LOC120567950 (LOC103354333,LOC102291624,LOC100702032,LOC107083612,LOC107384444)


Basic Information

Item Value
gene id LOC120567950
gene name LOC103354333,LOC102291624,LOC100702032,LOC107083612,LOC107384444
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13774982 ~ 13822764 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815059.1
tttcgaACACCCCCCTTCCCCTGAAGTGTTGCTATCCCcaacaaaaacactttttattGTCCAACATTTCTGTTTGGCTCTACTTTTTCCACTTGGCATTTCTTACAGCAACAAGTGTTGCTGGCTACCAGCGACAGCTTATCCGTTTttccaaacagaaaaaaaaaaaaaataaaatgccaacGACATATTAGCTGCCTTTCAGTGCACAGTGTGTGCCACAGCCGTGACACCGGGCTGCGATGATCGTGTCCAACGTGAGCCTGAGCGGCTGCGCAGGGGTCAACAGCGCTCTGTGTGCCGCAGCCGGGGAAGGGCACTTCGGGGGAGGCTCACACCGGACCACCCTCACACCGACAGGAAACCTGATCGTGGCTGTGTGCCTGGGCTTCATCGGCACTTTCGGATTTATGAACAACCTGTTAGTGCTGGTGCTCTACTGCCGCTACAAGATGCTGCGGTCGCCCATCAACCTGCTCCTGATTAACATTGCCATCAGCGACCTGCTGGTGTGCGTACTGGGGACTCCGTTCAGCTTCGCCGCCAGCATGCAGGGAAGGTGGCTCATAGGAGAGGGCGGCTGCGTATGGTACGGCTTCGCCAACTCCCTCTTTGGCATCGTCTCCCTGATCTCCCTGGCTGTCCTCTCCTATGAGCGCTACAGCACCATGGTGGCGCCCACTGAGGCGGACTCCTCCAACTACCGTAAGATCTCCCTGGGCATCACCCTGTCCTGGGTCTACTCCCTCATCTGGACCATGCCGCCACTTTTTGGCTGGAGCCACTATGGTCCCGAGGGTCCTGGGACCACCTGCTCGGTCAACTGGACGGCCAAGACGGTGAACAACATATCTTACATCATCTGCCTGTTTGTCTTCTGCCTCATTGTGCCGTTTCTGGTGATCGTGTTTTGCTATGGGAAGCTGCTGTGCGCCATCAGACAGGTGCGCGGGATCAATGCATCGTTGAGCAGGAAACGTGAGCAGCGCGTGTTATTCATGGTGGCAGTCATGGTGATCTTCTACCTATTGTGCTGGCTGCCGTACGGCATCATGGCCCTGATGGCCACCTTTGGGTCGCCGGGCCTGGTCACACCCGTGGCAAGCATCATCCCCTCACTCCTGGCCAAGACGAGCACGGTCATCAACCCAGTCATCTATGTCTTCATGAATAaacagTTTTACAGATGTTTCCATGCCCTGCTGCATTGTGAGGCTCCTCGACGAGGCTCGAGCACAAAGAGCTCCTCCAAGGTCGCCACCAAGGTCATGAGGGCTGTAGCAATCACTGGTACCCGCCGCACCAACAACTTCCTATTATTGGTAGCCTCCCTGGGTCAACCGGCCGCCACCATGCCCCAACCGAACCCCTCAGTGGAAGCAACCATTGATAACACCAAAGGCCCCTCTTCAGACATCAACAAACCTGTCGTAGTATCACTAGTGGCTGATGATTGGCTATAACCATAAAATCCCATAAAGTACCCAGCCAAGAAGTCATTAATAATGAGAGAGGTGGTGTTACTGAGGCTTGGAGAGCAGCAGCCAGCCAATCCAGGTGGAGTTAACGCTGCTGTTGCATCAGCTTTACCCCAGCTAGTAGACATGATGGACTGCTAAGAAAGGCACATCTTGGACTGCTTCTCGACAATTTACTCTCAGAAGCTGGGAGTCTGCGTTTCTCTGTAGATGACTATGATGATGTTTTTCAGACCATTATGTTAATAGAAGAGGAATTGAGGGGATCATTCATTTTGTGCAATACATAATGTTTACTTAGGCATAACAGAAATGTGTTCAGAGTGCAAGAATGTTGCATTGATTGGTTTCAGACTGTAGTTACAGAGTGAAGTTCAAGAACACAAGTTGTTTATTACCCCAATCATTTTGAAGTATTTTCTAGAGTAGACAAGATTAAAAAGATAAGAGACTATTGAGTAATATTGGTTATGATTTTAAAGTGTCTTCttggctttttttctctgtcagtAATTTTTATTTAACTGATCACTCATCACTTTAAAATGCATCAGTAGTTTTCAATTAAGTTGTTTAATAAGTCTTTTGATGGAAGTAGCATTGCTAGCAGCACAAAGGTTTTGTCAGAAATAGTGACTTAGGAATAATGATATAGGTGCATGTTGGAGAGTTACTGTATAGTTCCTTCAATAGCGATGTGCATGTGCACTTTTGAAGTATGACATGCAAATGAGGTTGAGAATTACAGTATCTGGTAATATTCAGTAGATAGCACTTATAGAGAATATTGGTATCGGCAGAAATCCTGAAAATGTATGCCTTTCTGGACTGATTTTTTTCAGACATTTCCACGTGTAAACAATTTGTATATTAACAGATTTCACAGCtgtaaaatcagtttttttttaaaaaaaaggtgcagTTAGCAATGCTGtgcaaagattgttgatatttgaattcAACTGCCAAATAAATACTACTGGCTGACAACTACTTCACATGCTGCCTCCccactcccccccccaccatcaACTGAAGCCGCCTGTTGCGGATAGGCTGGAAAAGTGTTTTGTGGCTTGTGCACTCCTTTGTGttcgttatat
