LOC120568053


Basic Information

Item Value
gene id LOC120568053
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6060725 ~ 6062992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815247.1
CCCAGCTCCACGCTGAGCACGTTGGCTTCCCGCTCACTGATCTGCTGAAGTGGGAACTGAAAGGAGCAAAAGGACCTGAGTTTTGGTTGAGTCAGAGCACGGACTTCTATTTGTGTTTGGAGAAACTCACAGTCACTGCCACGAGGTGAAATGGCACAGAAACGTGTTAGGCTGGTTCGGGAAACTTTCTCTTGTGTgatctgtctggatctactgaaggatccggtgactattctctgtggacacagctactgtATGGACTGTATTAAAGCTCACTGGGATGGAGAGGGTGAGAAGCAGATCTACAGCTGTCCTCAGTGTAGAAAGACTTTCACACCGAGGCCTGTACTGCggaaaaacaccatgttagcagatttagtggagcaactgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGAAAACTGAAAGCCCTCAAGTCCTGTCTGGTGTGTCTGGTCTCTTACTGTGATCAACACCTTCAGCCTCATCATAACTCCTCTGCGTTtgagaaacacaagctggtggagcccTCCAAGAATCTCCAGGAGAACATCTGCTCTCTtcatgatgaggtgatgaagattTTCTGTCGTACTGATCAGCAATGTATCTGTTATCTCTGCACTGTGGAtgaacataaaggccacgacaccgtctcagctgcagcagaaaggactgagaggcagaaagagctcgaggggagtcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacgGGAGGTGGAGGCTATCAATAGCTATGCCAATGAAGCAATGGAGGACACAGAGAATCTCTTTACTCAGCTGATCTGTCTCATGGAGACAAGACGCTCcgatgtgaagcagcaggtcagatcgcAGCAGAAAACTGAATTGAGCCGAGTCAAAAAGGTTCAGAAGAAGCTAGAtcaggagatcactgagctgaagaggaaagacgCTGAGATGAAGAAGCTCTCAGACACAGAGGATCACAcccagtttctacacaactactcctcactgtcaccactcagtGAATCTACAGACTCACCCAGCATCAATATCCGTCCTATGCGCTACTATGGTTATTTGATAGCAGGTGTGTCAGAAGTCCGAGACAAACTACAGGACACTGTGAGCGAGTTGTGGACAAACCTGTCGACGCCTGCGACCGAAGTGGACGTCCTACTGCCAAATCCACAATCGgagcccaagaccagagctgaattcttaaaatattcgcaggaaatcacactggatcccaacacagcaaacacacacatgttgtTATCTGAGAGGAACCGAAAAGCAACATTGCTCATAGAAGAACAGTCTTGTTCCAGTCACCCAGACCGATTCACCGGATGTCGACAGGTCCTGAGTAAAGAGAGTCTGACCGGatgttgttactgggaggtggagtggACCGGGAGAGGCGTTCAGGTAGCAGTCGCGTACAACGACATCAGCAGAGGAGTGAGCTTCCGTGAATGTGCATTTGGATTGAATGACAAATCCTGGGCGTTAGACACTTATTCAAATAGTTTCTTGCACAACAAAGTCAAAACGCTCCTCTCAGGTCCTgtgtcctccagagtaggagtgtacctggaccACAGCGCAGGtcttctgtccttctacagcgtctctgacaccatgactctcctccacagagtccagaccacattcactcagcctctctacGCTGgccttctgtttttcttttgtggaGCCACTGCCAAGTTCAGTAAACTCAAATAGACAGAAGTCAGTCAACGGACAATgggttaaattctgtgtttttgaATTGTCAAACAAGACCCATTTTTGTCTACATTATTATAGATTAGAGCTCATTGTTGTCTGCTCAACAGAGATCAGGTTGCAGTCAAACATTATGGCTGGTACTTTCAGTAGtacttttgtaaatgttttttttttaactggcacttctcccttttattttttttacatcgcTGAGATTTTAATCAAATATATTGGTTTTGTGAACAAAACTGAATTTACAAGATCAATAATTTACACGAACAAAGTATTTTCTTCTTGTCTTCATTCCAGGGTATCATTACAAAGCTGAAGGAGAAAATGTGACAGTGATATGAGAGTATacggattatttttttttttttttagtcccTAACTGAAAATTTTTGTGGCACAGGCAGACATTTTTTGGGGGCGCACATC

Function

GO: NA

KEGG:

id description
K12023 TRIM47; tripartite motif-containing protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815247.1 True 2268 mRNA 0.46 1 6060725 6062992

Neighbor

gene id symbol gene type direction distance location
LOC120568550 LOC107380363,LOC107396089,LOC107391794,LOC107390451 coding downstream 14473 6045322 ~ 6046252 (-)
nol7 NA coding downstream 78187 5977281 ~ 5982538 (-)
LOC120568045 fam134b coding downstream 143585 5888027 ~ 5917140 (-)
LOC120568924 NA coding downstream 175308 5874452 ~ 5885417 (-)
LOC120567973 NA coding downstream 192315 5842529 ~ 5868410 (-)
LOC120568672 NA coding upstream 14159 6077151 ~ 6078837 (-)
LOC120567957 NA coding upstream 102156 6165148 ~ 6169113 (-)
LOC120567958 LOC106675582 coding upstream 112581 6175573 ~ 6178577 (-)
trnas-uga_1 NA coding upstream 137670 6200662 ~ 6200743 (-)
trnas-cga NA coding upstream 142400 6205392 ~ 6205473 (-)
G112352 NA non-coding downstream 66952 5922747 ~ 5993773 (-)
G112332 NA non-coding downstream 268962 5774413 ~ 5791763 (-)
G112253 NA non-coding downstream 338755 5720657 ~ 5721970 (-)
G112245 NA non-coding downstream 356151 5704296 ~ 5704574 (-)
G112241 NA non-coding downstream 362784 5697688 ~ 5697941 (-)
G112383 NA non-coding upstream 19649 6082641 ~ 6105817 (-)
G112381 NA non-coding upstream 50470 6113462 ~ 6116144 (-)
G112453 NA non-coding upstream 284343 6347335 ~ 6347853 (-)
G112460 NA non-coding upstream 293806 6356798 ~ 6357990 (-)
G112461 NA non-coding upstream 295087 6358079 ~ 6359329 (-)
G112328 NA other downstream 208278 5793163 ~ 5852447 (-)
LOC120568546 NA other downstream 314644 5723733 ~ 5746081 (-)
G112233 NA other downstream 392038 5664004 ~ 5668687 (-)
G112046 NA other downstream 1776642 4267538 ~ 4284083 (-)
G112043 NA other downstream 1822055 4238102 ~ 4238670 (-)
LOC120567959 NA other upstream 109289 6172281 ~ 6178886 (-)
zmynd11 zmynd11 other upstream 632618 6695610 ~ 6736512 (-)
si:ch211-267e7.3 LOC103370300 other upstream 893448 6956440 ~ 6990122 (-)
cdh6 LOC103366829,LOC104926815 other upstream 1013617 7076609 ~ 7163670 (-)
trnak-uuu_16 NA other upstream 2424475 8487467 ~ 8487539 (-)

Expression


Co-expression Network