rnf182


Basic Information

Item Value
gene id rnf182
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5917149 ~ 5924931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815241.1
AAAGCCTCTTCCGTGATGTCCAGTTTTCACTCGTGGAAGTGAAGTATACACCCAAAGCCCATGaaaggcatttttgcccccAAACGAAGCGCCGTTACCCCAACTGCTCGGGAGGCAGGAGAACGCCAGAGGCCCGAACTCACGAGGGACTTCCCTCATCAACTCCCaaacctctctcacacacacacacacacacacacaaccacgcagccacacacacacatactgtacactgcaGGAGGCTGTTGGACAGCCACAATGAAGCCCAGACCTTCAGTGGAGTGGACCATTGTCACCCTCTCCATCTATGGGAAACTTGCCGTGGCCCTCGTTGCTGAGCCTGGACCGGAGCTTTTGGTTGGATCTTTCTGTTGACCTCAAGATAGATACGGATCTTAAGCTGTAGGATGATGATTGAGCTGCACGGCGCTGAGGATGGCGGCGGCGGTGGCGGCCACGTGGACATACTGAGCGCCGAGGAGCTGGAGTGTAAGATTTGCTACAGCGCGTACAACCTGGGGGGTCGCAGGCCCAAGGTGCTCGAGTGCTGCCACCGCCTGTGCGCCAAGTGCCTCACGAAGATCCTGGACCTCGGTGAGTCGCCTCCCAACGCCCTCGTGTGCCCGTTCTGCCGCTACGTCACCAGACTGCCGGGGCCGGCGGCGAGCAGCCTGCCGGACGACTGCAACCTGGTGGCGGCGCTGGCCTTCCGAAGCAGGAACCACAGGAACCTCCACTTCCACCACCAGGAAGCGAGCGCGGAGCTGCTCCTCAGCCCCAGAGGCCTGAGCTCGCTGCTGAGCAGCAACCCGCCCGTCACgtccccttcctcctcttcgtctgcttcctcttcctccaacGCCTACTCCTCCATCCGGGGCTCCCCGAACTTTGTGCTCATCACCATCATGGAGCCTCCGCCGAGGCCCGCGTCCACGCCAGACCTCCGTCGCCACGACGCGCTACTTGGATCCCGCGCGTCGAACCGGAGCTTCCGCTCATCCAGCCCGGACTCCATGGCGTCCGTCACGCAGCGGTGGACGGTGTGGAACTGCGCGTCCCTCCTGTGCCAGACGTCGGCGCGGGCGCTGGTGTGGGTGCTGGGCCTGCTGTACTTCAGCTCGCTGCCCATGGGCGTCTACCTGCTCATCATGCAGAGGACGACGCTCGGCATGCTGCTGGTGAGCCTGGTTCCCGCCAGCCTCGTCCTGATCATGGTCTACGGCTTCTGCCAGTGCATCTGCCACGAGCTGTGGGACTGCTTGCCCCGTAACGGGACCGGGACATGAACGGGCAACGGTTTGCTTTGAATATGCTTGACAATGGATCTCCAGAATTCACTAATGGGGGGGACGTTACTGTGTAACTGACCACGTAGACTCTTCAGTAGCAGAAATATCTCTCCTTTTCTTTACCGAAGGAGAGGGCAAGAACATTATGTACATTACAAATGGAACTTTTCATCATTATACATGTTCATTTGTGCTTTGTTTATTAGCTTGGTAGCCAACTAATTACCCGATAGAGCTCAAAGTGTCAGATTTAGTTCAAACTTCAATGCCAATTATGGTGGaattcataataaaataaaaaaaatcaaatagagGGTATTTAAGGTGGCAATAATAACTGTATCTGCCACATGGATGTCATTTGTTTTAGATTGCGTCACAGCCTTACAGGCATCACGTGtgaactttttttcaaaaagcaaGACAAATCAAAATTCCCGCACACACTTTTCACCTCTgcttttggttttatttgtcgACTTTTCGGTCCCAGGGACCTTTCTCTAGACACGTTATCATCAGGTGTCTATTATGTCTAAGTCTGGCAGCTGAAATAAATCTATTCAATAGAAA
>XM_039815242.1
CCGTGTCAAGTTAAACAGCCCATGaaaggcatttttgcccccAAACGAAGCGCCGTTACCCCAACTGCTCGGGAGGCAGGAGAACGCCAGAGGCCCGAACTCACGAGGGACTTCCCTCATCAACTCCCaaacctctctcacacacacacacacacacacacaaccacgcagccacacacacacatactgtacactgcaGGAGGCTGTTGGACAGCCACAATGAAGCCCAGACCTTCAGTGGAGTGGACCATTGTCACCCTCTCCATCTATGGGAAACTTGCCGTGGCCCTCGTTGCTGAGCCTGGACCGGAGCTTTTGGTTGGATCTTTCTGTTGACCTCAAGATAGATACGGATCTTAAGCTGTAGGATGATGATTGAGCTGCACGGCGCTGAGGATGGCGGCGGCGGTGGCGGCCACGTGGACATACTGAGCGCCGAGGAGCTGGAGTGTAAGATTTGCTACAGCGCGTACAACCTGGGGGGTCGCAGGCCCAAGGTGCTCGAGTGCTGCCACCGCCTGTGCGCCAAGTGCCTCACGAAGATCCTGGACCTCGGTGAGTCGCCTCCCAACGCCCTCGTGTGCCCGTTCTGCCGCTACGTCACCAGACTGCCGGGGCCGGCGGCGAGCAGCCTGCCGGACGACTGCAACCTGGTGGCGGCGCTGGCCTTCCGAAGCAGGAACCACAGGAACCTCCACTTCCACCACCAGGAAGCGAGCGCGGAGCTGCTCCTCAGCCCCAGAGGCCTGAGCTCGCTGCTGAGCAGCAACCCGCCCGTCACgtccccttcctcctcttcgtctgcttcctcttcctccaacGCCTACTCCTCCATCCGGGGCTCCCCGAACTTTGTGCTCATCACCATCATGGAGCCTCCGCCGAGGCCCGCGTCCACGCCAGACCTCCGTCGCCACGACGCGCTACTTGGATCCCGCGCGTCGAACCGGAGCTTCCGCTCATCCAGCCCGGACTCCATGGCGTCCGTCACGCAGCGGTGGACGGTGTGGAACTGCGCGTCCCTCCTGTGCCAGACGTCGGCGCGGGCGCTGGTGTGGGTGCTGGGCCTGCTGTACTTCAGCTCGCTGCCCATGGGCGTCTACCTGCTCATCATGCAGAGGACGACGCTCGGCATGCTGCTGGTGAGCCTGGTTCCCGCCAGCCTCGTCCTGATCATGGTCTACGGCTTCTGCCAGTGCATCTGCCACGAGCTGTGGGACTGCTTGCCCCGTAACGGGACCGGGACATGAACGGGCAACGGTTTGCTTTGAATATGCTTGACAATGGATCTCCAGAATTCACTAATGGGGGGGACGTTACTGTGTAACTGACCACGTAGACTCTTCAGTAGCAGAAATATCTCTCCTTTTCTTTACCGAAGGAGAGGGCAAGAACATTATGTACATTACAAATGGAACTTTTCATCATTATACATGTTCATTTGTGCTTTGTTTATTAGCTTGGTAGCCAACTAATTACCCGATAGAGCTCAAAGTGTCAGATTTAGTTCAAACTTCAATGCCAATTATGGTGGaattcataataaaataaaaaaaatcaaatagagGGTATTTAAGGTGGCAATAATAACTGTATCTGCCACATGGATGTCATTTGTTTTAGATTGCGTCACAGCCTTACAGGCATCACGTGtgaactttttttcaaaaagcaaGACAAATCAAAATTCCCGCACACACTTTTCACCTCTgcttttggttttatttgtcgACTTTTCGGTCCCAGGGACCTTTCTCTAGACACGTTATCATCAGGTGTCTATTATGTCTAAGTCTGGCAGCTGAAATAAATCTATTCAATAGAAA