>XM_039815060.1
tttcgaACACCCCCCTTCCCCTGAAGTGTTGCTATCCCcaacaaaaacactttttattGTCCAACATTTCTGTTTGGCTCTACTTTTTCCACTTGGCATTTCTTACAGCAACAAGTGTTGCTGGCTACCAGCGACAGCTTATCCGTTTttccaaacagaaaaaaaaaaaaaataaaatgccaacGACATATTAGCTGCCTTTCAGTGCACAGTGTGTGCCACAGCCGTGACACCGGGCTGCGATGATCGTGTCCAACGTGAGCCTGAGCGGCTGCGCAGGGGTCAACAGCGCTCTGTGTGCCGCAGCCGGGGAAGGGCACTTCGGGGGAGGCTCACACCGGACCACCCTCACACCGACAGGAAACCTGATCGTGGCTGTGTGCCTGGGCTTCATCGGCACTTTCGGATTTATGAACAACCTGTTAGTGCTGGTGCTCTACTGCCGCTACAAGATGCTGCGGTCGCCCATCAACCTGCTCCTGATTAACATTGCCATCAGCGACCTGCTGGTGTGCGTACTGGGGACTCCGTTCAGCTTCGCCGCCAGCATGCAGGGAAGGTGGCTCATAGGAGAGGGCGGCTGCGTATGGTACGGCTTCGCCAACTCCCTCTTTGGCATCGTCTCCCTGATCTCCCTGGCTGTCCTCTCCTATGAGCGCTACAGCACCATGGTGGCGCCCACTGAGGCGGACTCCTCCAACTACCGTAAGATCTCCCTGGGCATCACCCTGTCCTGGGTCTACTCCCTCATCTGGACCATGCCGCCACTTTTTGGCTGGAGCCACTATGGTCCCGAGGGTCCTGGGACCACCTGCTCGGTCAACTGGACGGCCAAGACGGTGCGCGGGATCAATGCATCGTTGAGCAGGAAACGTGAGCAGCGCGTGTTATTCATGGTGGCAGTCATGGTGATCTTCTACCTATTGTGCTGGCTGCCGTACGGCATCATGGCCCTGATGGCCACCTTTGGGTCGCCGGGCCTGGTCACACCCGTGGCAAGCATCATCCCCTCACTCCTGGCCAAGACGAGCACGGTCATCAACCCAGTCATCTATGTCTTCATGAATAaacagTTTTACAGATGTTTCCATGCCCTGCTGCATTGTGAGGCTCCTCGACGAGGCTCGAGCACAAAGAGCTCCTCCAAGGTCGCCACCAAGGTCATGAGGGCTGTAGCAATCACTGGTACCCGCCGCACCAACAACTTCCTATTATTGGTAGCCTCCCTGGGTCAACCGGCCGCCACCATGCCCCAACCGAACCCCTCAGTGGAAGCAACCATTGATAACACCAAAGGCCCCTCTTCAGACATCAACAAACCTGTCGTAGTATCACTAGTGGCTGATGATTGGCTATAACCATAAAATCCCATAAAGTACCCAGCCAAGAAGTCATTAATAATGAGAGAGGTGGTGTTACTGAGGCTTGGAGAGCAGCAGCCAGCCAATCCAGGTGGAGTTAACGCTGCTGTTGCATCAGCTTTACCCCAGCTAGTAGACATGATGGACTGCTAAGAAAGGCACATCTTGGACTGCTTCTCGACAATTTACTCTCAGAAGCTGGGAGTCTGCGTTTCTCTGTAGATGACTATGATGATGTTTTTCAGACCATTATGTTAATAGAAGAGGAATTGAGGGGATCATTCATTTTGTGCAATACATAATGTTTACTTAGGCATAACAGAAATGTGTTCAGAGTGCAAGAATGTTGCATTGATTGGTTTCAGACTGTAGTTACAGAGTGAAGTTCAAGAACACAAGTTGTTTATTACCCCAATCATTTTGAAGTATTTTCTAGAGTAGACAAGATTAAAAAGATAAGAGACTATTGAGTAATATTGGTTATGATTTTAAAGTGTCTTCttggctttttttctctgtcagtAATTTTTATTTAACTGATCACTCATCACTTTAAAATGCATCAGTAGTTTTCAATTAAGTTGTTTAATAAGTCTTTTGATGGAAGTAGCATTGCTAGCAGCACAAAGGTTTTGTCAGAAATAGTGACTTAGGAATAATGATATAGGTGCATGTTGGAGAGTTACTGTATAGTTCCTTCAATAGCGATGTGCATGTGCACTTTTGAAGTATGACATGCAAATGAGGTTGAGAATTACAGTATCTGGTAATATTCAGTAGATAGCACTTATAGAGAATATTGGTATCGGCAGAAATCCTGAAAATGTATGCCTTTCTGGACTGATTTTTTTCAGACATTTCCACGTGTAAACAATTTGTATATTAACAGATTTCACAGCtgtaaaatcagtttttttttaaaaaaaaggtgcagTTAGCAATGCTGtgcaaagattgttgatatttgaattcAACTGCCAAATAAATACTACTGGCTGACAACTACTTCACATGCTGCCTCCccactcccccccccaccatcaACTGAAGCCGCCTGTTGCGGATAGGCTGGAAAAGTGTTTTGTGGCTTGTGCACTCCTTTGTGttcgttatat

