LOC120567917 (tmem200c,LOC104967041)


Basic Information

Item Value
gene id LOC120567917
gene name tmem200c,LOC104967041
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16814692 ~ 16820034 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815013.1
CCCCTGCCGGTCTATTGTGAGTCCGCGTTCAACTGGAAACCACTCTTCCAGACTCGGCACCAAAGTGGCGCAACACGACATGCACAGCTGAACGAGTGTGCGCCTTTGAAGATGTTTGATTGTCACCCATCAATTTCTGGTTGAGTGACAAGCCTGCTGTCCAATCGCCAACATGATAGCCACAGGTGGCCTGCTGCGCATGAACAGGCGCCAGGATTCCCTACGCTCTAAAAACCGAGCGGAAAACAAAAGGAAGCGGAAAtccaagaaaaagaagaagaatgatGTGGTGGTGGTAAAGGGGAAACTCAATCTGTGCTCCCCGGCCGGTTTTGTGGCTGCTGCGGGAGTTATAGTTCTCATGGTGGGGATTTCCATGGCAGTCCTGGGCTACTGGCCCAGCCAGAACCAGCAGCAGTACCAGGAGCGCCGCAGAACTGGAGGATACCACGCCAACAAGATGAGCTACTCCAAAAGTCCACCTGTTTCCTCTAACTTGACCCATAATAAGCCTCCCTCCGGACAGACAAGTTTATTCAACCAGAGCCATTCTAACAGCAGCGCCCCCGATTCCTCCCGCCACTGTGGTTTCCTGTGTGACTTCCTGAATAATTACCTGTACTCAGACAATCTAAAAGTCTTCGGACCACTGGTGATGGGAATCGGCATTTTCCTCTTTATCTGCGCCAATGCAGTCCTCCATGAAAACCGAGACAAGAAAACCAAAATCATCAACCTGAGGGATATCTATTCCACCGTAATAGATCTACACAGCATACGGTCAAAGGAGTACTCGCCTCTAAATGGTTTGGTGAACTACACACAGTCGAGGAGTGCTGAGGGCCCGTCGGGCTCATTCCCTGCAAGTGGGATGCTTACCCGCAGCTCCTGGCCCTCCACTGGACTCAGTTTCCAGAGCGAGTTAGGCGGCGATGATGTGTTCAGACGCCCGTCGTTGGCCAGCAGGCCTCGGAGCTGGTCCCGAGATGTCCAGACCTTCACGGACACTGTCTACAGCATCTACAAAGACTACAGCAATAGCAGCGAGCAGGCCCCGCAGCCGCGACAATGGGAGACCACCTCCATCGTCACCTCTTCTGTGAACGCTTTCACCCTCCCTGTGATCAAACTGAACAACTGTGAGGTGGAGTCTGAGAGAGCGCAGCCAGAAGGACACTCAGAGGAAGGGGTCGTTATTGAGGCTGCTGCTGAAACCATTAGCGAGGAAGGACAAGCCAGCAGCAGCCAGACCGACGAGACGGACACCAAGGAGAGGGACGCCTCAACGGCAAGAACAACGGATCCCCCCCTGCCCCATCAGAGCCACCAGGACATAACCACAGACACAGCTGATCAACAGGGGGTGCCGCAGGCTCAGCCTCAACCACAGTGGACCCAGTTGTTTCCTCCACCTTCACCTGTTGCCAGGGAGATGGGGTCACGGCTGTCGCTCAACTCCCTCACGGATCAGCCCAGGTCTGCACGCCGCTGcagcctgtctgtgtctgtgggtCGTCAAGGCGACAGAGCCAGGCGCTTCAGCTGCCCTCGTCTGGAGCGCTCCAACAGTAAGGGCTACATCAAACTGGCGGACCTGGTGGGCGAGTCCTTCGAAGCCCCCGACACAGACACTTCTTTAGTGGCCACCGATCAGGAAGTAGCATTggacgcagcagcagcagcagcaacagcagcggAGGAAGAAGCTCAGGGAGAGGATAATCTGGTGACAGCCAGCACCTCTGCAGAATCCTAGACTCAATTTTTTGCTGATGAGCCTCTGAAAACTGTTTGATGTTTTGTTCTTTGCTTCGTCCTTCTTCTCTGATTGCTGATGTGAAGCTGGCTATTACAGAGGAAAGACAACGTGGAAAGTAAGCAGCTAAGGACTATTGAAACATAGCCATGAACACTCAAGAGCAAGGCTCTTTATAAATACCACATCCACAGTTCAATATTCAGATgtaatttttctattttttcaaTGTAGCAAGAGCAATACTAAAGACTTGTAAGACGATTTAGTAAAGATTTgtaacaaaagaagaaaatctGATCTGAtgagttttaactttttttttgtataacagTAGGGAAACCATTGTAGCTTATAGAATTGCCAAAACTGTCACTGAGAACTACTGTCTGACACGTTGTACTGTAGCATTAAAATATGCCACAGAAATCTAAATAGTCTAGTATTGTTTCTCTACATTGTGATGTGAATACCACGTGAATAGGTGAACTGAATTGAATCTCAGGTAGACGTTTGGTTTAGGATCGAGACCTTGAGGACAAGGTCTTCCCTATGTGCACACTTGTTTATATGAAACATTCATGGTTGAATAAACTTGACTGTAACACCTCCTGTCGGATCTAATAGGTGTCCTTGTGTGATATTAGATTAAATGCAGCCAATGCAAAACGGTTTGTTTGCTCCAAATATTTTAAGAAACATTAAATGAAAGCGATGAAAA

