fam78ba (LOC108248539,LOC106530399,LOC103357776,LOC101481240,LOC104920913,LOC105925252,LOC103479089)


Basic Information

Item Value
gene id fam78ba
gene name LOC108248539,LOC106530399,LOC103357776,LOC101481240,LOC104920913,LOC105925252,LOC103479089
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15568830 ~ 15573140 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815273.1
CCCTCCCCTGCCTCTCTAGCATCAGCACCTCCGAACAAGGCGACCCGCGGCTGGAAAAGGATGCTCTACGGTCCGCGATGCACACCAGCTCGAGGAGACATAACGATGAGACGACTAACCGAGAGACGCTCGAGCGGCTGGGTCAAGGTGATGAAGACCCAGCTTTTGTCTTTTGAGGGCGCCGCGCGAATGTAGGGCTACAGGAAAGCCAAGCAAACAAAAGGCATCcagccccctcccccctcctctgaCGCACCTGGCTGCCCTGTCGCCACTTGACATGACAGCGCAGAGCCGGGAGCAGAGCAGCAGGATCAAGGGGCACCGACGTGCAGCCGGGCGTGTGGACTCGACAAGGAATAGAGGAGCCTCCGGACGCACGGcggagaagcagcagcagcccagGGGAGGTCGGATTGCAGTTTCTGGGGACGAGCGCCAAGGGCAGTGCGGCAGTCAGCAGGCAGACCGGGGGGAGGAGGCTGCGGAGATCTGTGATACTTCCCCCCCAGGCCCCACTGCGCGCTCACCCCCATATCATCCTGAAAATATGACGGTGGACGCTTTTATGTTTGAGCAATGGTGACTGTAAAACTCCCCATcactttctgtcctttttttcctccccaaCCAATCAGTGATGATGGGCAATTAAAAGATTAGATCTGCTCTTCAGGCAAGGGTGGACCCCGGAGGGGACTGATGTGCATACTGGCCAGGTATCATTTGCTCCCTTCTTCTCTGGTTTTGCTCATTTTGCTTGTCGCCTGCACTATGGGCTGTATTCAGAGCATcgcatgcaagccccgcatcaGACGGGAGAACATTGTGGTGTACGAGGTGTCAGCCTCTATTGACCAGTGTCCTACCATCATTGAGGAGAACTCACCGATTGTGCTCCGTTACAAGACGCCTTACTTTAGGGCCTCAGCAGGTGTTGTGATGCCACCAGTGCCCCGCAATGAAACCTGGGTGGTGGGCTGGATCCAGGCTTGTACCCAGATGGAGTTCTACAACACCTATGGTGATATTGGCATGTCCAGCTGGGAGTTACCGGAGCTTCGAGAGGGCCGGGTCAAGGCCATCAGCGACTCAGATGGCGTCAGCTACCCCTGGTATGGCAACACCACCGAGACAGTCACACTGACCGGACCTACGTCCAAACCGTCCCGTCTGACGGTCAGCATGAATGACAACTTCTACCCCAGCGTGACCTGGGCAGTACCCATCAGCAACAGCAACACGCCCATGCTGACCCACATCACCAGGGACCAGAGCTTCATCACCTGGCTGGTGGCCATGAACTCCGTCACCAAGGAGCGCATCGTGTTGCAGACGGTGCGGTGGCGGATGCGGGTGGACATTGCTGTGGACCCTGACATGCCTCTGGGCTCTCGGGCCTCGTTGGTGGGTCGTCCCTACCAGGAGCAACCGCACATCCTCAACTACCAAGAGCCCATCCCTCCCAACGCGCTGGGAAGGCCGAATGCCAACGACGCCCAAGTGCTAATGTGGAGGCCACGGAGAGGGGCGCCACTAGTGGTCATACCGCCAAAATAAGAGGGTCAAATGGTTGCACAGACAAAAGTATACATTTTCCCTCTTGCAGAAAAAGGGGATATGAAGGTGATGAAGTCATGAAGCCTATCAGAGAAGAGAGAACCGATGGTTTCCCTGCGCTCAAGATGCCAGTGGCTCATTATCCCTGAAAGATTTAAGTGGACCAGTATAACAAGCCAGAGTGGATATTACATCTGGGATCTGACACAGCACGGTGTCAGAATGGAAGTCTACAACAAACTAGTGTCAAGGGCCCAGGTTGCATCAAGGCTTTTTTGGCCCACACCACGTTTTGGACTGCGTTAAAGAGTTCTGCCTGCTTTTAGCGAAGAAGGAACGCTGTTTTTAGAACCACAGAGGTATTAGACCACAACGAGAACTGCATCCTGCATCCTTATGTAGATCTTATTGcatgagagagtgagagagacacaaGAAAAAACTGTCCTTGAGAAGTTTAAAGTTAGCATTTGTTTTGTATAACTTGATACCTGAAGACATTTTGATTGAAAAGCCAGCCAAAAGAATCCCTGCGGGCTGGTTAAACCTCGATAGTGCCAACAAAGGCCTTCAGCACACTCAGTACCAGAGTTAAAGGATGTATTCAGAGAATTTAAAAGAGACAAAGTATTATATGAATCTTTTTAAGTTAAGATAAACTCATGCATCAATCAGATTGTATTAAGAGCACCCACCTTGCATAAAAGTCTGGAAGAAAAACTGTTGTAGTTTTCACTGGAGTTTTGCTAATacaccagattttttttcttttattttcaactCCCTCGACCTCCGTTGTGCAGCAGGTATTTTATTAAGATGGGTGACAAACTATTAGAGAAAGGAGTTGGATCTGTTaatagattaaataaataatgtcagCTATGCTTTCAATAAGTGTAATGACTTGGAAAAGTGCCAtacaacacatttaaaacaagagGGTGATAGCTGGAATGGGGCCAAATTGTACTCAGACCTAAAGTAGATTTGATGTGACACTAATCAGGCCATGTTGCACTACCAAGTTACATAAATCTCCCTACAATCAGGGAATCCTAAATCTTCTCTTAATAGTTCCCTTGGTGTGGAATTAAACCAGACTGCATTTTGAAAATGATTGAGTTGAATTAGTGCCATTATTTAACACtggatgtactgtatatcacagCTTCTCCTCATATCGTTAACATATATTATTTTGCAGTAGGCTTCTGCAGATAATCACAGATGAAGGTTTCCTGTGTCATGGCTATGGTCTGTCCTGTGGCTCATCCTGGGCTCACTCCAAGACTCTGCCTGCCACTTCACACAGGACTCACGACTCATCCTCCATCTGTGCTTCTCTCCAGGTTCACACCTCACCTTCCCAATCTGCCTGCTCATTTTTTCCCTGTGTCTgtccacatcatcacacacataaTCTCTATTCATTTACACTCATTTGCTCTGAAATCCACAACTATGCAAAGATTATCTGTGACTGTAAACAAATCAGAAGGAAAAAAACTGGCATAATAGGAAAGATGTGTATTTTTGCTCATCTGCCTCGATCTCTTTCGTTTGCCAGGGTCATTGTTGAATAAAAATGGTTATTGTAAATGTAAAGTACTCAAAGAGGTTAAAATAGGTTATATTAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815273.1 True 3200 mRNA 0.49 4 15568830 15573140

