTACAAACGGCAGTTCATTGGATACCAAAACAGTTGTTTTATAGCGGAGTCTAAAGAATTGGAGGGCGTCCATAAATATGCTTAGTTTTATAACCTTTATCACACTATTTGTTGCTACgttgtacattttttattttacagacagCCCTTCCAATGTTTCTCACTGCACTCCACTCACTCCTCTTAGAGCTGATTCCCACATTGGACGAGACTGACGTTTGTCATTAAAAGAAAACGTTTGtcattaaaagaaaacacatttcataCAGCCAGATGTGGGCAAATATGCAACATGAAGTTAAATGTTTTTAGCCTTACGAAAATGTTTACTTCACGTTACTTCACAAAAGAAAAGCAGACATTTGTTTCCACAAGAGTGCAACCCACAACAATGTAACATGATTCAGCCCCATCCCAAATATTTTGTAGCACTACACTAAAGCCATAAGCCTAAGCGTCCTTCAGTTCCTCTATTTTCTCAGGCTGTATTGATACTGCTGGCAGTGTCACTCACAATGTTTTGTGGGCTTTTCCCAACTGTTTGTTGATGAATTTTCAGTCTGTGATTTGTTTTCCCCCATCGTGCTGGGTTAAGCTTGGCTTTAGTACTCTAACCTATAATTTGGAGCATGGAAATTTTTCTGATGCGTATTGGGTGTTTTTGTACCTGCCTCAGTTTTCAGGCTGAAACTGCGCACCGGACCGGACAGACAATGCTCCATAACTATCTCCAAACTATTGTGGACAGAATTTACTTACAATGAGGAAGGCCTGTGCACAATAGGTGGTTTCAGTTTCAATTAAGTCTTTTAAAAGCTGACTACGAACTGTGAGGGTTTTTGCTGTTCACTGAAATACCAACTTTCTCCTCTTGTCATGATCCCCTTGTTAGACCGCCCCCCACCCAATTCATCTCTCCCATCTCTGTTAAAACTGGGAGTGGAACAGACAGGTCTTTTCAGCAGGGAAGGGCACACAGCAGTGGATTATGCCCTCCCTCCCCCACTGGTCTTTATTCACCACCTGCCCCTGTACCCCTACCCCCTCTCTCATTATCTGCCCCATCCCATGGTGCCTCTGGAGTCTCCTGGAATATCTATCTAATTTTTATCATAGTATGTGCCTTCTAAATGTTATGTTTGCATGTCTCCTATGTTATTGATGTTATGTATAGGGCCAGGGTACCTGTATTTGGCTGTGCTGAGTAGTAACTGTGTAGTTCAGTGTGGGTTTACAAGCCTTTTACACTAAATCAAAAGCCCAGAGTTTGAGGGGGGAGAACAGGGTCAGGGGTTCAGGTTGAGCCATTATTCAGCTTGTATAATATTGGTGATGAATATGTTGTCGAACAGAGGgctaacattttttgtgtgcCGCTGCTGACATCTGAAATAGTTGTCTGAATGCTGCAGCTGACATTTATTACAACACTACATTCTGTGATGGCTCATATTGCATCCATATGTGTCTCAACTTTGCAATGTTGATGAAGTATTATTAGACTTTaaagctttattttattatgtacaATCTTAATGGAATTTTCTGTGTTAAAATATAACTGCTTTGCATGTGTCTTCATTACAGATGCTGTGTCTTACGCAATGCATTATTTTTGTAACTGTGACACTGTGGGGAGACAAAGTGGGATTATCCTGGATTATCTTTAGGATATATGGACTACATCTGTACTAAGTGTAATATTCTGTGtcttgtatatatttgttactATGTAAATGGATGCTGCATTCGcttctttaaataaatattaagtaATTTCGC
>XM_039814965.1
TCCACCAGGATGAAGGAGCCTCCCACATGAAGCTGGGGCCAGGAAATTGTGGTTGCCTAGCAAGTTTTACCTCCACGGTGCAAAGTTTCAAGACGTGTTGCTCGGCTGCTGTCTGTCTTTGCTGTAAACTACAAACTCGCAGCAACtacttttaaatacattttccccGTCGAGGTCCAGGTGGCAACATTGACGGTGCAAGATGTCTGTCGCAGGATTAAGGAAGCAATTTTACAAAGCGAGTCAGCTGGTGAGTGAGAAGGTTGGAGGTGCAGAGGGAACCAAACTGGATGAAGACTTCAAGGACCTCGAGAGgAGAGCAGATGTTACCAGCAAAGCGGTGGTGGAAGTCATCAGTAAAACATCGGAGTACCTCCAGCCCAACCCGGCAACGAGAGCTAAGCTGTCCATGCTCAACACAGTGTCCAAAATGCGTGGGCAGGTCAAGAGTCCGGGCTACCCTCAGCCTGAGGGCCTCCTGGGGGAGTGCATGACTAAGTATGGACGGGATATGGGCGAGGACACCAGTTTTGGTGGGGCTCTAACAGACATTGGGGAGTCAATGAAGAGGATGGCCGAGATCAAAGACTCTCTGGATATTGATGTAAAGCAGAACTTTATTGACCCGCTGCAGGCAGTCGCTGAGAAGGATATCAAAGACATTCAGTACCACCTGAAGAAGCTAGAGGGCCGCCGTCTGGACTATGATTATAAGAAGAAACGTCAAGGTAAAATCCAAGATGACGAGATCAGGCAGGCCCTGGAGAAGTTCCACGAGTCCAAAGAAATGGCTGAAGGCTCCATGTACAACCTGCTGGAAACAGATgTGGAGCAGGTGAGTCAGCTGTCTTCTTTTGTGGAGTCTCTGCTGCAGTACCACAGACAGGCCACACAGGTCCTGGAGGAGCTTTCTGACAAACTGAGAGAAAGGGTGAATGACGCTCAGTCTCGTCCAAGGCGCGAATACACACCCAAACCCAGACCATCCTATGACTATGGAGAGGTAGAAAACTCTAACGGAGGATACTCACCAGCTGCAACAACCCCTCCAGCTTACTCTCCtgCTGAGCCATGCTGTAAAGCACTGTATGACTTTGAGCCAGAGAACGAGGGAGAGCTGGGCTTCCACGAGGGTGACATCATCACCTTGGTCAATCAAATCGATGAGAACTGGTTCGAGGGAGCCATTCGCGGAAAATCGGGATACTTCCCCAACAACTATGTTGAAGTGGTGGTGCCTCTGCCacactaa

