XLOC_004732 (mta3)


Basic Information

Item Value
gene id XLOC_004732
gene name mta3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25223799 ~ 25284510 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009372
GCAGTCTGTAGACTTCATTCACCCTCCTTCTTCCTTCCCTCCTCTTTTCTCTCCTCCTCTCATCTCATCATCAGGAAGCTGCTGCGCTCGAGCCTTTTCTAGCGCGTGAaTTATGTCTTCTTTGAGAATTCTTCAAGCAACCCCTATCTGATCAGGCGAATAGAGGAACTGAATAAGACTGCAAGCGGAAATGTGGAGGCAAAGGTGGTTTGTTTCTACAGGAGACGGGACATCTCTCAGAGCCTCATCCAGCTGGCAGACAAACACGCAAAGGACCTGGAAGAAGAGAAGGAAAGCCCCCCAGAGTCCGACCTCACTGAAAAACAGAAACATCAGCTCCGCCACAGAGAGCTTTTCCTCTCCCGCCAGTACGAATCCCTCCCTGCCACGCACATCAGGGGGAAGTGCAGCGTGGCCCTCCTTAACGAGACAGAAGTTGTGCTCTCCTACCTAGAGAAAgagGACACATTTTTTTACTCATTGGTGTACGACCCAACACAGAAGACGCTATTGGCGGACAAGGGGGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCTGAAATGCTACAGGAAGGAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCG
>TCONS_00009373
TTTTCTCTCCTCCTCTCATCTCATCATCAGGAAGCTGCTGCGCTCGAGCCTTTTCTAGCGCtttatggtTTGGTTTTTTAACACTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAGaTTATGTCTTCTTTGAGAATTCTTCAAGCAACCCCTATCTGATCAGGCGAATAGAGGAACTGAATAAGACTGCAAGCGGAAATGTGGAGGCAAAGGTGGTTTGTTTCTACAGGAGACGGGACATCTCTCAGAGCCTCATCCAGCTGGCAGACAAACACGCAAAGGACCTGGAAGAAGAGAAGGAAAGCCCCCCAGAGTCCGACCTCACTGAAAAACAGAAACATCAGCTCCGCCACAGAGAGCTTTTCCTCTCCCGCCAGTACGAATCCCTCCCTGCCACGCACATCAGGGGGAAGTGCAGCGTGGCCCTCCTTAACGAGACAGAAGTTGTGCTCTCCTACCTAGAGAAAgagGACACATTTTTTTACTCATTGGTGTACGACCCAACACAGAAGACGCTATTGGCGGACAAGGGGGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCTGAAATGCTACAGGAAGGAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCGAGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTGTTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTTCTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAGAAACGACTGAAGGCAGCTGAAGCAGAGAGCAAACTGAAGCAAGTCTACATCCCTACATAcaataaacCCAACCCAAACCAGATCTCTGTCAGCAATGGCAAGATGGCAACAGTGAACGGTGCAGCAGCAGGCACAGGCAGTTTCCACACAGCTGGAGGGGGCCGCGCATGCGAGAGCTGTTTTGCTGTACAGTCTGCTCAGTGGTACTCCTGGGGTCCTCCTAATATGCAGTGTCGCCTGTGTGTTTCCTGTTGGATGTACTGGAAGAAGTACGGTGGCTTGAAGATGCCAAGCAGAGCTGAGGGGGCAGAGGAAAAAACACCTCCAAGCCCTGCACCTAACGAATCACGTTCTCGTGGCCACTGTGCCCGTCAGTCTTCCCACATGGTCCCCATCCGGAACAGTGGTAGCCCAAAATCCTCCATGAAGACCAAGCAGGCGTTCCTCCTGCAGGCAACGCGCCTCACCAAGCTGGCGCGTCACATGTGCCGCGATCTCATCAGGCTGCGCCGGGCCGCGCGCCGCCCCTTTGTGCCCATTAACTGTGGTGCCATAAAGGCGGAGTGTAAGAGCTCTTTAAATTCCTAACTTCAGCGTcgcgtacaaacacacacacatcccacATTGTCCCACCCGCTCTGTTCCCCGACCACACCTGTCCACATCTCGCTGTCATCCCCCCCCTCCCTCCATCTTCCTGTcttgtactgtttttattattataattattgctattatattttattttgttttttgtattctcCCCACCCCATTTCCAATAAAGACTGCCTGTCCTCCA
>TCONS_00009374
GAAGCTGCTGCGCTCGAGCCTTTTCTAGCGCGTGAGTGAGTTACTGTATTGTACTGTGAATCTCGGGAGGGGGGCTGCAAAAAAATCTCCTATTCTTACTGAGGTCCACCCCCCTTATTTAAAACTTCTTAAGCCAGATTGCTTTCCAACAGGTCACAGGACGTAGATGCCTTCTTGattcacatatttattttgtttttattttagtttatggtTTGGTTTTTTAACACTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAGaTTATGTCTTCTTTGAGAATTCTTCAAGCAACCCCTATCTGATCAGGCGAATAGAGGAACTGAATAAGACTGCAAGCGGAAATGTGGAGGCAAAGGTGGTTTGTTTCTACAGGAGACGGGACATCTCTCAGAGCCTCATCCAGCTGGCAGACAAACACGCAAAGGACCTGGAAGAAGAGAAGGAAAGCCCCCCAGAGTCCGACCTCACTGAAAAACAGAAACATCAGCTCCGCCACAGAGAGCTTTTCCTCTCCCGCCAGTACGAATCCCTCCCTGCCACGCACATCAGGGGGAAGTGCAGCGTGGCCCTCCTTAACGAGACAGAAGTTGTGCTCTCCTACCTAGAGAAAgagGACACATTTTTTTACTCATTGGTGTACGACCCAACACAGAAGACGCTATTGGCGGACAAGGGGGