opn7a (LOC102784990)


Basic Information

Item Value
gene id opn7a
gene name LOC102784990
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22496072 ~ 22503579 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814974.1
CTTTAATTGGATCAAGCGCTGCATATAAGAGGACGCGGATTTAGGTAATTCAGCACTAATTGGCCGAGATGGAGTCGTTAGATGAAGACATTGCCTTCCACTCCAACATACCTGTGCCACTGGATATAACCGTGGCTGTGGTCTACTCTGTTTTTGGAGTATGTTCACTGTTTGGCAACAGCACCCTGCTGTATGTCTCCTACAAGAAAAAGCACCTCCTGAAACCAGCCGAGTACTTCATCATCAACCTAGCCGTTAGTGACTTgggcctgactctgtccctctaCCCCATGGCCATAACCTCAAGCTTCTACCACAGGTGGCTGTATGGGAAAACAGTGTGCTCCATATACGCTTTTTGTGGCATGTTGTTTGGCCTCTGCAGTCTGACCACTCTAACCTTGCTAAGCATGGTGTGCTTTGTGAAAGTATGTCATCCGCTCTATGGGAACAGGTTTAACTCCCTCCACGGCCGTCTGATCATTGCCTTTGCTTGGGTCTATGCCCTGTTGTTTGCCTGCTCCCCGCTGGCCCACTGGGGGAAATATGGACCAGAGCCTTATGGCACCGCCTGTTGCATTGACTGGCGCCTGTCCAATCAGCACTCTACAGCACGCTCCTACACTTTGGCACTGTTTCTCTTCTGCTACATCATACCATGCTGTATTATTTTAGCATCCTACACGGGAATACTGCTCACAGTGCACGCTTCCCGCAAGACTATGGAGCAGCACGCAATGAGGCAGACACACATAAGCAGCTGCCAGACAATTATTGTTAAGctaaGTGTTGCTGTCTGCATCGGTTTCTTTGCGGCATGGAGTCCATATGCTTTGGTGTCCATGTGGGCTGCCTTTGGACACATTGAGAACATCCCTCCGCTGGCATTTGCCTTGCCCGCCATGTTTGCCAAGTCCTCCACCATCTACAACCCAATCATCTACCTAATGCTGAGGCCGAACGTCCGCAGGGTGGTGCGCAGGGAACTGGCTACTCTATTCCACGCCTGTCTGAAGGGCTGCCTCTGCTCACAGGAGCCAGCTACGTGCTGCTCCAAGCCAGAGATCAGGGTCAGActacgctcaatccacagacaGACCAACCAATTCCCTTCATCCAACTCCTCTGCTCAACCTCCTATGGTAGCATTAAAGGACCACAGCTGTGAGAAGTGCAAGGATGCTTTCAATTGCTTCAGACACTACCCTCGAATGTGCAGCATCACTAACGCTGCTGCCAATGGAGACTCATCTAAGGATCAAGACACTCCAGTTCCCCAAACACATGAGCAGAAGACACAAAGCAAGTGCCACAAGAAGTCTCTGCTGGCCATCATGTGTGCAAAAAGGACTTCAGAAATAGACAACTTCCATATTAATTTAGAGATGGTTCCAGGGCATGCAAAAGTGGCTTGGCCCTAATATTTCACTATATTCACAATGTTTACAGAATACCTCTGCACAGAATTGACAGTTTATGTTCTTTCAGGTGTGGAATTACTTTATTTCTAGAGAGAGGTCTTTAGGTATTATTCATTATGAGTCTAACGCTAAACAACTCAGCTAATCT

Function

NR:

description
opsin-5-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814974.1 True 1569 mRNA 0.48 6 22496072 22503579

Neighbor

gene id symbol gene type direction distance location
dusp22b dusp22,LOC103368952,LOC104931523 coding downstream 11101 22480588 ~ 22484971 (-)
irf4a LOC103368953,LOC104943383 coding downstream 16108 22466809 ~ 22479964 (-)
foxq1a LOC104941088 coding downstream 58338 22436460 ~ 22437734 (-)
LOC120567665 LOC104931526,LOC104941071,LOC103370819 coding downstream 61095 22431645 ~ 22434977 (-)
foxc1a LOC103370816,LOC104931527,LOC104941097,LOC102782320,LOC100700524,LOC102209299 coding downstream 70137 22423693 ~ 22425935 (-)
phlpp1 LOC103368950,LOC101477421,LOC102207086 coding upstream 21682 22525261 ~ 22573807 (-)
LOC120567969 LOC103368948,LOC102290339,LOC102784041,LOC100706175,LOC101476947 coding upstream 72754 22576333 ~ 22622878 (-)
LOC120569075 LOC104929330,LOC103371151 coding upstream 185495 22689074 ~ 22694675 (-)
LOC120568657 tns3 coding upstream 199885 22703464 ~ 22738248 (-)
LOC120568106 dsp,LOC104949487 coding upstream 236055 22739634 ~ 22757614 (-)
LOC120568857 NA non-coding downstream 290081 22181964 ~ 22205991 (-)
G116954 NA non-coding downstream 295092 22195324 ~ 22200980 (-)
G116922 NA non-coding downstream 317538 22178293 ~ 22178534 (-)
G116893 LOC104955993 non-coding downstream 493214 21997794 ~ 22002858 (-)
G116832 NA non-coding downstream 684926 21810862 ~ 21811146 (-)
G117052 NA non-coding upstream 126317 22629896 ~ 22632268 (-)
G117055 LOC104929332,LOC102785373,LOC100706434,LOC102205468,LOC106925933,LOC103142996 non-coding upstream 167154 22670733 ~ 22674450 (-)
G117112 LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425 non-coding upstream 303493 22807072 ~ 22809753 (-)
G117117 NA non-coding upstream 321794 22825373 ~ 22825583 (-)
G117114 NA non-coding upstream 329487 22833066 ~ 22834881 (-)
G116969 NA other downstream 227513 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 1485496 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 1500505 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 2700313 19793342 ~ 19795759 (-)
G116138 NA other downstream 3030692 19464700 ~ 19465380 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 842139 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 926787 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 965041 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 1347494 23851073 ~ 23856621 (-)
G117560 NA other upstream 1995801 24499380 ~ 24536496 (-)

Expression


Co-expression Network