Function

symbol description
sh3gl1 Enables identical protein binding activity. Predicted to be involved in central nervous system development and signal transduction. Located in cytosol. Is active in glutamatergic synapse and presynapse. Implicated in acute myeloid leukemia and high grade glioma. Biomarker of high grade glioma.

NR:

description
PREDICTED: endophilin-A2 isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11247 SH3GL; endophilin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814964.1 True 3974 mRNA 0.43 9 27344562 27360321
XM_039814965.1 False 1252 mRNA 0.51 8 27347243 27360319

Neighbor

gene id symbol gene type direction distance location
stap2a LOC103364380,LOC104964213 coding downstream 280 27339111 ~ 27344282 (-)
sema4e LOC103364382 coding downstream 6466 27329082 ~ 27338096 (-)
LOC120567993 LOC104929644,LOC104964218,LOC103364385,LOC106951435 coding downstream 26967 27310305 ~ 27317595 (-)
sirt6 sirt6 coding downstream 36902 27295370 ~ 27307660 (-)
LOC120567764 LOC107384141,LOC100708490,LOC108239462,LOC107096963,LOC101482186,LOC106526414 coding downstream 83216 27252534 ~ 27261346 (-)
LOC120567870 LOC104929640,LOC103364379 coding upstream 3232 27363553 ~ 27381615 (-)
LOC120568100 LOC103364377,LOC100710107,LOC102776083,LOC107384130,LOC103151230 coding upstream 39125 27399446 ~ 27432930 (-)
LOC120568101 NA coding upstream 81825 27442146 ~ 27454453 (-)
LOC120568140 LOC103364374 coding upstream 95095 27455416 ~ 27541967 (-)
fem1a LOC103364373,LOC104929636,LOC107384124,LOC104958134,LOC100699443 coding upstream 186225 27546546 ~ 27548620 (-)
G118401 NA non-coding downstream 49262 27294283 ~ 27295300 (-)
G118339 NA non-coding downstream 144873 27198582 ~ 27199689 (-)
G118337 NA non-coding downstream 146914 27174552 ~ 27197648 (-)
G118482 NA non-coding upstream 218647 27578968 ~ 27609694 (-)
G118483 LOC103364371,LOC101475014,LOC102207447,LOC108239424 non-coding upstream 242080 27602401 ~ 27605241 (-)
G118504 NA non-coding upstream 267565 27627886 ~ 27664712 (-)
G118608 LOC103372824 non-coding upstream 734702 28095023 ~ 28099810 (-)
G118613 NA non-coding upstream 784107 28144428 ~ 28145034 (-)
cirbpa cirbp other downstream 519992 26819838 ~ 26824570 (-)
G118175 NA other downstream 678610 26661621 ~ 26665952 (-)
camk2n1a camk2n2 other downstream 1024967 26315770 ~ 26319595 (-)
G117732 NA other downstream 2421244 24922203 ~ 24923318 (-)
G117560 NA other downstream 2808066 24499380 ~ 24536496 (-)
LOC120568986 epha4,LOC100711706 other upstream 283006 27643327 ~ 27675360 (-)
G118524 NA other upstream 353146 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 785950 28146271 ~ 28152770 (-)
G118764 NA other upstream 1625770 28986091 ~ 28986319 (-)
G118856 NA other upstream 2060058 29420379 ~ 29420652 (-)

Expression


Co-expression Network