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCTGAAATGCTACAGGAAGGAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCGAGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTGTTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTTCTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAGAAACGACTGAAGGCAGCTGAAGCAGAGAGCAAACTGAAGCAAGTCTACATCCCTACATAcaataaacCCAACCCAAACCAGATCTCTGTCAGCAATGGCAAGATGGCAACAGTGAACGGTGCAGCAGCAGGCACAGGCAGTTTCCACACAGCTGGAGGGGGCCGCGCATGCGAGAGCTGTTTTGCTGTACAGTCTGCTCAGTGGTACTCCTGGGGTCCTCCTAATATGCAGTGTCGCCTGTGTGTTTCCTGTTGGATGTACTGGAAGAAGTACGGTGGCTTGAAGATGCCAAGCAGAGCTGAGGGGGCAGAGGAAAAAACACCTCCAAGCCCTGCACCTAACGAATCACGTTCTCGTGGCCACTGTGCCCGTCAGTCTTCCCACATGGTCCCCATCCGGAACAGTGGTAGCCCAAAATCCTCCATGAAGACCAAGCAGGCGTTCCTCCTGCAGGCAACGCGCCTCACCAAGCTGGCGCGTCACATGTGCCGCGATCTCATCAGGCTGCGCCGGGCCGCGCGCCGCCCCTTTGTGCCCATTAACTGTGGTGCCATAAAGGCGGAGTGTAAGAGCTCTTTAAATTCCTAACTTCAGCGTcgcgtacaaacacacacacatcccacATTGTCCCACCCGCTCTGTTCCCCGACCACACCTGTCCACATCTCGCTGTCATCCCCCCCCTCCCTCCATCTTCCTGTcttgtactgtttttattattataattattgctattatattttattttgttttttgtattctcCCCACCCCATTTCCAATAAAGACTGCCTGTCCTCCATA
>TCONS_00009375
GAAGCTGCTGCGCTCGAGCCTTTTCTAGCGCGTGAGTGAGTTACTGTATTGTACTGTGAATCTCGGGAGGGGGGCTGCAAAAAAATCTCCTATTCTTACTGAGGTCCACCCCCCTTATTTAAAACTTCTTAAGCCAGATTGCTTTCCAACAGGTCACAGGACGTAGATGCCTTCTTGattcacatatttattttgtttttattttagtttatggtTTGGTTTTTTAACACTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAGaTTATGTCTTCTTTGAGAATTCTTCAAGCAACCCCTATCTGATCAGGCGAATAGAGGAACTGAATAAGACTGCAAGCGGAAATGTGGAGGCAAAGGTGGTTTGTTTCTACAGGAGACGGGACATCTCTCAGAGCCTCATCCAGCTGGCAGACAAACACGCAAAGGACCTGGAAGAAGAGAAGGAAAGCCCCCCAGAGTCCGACCTCACTGAAAAACAGAAACATCAGCTCCGCCACAGAGAGCTTTTCCTCTCCCGCCAGTACGAATCCCTCCCTGCCACGCACATCAGGGGGAAGTGCAGCGTGGCCCTCCTTAACGAGACAGAAGTTGTGCTCTCCTACCTAGAGAAAgagGACACATTTTTTTACTCATTGGTGTACGACCCAACACAGAAGACGCTATTGGCGGACAAGGGGGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCTGAAATGCTACAGGAAGGAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCGAGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTGTTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTTCTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAGAAACGACTGAAGGCAGCTGAAGCAGAGAGCAAACTGAAGCAAGTCTACATCCCTACATAcaataaacCCAACCCAAACCAGATCTCTGTCAGCAATGGCAAGATGGCAACAGTGAACGGTGCAGCAGCAGGCACAGGCAGTTTCCACACAGCTGGAGGGGGCCGCGCATGCGAGAGCTGTTTTGCTGTACAGTCTGCTCAGTGGTACTCCTGGGGTCCTCCTAATATGCAGTGTCGCCTGTGTGTTTCCTGTTGGATGTACTGGAAGAAGTACGGTGGCTTGAAGATGCCAAGCAGAGCTGAGGGGGCAGAGGAAAAAACACCTCCAAGCCCTGCACCTAACGAATCACGTTCTCGTGGCCACTGTGCCCGTCAGTCTTCCCACATGGTCCCCATCCGGAACAGTGGTAGCCCAAAATCCTCCATGAAGACCAAGCAGGCGTTCCTCCTGCAGGCAACGCGCCTCACCAAGCTGGCGCGTCACATGTGCCGCGATCTCATCAGGCTGCGCCGGGCCGCGCGCCGCCCCTTTGTGCCCATTAACTGTGGTGCCATAAAGGCGGAGTATATGATCCGGGTGTCCGAGGGCATGACAGGGAGACCTTTGAAGCCCAAATCTTCTCCCAGGAGCACCCTGACCAGCGTCTTGCAGTATCTTGAGTCCCGTCCAGCAACTCATGTTCAACGGCCTCATCGCACCCCTGGCCTACAGGTGCAGCCTCCACGACGCCTGCTTTCCTCTCTTCCAAGTCATGGCCCGCTTGGAATGTTGGGAAAACGAAGCTACCATCACCACAGCAGGGTTGAATCTGCAGAAAGGAGGGCTGGTGCTACAGGACAAGAAAATCCAGCTCATATTGTGGGGCCCATTCTGCAGCATAATGGGAGCAGCACCGGTGGCTCCAGCCTTCGTGGCAGTGGCTTGATGCTCCGTAAGAGACGACCCAACTGGATCGATGCTCCTGATGACAGCTTCTTCCTGGTTTCCCGAGAGACGAGAAAAGCCAGGAGGATGCTGTCCCGTTCACAGTTGAGAAGAGCATGTAGACAACCATGTGAGCAGATCAGTCTGCGCAGGGTCCCCCAGGGGCCCTCACAGGTACCCATCCTGGCACCTCCTCACCCCAGTTTACGGATGCGCGGCCCAATCGTCATCCATGACTGA