Function

NR:

description
E3 ubiquitin-protein ligase RNF182

GO: NA

KEGG:

id description
K11983 RNF182; E3 ubiquitin-protein ligase RNF182

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815241.1 True 1865 mRNA 0.55 2 5919249 5924931
XM_039815242.1 False 1826 mRNA 0.55 2 5917149 5924931

Neighbor

gene id symbol gene type direction distance location
myo10 myo10 coding upstream 248432 5501683 ~ 5668717 (+)
LOC120568538 NA coding upstream 508528 5404453 ~ 5408621 (+)
adcy8 adcy8 coding upstream 580657 5199093 ~ 5336492 (+)
oc90 NA coding upstream 1028937 4837464 ~ 4888212 (+)
LOC120567839 hhla1 coding upstream 1082096 4805564 ~ 4835053 (+)
ranbp9 ranbp9 coding downstream 12378 5937309 ~ 5971411 (+)
LOC120568054 NA coding downstream 106022 6030953 ~ 6053260 (+)
LOC120568059 NA coding downstream 130827 6055758 ~ 6057484 (+)
stard3nl stard3nl coding downstream 159798 6084729 ~ 6105817 (+)
LOC120569021 NA coding downstream 266841 6191772 ~ 6250662 (+)
LOC120568048 NA non-coding upstream 18738 5893923 ~ 5898411 (+)
G112252 NA non-coding upstream 196509 5719421 ~ 5720640 (+)
G112246 NA non-coding upstream 210266 5705631 ~ 5706883 (+)
G112237 NA non-coding upstream 217595 5699334 ~ 5699554 (+)
G112217 NA non-coding upstream 430556 5421031 ~ 5486593 (+)
G112282 NA non-coding downstream 947 5925878 ~ 5928002 (+)
G112283 NA non-coding downstream 1743 5926674 ~ 5928936 (+)
G112286 NA non-coding downstream 42122 5967053 ~ 6011802 (+)
G112301 NA non-coding downstream 136027 6060958 ~ 6070370 (+)
G112302 NA non-coding downstream 137872 6062803 ~ 6070610 (+)
LOC120568547 LOC106674584,LOC106676354,LOC106675207,LOC106675343,LOC106676464,LOC106676424,LOC106675739 other upstream 127732 5788223 ~ 5789417 (+)
dnaaf11 NA other upstream 1324802 4498994 ~ 4592347 (+)
G111910 NA other upstream 1371067 4545425 ~ 4546082 (+)
tmeff1a tmeff1,LOC102775778 other upstream 1590963 4212124 ~ 4326186 (+)
G111850 LOC102799398 other upstream 1778216 4090508 ~ 4138933 (+)
epdr1 epdr1,LOC104965688 other downstream 58926 5983857 ~ 5993711 (+)
LOC120568055 NA other downstream 78754 6003685 ~ 6016600 (+)
G112400 NA other downstream 326459 6251390 ~ 6321990 (+)
LOC120568552 dip2c other downstream 649865 6574796 ~ 6682272 (+)
G112562 NA other downstream 816170 6741101 ~ 6770912 (+)

Expression


Co-expression Network