Function

NR:

description
PREDICTED: vertebrate ancient opsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815059.1 True 2581 mRNA 0.47 4 13774982 13822764
XM_039815060.1 False 2476 mRNA 0.47 4 13774982 13822764

Neighbor

gene id symbol gene type direction distance location
LOC120567848 LOC102214260,LOC102313714,LOC100696384 coding downstream 87174 13661538 ~ 13687808 (-)
LOC120567847 LOC102799957,LOC102205731,LOC101468926,LOC102313119 coding downstream 115525 13651268 ~ 13659457 (-)
LOC120567845 ptchd3 coding downstream 129788 13643360 ~ 13645194 (-)
LOC120567843 ptchd3,LOC103354362 coding downstream 130440 13640522 ~ 13644542 (-)
LOC120568814 LOC106928308,LOC103129201,LOC107086848,LOC103354342,LOC101170217,LOC106961870 coding downstream 155284 13595178 ~ 13619698 (-)
tnk2b tnk2 coding upstream 65535 13888299 ~ 13915355 (-)
c11h7orf26 LOC103366860,LOC102212268,LOC102304778,LOC102798014,LOC100695326 coding upstream 155486 13978250 ~ 13984589 (-)
pgap6 tmem8a coding upstream 173627 13996391 ~ 14006208 (-)
LOC120568034 NA coding upstream 184978 14007742 ~ 14011242 (-)
LOC120568033 LOC103366454,LOC104932767,LOC101066162,LOC108238297 coding upstream 200264 14023028 ~ 14038301 (-)
G114257 NA non-coding downstream 146315 13625776 ~ 13628667 (-)
G114256 LOC102077222,LOC102776852 non-coding downstream 149503 13622903 ~ 13625479 (-)
G114247 anxa13,LOC105930306,LOC100703370 non-coding downstream 210179 13556604 ~ 13564803 (-)
LOC120568710 NA non-coding downstream 225516 13533138 ~ 13549466 (-)
G114215 LOC103354350,LOC100704451,LOC101473770,LOC106904511,LOC103151571,LOC106963118 non-coding downstream 368152 13394461 ~ 13406830 (-)
LOC120567953 NA non-coding upstream 119291 13942055 ~ 13948115 (-)
G114456 c8a non-coding upstream 226730 14049494 ~ 14055523 (-)
LOC120568036 NA non-coding upstream 301939 14124703 ~ 14171474 (-)
G114518 NA non-coding upstream 496579 14319343 ~ 14320763 (-)
G114530 NA non-coding upstream 596087 14418851 ~ 14466248 (-)
dis3l2 dis3l2 other downstream 292757 13469531 ~ 13482225 (-)
G114152 NA other downstream 686419 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 799654 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 1006357 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 1166413 12601180 ~ 12608569 (-)
tfr1a NA other upstream 127107 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 790849 14613613 ~ 14618224 (-)
G114680 NA other upstream 973154 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 1467318 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 2321396 16144160 ~ 16148121 (-)

Expression


Co-expression Network