Function

symbol description
mta3 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Is expressed in blastodisc; central nervous system; and intermediate cell mass of mesoderm. Orthologous to human MTA3 (metastasis associated 1 family member 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0016575 histone deacetylation biological_process
GO:0016581 NuRD complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6485 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Is expressed in blastodisc; central nervous system; and intermediate cell mass of mesoderm. Orthologous to human MTA3 (metastasis associated 1 family member 3).

Ensembl:

ensembl_id ENSDARG00000054903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009372 False 683 processed_transcript 0.51 7 25223799 25251787
TCONS_00009373 False 1864 mRNA 0.52 15 25223843 25267129
TCONS_00009374 False 2012 mRNA 0.51 14 25223873 25267131
TCONS_00009375 True 2375 mRNA 0.53 19 25223873 25284510

Neighbor

gene id symbol gene type direction distance location
XLOC_004731 CR848736.1 coding upstream 9072 25201543 ~ 25214727 (+)
XLOC_004730 pigf coding upstream 112825 25097754 ~ 25110974 (+)
XLOC_004729 gch2 coding upstream 131229 25085751 ~ 25092570 (+)
XLOC_004728 CR385067.1 coding upstream 148679 25073305 ~ 25075120 (+)
XLOC_004727 calm3a coding upstream 265007 24952902 ~ 24958792 (+)
XLOC_004733 CR932077.1 coding downstream 27508 25312018 ~ 25430371 (+)
XLOC_004734 ppm1bb coding downstream 148116 25432626 ~ 25487244 (+)
XLOC_004735 NA coding downstream 217896 25502406 ~ 25504380 (+)
XLOC_004736 six3b coding downstream 316175 25600685 ~ 25603341 (+)
XLOC_004737 prkcea coding downstream 355970 25640480 ~ 25770232 (+)
XLOC_004726 NA non-coding upstream 279295 24944172 ~ 24944504 (+)
XLOC_004724 BX255907.1 non-coding upstream 658207 24565478 ~ 24565592 (+)
XLOC_004723 BX255907.2 non-coding upstream 805459 24418224 ~ 24418340 (+)
XLOC_004738 CR932018.1 non-coding downstream 363617 25648127 ~ 25648243 (+)
XLOC_004744 NA non-coding downstream 1204843 26489353 ~ 26491973 (+)
XLOC_004748 NA non-coding downstream 1305134 26589644 ~ 26593298 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_05281800_05302429 NA coding CI01000063 null 5280655 ~ 5302499 (+)
bowfin (Amia calva) AMCG00001866 LOC107582777,LOC108273982,LOC107698822 coding CM030143.1 CM030143.1 17885198 ~ 17931279 (+)