Function

symbol description
tmem200c Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 200C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815013.1 True 2477 mRNA 0.49 2 16814692 16820034

Neighbor

gene id symbol gene type direction distance location
LOC120568957 LOC103353943 coding downstream 59926 16751993 ~ 16754766 (-)
LOC120568912 apcdd1,LOC102777074 coding downstream 102428 16685480 ~ 16712264 (-)
acss2l LOC100697261 coding downstream 252529 16541130 ~ 16562163 (-)
napgb napg,LOC102781071 coding downstream 378451 16430142 ~ 16436241 (-)
LOC120568161 LOC104950912 coding downstream 571995 16227938 ~ 16242697 (-)
LOC120568369 ptprm,LOC102799796 coding upstream 27776 16847810 ~ 17015626 (-)
LOC120567671 lrrc30,LOC104932041,LOC103353948 coding upstream 200701 17020735 ~ 17022393 (-)
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding upstream 345857 17165891 ~ 17176411 (-)
LOC120568842 LOC103353955,LOC104931259 coding upstream 363128 17183162 ~ 17275789 (-)
LOC120567855 NA coding upstream 477021 17297055 ~ 17298924 (-)
G115331 NA non-coding downstream 63417 16750900 ~ 16751275 (-)
G115323 NA non-coding downstream 199767 16613028 ~ 16614925 (-)
G115309 NA non-coding downstream 254219 16543613 ~ 16560473 (-)
G115278 mtcl1 non-coding downstream 301797 16508577 ~ 16512895 (-)
G115240 NA non-coding downstream 497720 16316651 ~ 16316972 (-)
LOC120569046 NA non-coding upstream 3268 16823302 ~ 16824660 (-)
G115391 NA non-coding upstream 216832 17036866 ~ 17039107 (-)
G115428 LOC103353952,LOC107089435 non-coding upstream 292682 17112716 ~ 17114744 (-)
G115429 NA non-coding upstream 299887 17119921 ~ 17121046 (-)
G115430 LOC102789304,LOC101466350,LOC102216210,LOC102305671,LOC100690840 non-coding upstream 302688 17122722 ~ 17123058 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 2774 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 174880 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 478736 16330952 ~ 16335956 (-)
mppe1 mppe1,LOC102781954 other downstream 487266 16317418 ~ 16327426 (-)
cc2d1b cc2d1b other downstream 612994 16182654 ~ 16201698 (-)
ly97.3 NA other upstream 219766 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other upstream 223092 17043126 ~ 17045062 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 1232950 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 1660636 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 1883030 18703064 ~ 18720587 (-)

Expression


Co-expression Network