LOC120567993 (LOC104929644,LOC104964218,LOC103364385,LOC106951435)



Basic Information


Item Value
gene id LOC120567993
gene name LOC104929644,LOC104964218,LOC103364385,LOC106951435
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27310305 ~ 27317595 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039815154.1
tatagtcgTGTATTTTTATACGCCATTGTGTGGCTTCTTGCTCGCTTTTTTACGGTTAAAAGTCATGTTTATAGAAGCGTGGACTACAAATCCCAGACAACACAAGGCGCCGTTGCCTGTGTTGAGGGGAGACGAGACTCCTTTCAGCAACATTCTTCTTTAGCCAGTCCTTCTGTTAGGGTGATATCAGCTACAATTCTGACTTTTGTCGTTAGAGGTTTTGTTTGCTAGCATTTCAGATCAATAGTTGcgttttattttctaatttgACTCTCATAGGGAGTTAGAAAGTATTCACGCCACGGTAAACTCGTCTTCAGCTGGTCCGTCAGGTAGAGCTTGTTAGCTAGTTtacattagccagcagctaccAGTAGATTTAGCTGCGGCTTATATCCGTGGCTGCCCTGCCAGGTAACGTTAGATCATCTAAAGCTGGATGCGCTGGTCCGCCACAATGGTTTGGTCAGTTCAACAATTTCAGAGTATTGACATTAGTAAATAATTTATCTGATTTACAGACAAATCAACGCAACCTTTGTTTGACTTGTGCGCAGCCCGTCAGGTTTGGCCTGTTTCATTGTCTTCGAACATCGACAACAGACAAGTTGTTAGTTAGTGTCAGTAGGTTGTTTCGGCTAGTTAGGCTAACTTAGCCGTGTTCGCGTAAACAAACCCGTCAGCTGTCGACTCTAGATAACATTGGAAGCTACCCAGTTCAGTATGGCGCAACACGACCACTCTCATGTAGCCAGTTCACAGAAAGCACTCATGTTGGAGATGAAGAGCCTTCAGGAGGAGCCTGTCGAGGGATTCAAAATAACACTGGTGGACGAGGCTGATATGTACAACTGGGAAGTGGCCATTTTCGGACCCCCAAACACTCATTATGAAGGAGGGTATTTTAAGGCTCGGATCAAGTTCCCTATTGACTACCCATACTCCCCACCTGCCTTCCGGTTCCTCACCAAGATGTGGCACCCCAACATCTATGAGAATggagatgtgtgtatttctaTATTGCACCCTCCAGTGGACGACCCGCAAAGTGGAGAGCTGCCTTCAGAGAGGTGGAATCCCACCCAGAATGTCCGGACCATTTTGCTGAGTGTGATCTCGCTGCTGAATGAACCCAACACCTTCTCCCCCGCCAATGTGGACGCCTCCGTCATGTACCGCAAATGGAGGGACAGCAAGGGCAAGGACCGGGAATACGTCGAGATCATCAAGAAACAGGTATTGGCCACCAAGGCGGAAGCCGAGCGCGACGGCGTGAAGGTGCCCACCACGCTGGCCGAGTACTGCGTCCGCACGCGCGCCCCGGCCCCCGACGAAGGCTCCGACCTCTTCTACGACTATTACTATGACGACGACGACGTGGAGGGCGAGGACGGCGACTGCTGCTACGATGAAGACGACTCGGGCAACGAGGAGTCgtgacatgctttttttttttttttgaccgcATCCCCAATCTAGCTGACAAACGCTAGCCGTTGTTCAGTCTGGGTCGCCAGAAATTCTTGGTTTGGAAGCTTTCCCACTTCTAAACCAATTGAAAagagctgtttttttgtttttcttttcctgagCCTCTGAATGATTTTCAGAGGCCAAAATCGACGCACTGTTGTGTAAGGGTCAGACCTGGTAAAAATTTGCACCAGCACAAAAGTCACCAGTTTCATCAGTGCAGACGTTATTATTTCATTATCACCTAAAACCTTACTTTGAGAGAATATTACTTAATTCCTTTTGAGTTGGTCAGTCCCCTGTATGATAATAGTATTGCGGGGTTAGTGCCACTTTTACCAATAGCAACATTTGCACTGGTGCAAACCCTTCCAAACTTTGCTCAGCCTCTCTCTTGCATATCTTTATTTCCCTAATTGTAACTCGGTGTGGCTCACCAGTAGTCGGTCTCGGTGACTGACAGAAGATCGAGGACTTCAAGCGGCCTGTTTTTGTACTGAACAATCGACCGCCAATCCATTAAATCAGACATTTCCAAGTTTTCGCAATCGGTCTCGCTTCGATATGACGGGATGTCGCAGGACGTCGCAAAGTTCTTGTGCATGCCAGAACGTCGttggaagctttttttttttttttttggtccctTTTTACTGATGGGCTGTTTACCTTCATCATGATCTGTTTTTAGCTCGCTGAGAAGAAAGACTTCTGTTGACTGAGATCCCAGAGAACTTTTCTATCTGGAGGGACCGACTGGCAAGCTGAGTCAGCGGGTCAAATCCTCACGTGAACCGTTTTGGTAACCAGAAATTGATATTTTGCCGTGTTTCCTCTGGTTACTGTTGGATGTGTTTTCTCTTGTCGTTTTGAGTGTGGGGTTATGTTATTTGAAGTAGCTCAGATATAAGAGTGTGTAGAGGTGTGTTTTTCCGAGTTGTATTTCTCCTCAGGTGTGCTCTCTGAGAGGCCTGGCGGAGCCAAAGACGTAAAGCAGCGTGAAGAAAGCCCAAAACCTTTTTCTGACTGTTTGTTGTAATCTTGTCTTTGTTTGCTTATTTGCAGGCTTTGTTATTTTAGTCTCTTTCTTTGGCTAGAAAAATTATGCTTGCAATATTTTGCTTGAGAATGATTTTACGTGATGCGATTATTAGGGTtgatttgtcaaaaaaaaaaaaaaagcttctgtaGGAAAAGTGTCTGTCAAAAGGTGTTGTTGCAGTATCGGTCGGGATTATCAAAGTTGTTCCGCCCCGGAAGTAGAGAACAAGGCCGCCATGTTATATTTTCATTTCTATTGTTTGTGTCAGGGGAGAGTAGATGGGTTttgatatcattttttttttttttttttaagagttcATGGGTCTGTTCTGTGTATTTTTGCATTAGCAATATTGATTGTTTAATTTACTTAAATTAGGACTTCATACTGAATTTCTCAGGATAATGAATGACATATGACAGAACAATTAAGACAAGCAACCAGGGtacaaaattagcaccatccaccagccaaatgctggtaaaatatgcaagtggctggtagctttgcttcactcaccagccaacaATAGTtttctattgagtggctggtaagaTTTCAACCTTTACTAGCCATTTGGCCAGTGGACAAACAAAAGGAAATTTTGCACTCTGCAAGCAACTATTTTCctccagagtattttttttttgtttgttatttttttttttttcagagttgGTTGACAGCCTCAACGGGAACCATAACTGATATGCACATGTAGCTGTATGGATGGTCACCATATTGTTTTACTTacctgtttattttttatttttcggcTATATTTAAAACTGAATAATAAAGATTTATTGGAAATAATA

