LOC120567998 (prdx6,LOC101487422,LOC103365780)


Basic Information

Item Value
gene id LOC120567998
gene name prdx6,LOC101487422,LOC103365780
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14235127 ~ 14238123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815164.1
TGTCATCAGAGCTGCTGCGGGACAGACGGAACACCTTCACGGTCACACTGAACATGCCGGGACTGCTGCTCGGAGATGAATTTCCTGATTTTGAGGCGGAGACCACCAACGGCAAAATTAAATTCCACGAATTTCTCGGTGATTCATGGGGAATCCTGTTCTCCCACCCCAGAGACTACACCCCGGTGTGCACCACAGAGCTGGGTCGAATTGCAAGACTGAGCAGTGAGttcagtaaacgcaacattaaaATAATCGCCCTGTCCATCGACACCCTGGAGGATCACCACGGCTGGACCAAGGACATCCTGGCATACAACTGTGAGGAGTCTGCCTGCTGCTCGCTCCCCTTTTCCATTATAGCGGACAGAAAACGCGAGCTGGCAGTGGCCCTGGGCATGTTGGACCCAGATGAGAAGGACAAAGATGGCCTGCCGCTTACTGCCCGCTGTGTGTTTATTATTGGCCCCGACAAAAGGCTGAAACTGTCACTTCTCTACCCGGCCACCACCGGACGCAACTTTGATGAGATCTTGCGAGTGGTGGACTCACTCCAGCTCACAGCAGGGAAACGAGTGGCAACACCTGCCGACTGGAGGCCTGGAGACTGTGTGATGGTCCCTCCCAACATGTCTGAGGAGGAGGCTGCCTCTTTGTTCCCAGCTGGCGTCTACACCAAAGACCTGCCCTCTGGCAAGAAGTACCTGCGCTACACACCCCAGCAATAAGCACGGGCAGAGACAGCACTGATATTCAACACTCACTTATGTCACACTTAATAAAGCAGCTGGCAATCATGGACCTTCAGGACCTTGAGTTACTGCTAGTTTTTGTCCCTACCAGGTAGATAAACAAGTCAGCGGGCATCCCACTTGTGCCTTAATGGATGGAATAAAAATGAATGCCTTAAGGAATATGTAGGACTTTTCTAAATTAGAgattttacagtatttacaaCCCCCAATAATAAAAGCTACTATGTTCAGCCCACTTTTCTAAAGGGGATGGTTTTTGGAAACATATGTGGTTGAGATGGgaacacatttttaatttaaatatatagcaaacagtttattatatacagtatggcaGAGAAGTTTCTGTTTTGTAACAGTGCTATACTATCAGGGTTAAAATATTTTGGATCATGTATGTATTGTCTACCTATGCACATCTTTTTGGATGCAAGAGGATGCAAACAATGTTATTTCCATGCCATTTTATCTGACAGGTGTACTCCATTAAACACAGTTAGTTACA

Function

symbol description
prdx6 Predicted to enable peroxidase activity and peroxiredoxin activity. Predicted to be involved in cell redox homeostasis. Predicted to be active in cytosol and mitochondrion. Is expressed in alar plate midbrain region; digestive system; immature eye; nervous system; and otic vesicle. Orthologous to human PRDX6 (peroxiredoxin 6).

NR:

description
peroxiredoxin-6

GO: NA

KEGG:

id description
K11188 PRDX6; peroxiredoxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815164.1 True 1260 mRNA 0.47 5 14235127 14238123

Neighbor

gene id symbol gene type direction distance location
LOC120567821 LOC101487896,LOC103365967 coding upstream 7461 14225001 ~ 14227666 (+)
c8a NA coding upstream 179605 14049498 ~ 14055522 (+)
rgs11 rgs11 coding upstream 241529 13985299 ~ 13993598 (+)
LOC120567849 LOC104930846,LOC103354334,LOC100696120 coding upstream 534244 13688421 ~ 13700883 (+)
LOC120567846 LOC103354336,LOC103398841,LOC101469236,LOC104930847,LOC100702297 coding upstream 585331 13645229 ~ 13649796 (+)
LOC120568001 jun,LOC104967900 coding downstream 19436 14257559 ~ 14259688 (+)
mgst3a mgst3 coding downstream 80552 14318675 ~ 14321387 (+)
LOC120568146 LOC103364811,LOC100690866 coding downstream 92468 14330591 ~ 14340646 (+)
LOC120568347 NA coding downstream 202746 14440869 ~ 14454235 (+)
tmem125b LOC103364166,LOC104960834,LOC100711868 coding downstream 311244 14549367 ~ 14551031 (+)
G114406 NA non-coding upstream 915 14191963 ~ 14234212 (+)
G114398 NA non-coding upstream 60542 14173992 ~ 14174585 (+)
G114376 NA non-coding upstream 178675 14055693 ~ 14056452 (+)
G114371 NA non-coding upstream 194891 14038682 ~ 14040236 (+)
G114350 NA non-coding upstream 263846 13971065 ~ 13971281 (+)
G114428 NA non-coding downstream 75479 14313602 ~ 14314015 (+)
G114429 NA non-coding downstream 76180 14314303 ~ 14314633 (+)
G114488 NA non-coding downstream 99699 14337822 ~ 14341341 (+)
G114550 NA non-coding downstream 320242 14558365 ~ 14560677 (+)
G114561 NA non-coding downstream 388044 14626167 ~ 14626770 (+)
si:ch73-71c20.5 NA other upstream 1048763 13183284 ~ 13186364 (+)
ndufb3 ndufb3 other upstream 1109664 13123030 ~ 13125463 (+)
rpl37a rpl37a,RPL37A other upstream 1117771 13114596 ~ 13117356 (+)
col6a1 col6a1 other upstream 1160533 13010575 ~ 13074594 (+)
LOC120569010 NA other upstream 1274778 12952548 ~ 12960349 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 49027 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 747654 14985777 ~ 14993083 (+)
ro60 trove2 other downstream 775620 15013743 ~ 15026208 (+)
G114789 NA other downstream 913673 15151796 ~ 15157199 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other downstream 1100434 15338557 ~ 15368780 (+)

Expression


Co-expression Network