Function


NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039815154.1 True 3336 mRNA 0.44 5 27310305 27317595

Neighbor


gene id symbol gene type direction distance location
sirt6 sirt6 coding downstream 2645 27295370 ~ 27307660 (-)
LOC120567764 LOC107384141,LOC100708490,LOC108239462,LOC107096963,LOC101482186,LOC106526414 coding downstream 48959 27252534 ~ 27261346 (-)
LOC120567762 LOC101482480,LOC102795251 coding downstream 65864 27211015 ~ 27244441 (-)
onecut3b onecut3,LOC103366680,LOC106923038,LOC107096950,LOC102305143 coding downstream 202579 27095802 ~ 27107726 (-)
LOC120567768 NA coding downstream 308253 26998041 ~ 27002052 (-)
sema4e LOC103364382 coding upstream 11487 27329082 ~ 27338096 (-)
stap2a LOC103364380,LOC104964213 coding upstream 21516 27339111 ~ 27344282 (-)
LOC120567871 sh3gl1 coding upstream 26967 27344562 ~ 27360321 (-)
LOC120567870 LOC104929640,LOC103364379 coding upstream 45958 27363553 ~ 27381615 (-)
LOC120568100 LOC103364377,LOC100710107,LOC102776083,LOC107384130,LOC103151230 coding upstream 81851 27399446 ~ 27432930 (-)
G118401 NA non-coding downstream 15005 27294283 ~ 27295300 (-)
G118339 NA non-coding downstream 110616 27198582 ~ 27199689 (-)
G118337 NA non-coding downstream 112657 27174552 ~ 27197648 (-)
G118482 NA non-coding upstream 261373 27578968 ~ 27609694 (-)
G118483 LOC103364371,LOC101475014,LOC102207447,LOC108239424 non-coding upstream 284806 27602401 ~ 27605241 (-)
G118504 NA non-coding upstream 310291 27627886 ~ 27664712 (-)
G118608 LOC103372824 non-coding upstream 777428 28095023 ~ 28099810 (-)
G118613 NA non-coding upstream 826833 28144428 ~ 28145034 (-)
cirbpa cirbp other downstream 485735 26819838 ~ 26824570 (-)
G118175 NA other downstream 644353 26661621 ~ 26665952 (-)
camk2n1a camk2n2 other downstream 990710 26315770 ~ 26319595 (-)
G117732 NA other downstream 2386987 24922203 ~ 24923318 (-)
G117560 NA other downstream 2773809 24499380 ~ 24536496 (-)
LOC120568986 epha4,LOC100711706 other upstream 325732 27643327 ~ 27675360 (-)
G118524 NA other upstream 395872 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 828676 28146271 ~ 28152770 (-)
G118764 NA other upstream 1668496 28986091 ~ 28986319 (-)
G118856 NA other upstream 2102784 29420379 ~ 29420652 (-)

Expression



Co-expression Network