Neighbor

gene id symbol gene type direction distance location
imp3 imp3 coding downstream 14861 15549860 ~ 15553969 (-)
zgc:55943 clg18h1orf21,LOC104920916,LOC103358173,LOC102298056 coding downstream 21473 15537896 ~ 15547357 (-)
si:ch211-13f8.2 NA coding downstream 33027 15529158 ~ 15535803 (-)
LOC120568593 LOC104948391 coding downstream 49902 15484190 ~ 15518928 (-)
LOC120568743 NA coding downstream 106231 15452439 ~ 15462599 (-)
bcl6ab NA coding upstream 7636 15580776 ~ 15587884 (-)
cldn1 cldn1 coding upstream 43257 15616397 ~ 15620659 (-)
pigk pigk coding upstream 350562 15923702 ~ 15954239 (-)
zzz3 zzz3 coding upstream 460142 16033282 ~ 16054068 (-)
usp33 usp33 coding upstream 481119 16054259 ~ 16077214 (-)
G114883 NA non-coding downstream 161203 15407377 ~ 15407627 (-)
LOC120568803 NA non-coding downstream 175571 15387478 ~ 15393259 (-)
G114836 NA non-coding downstream 302606 15264520 ~ 15266224 (-)
G114752 NA non-coding downstream 486850 15076141 ~ 15081980 (-)
G114733 NA non-coding downstream 565785 15001144 ~ 15003045 (-)
G115017 rps8 non-coding upstream 147879 15721019 ~ 15727229 (-)
G115041 NA non-coding upstream 161914 15735054 ~ 15735281 (-)
G115042 NA non-coding upstream 162340 15735480 ~ 15735895 (-)
G115043 NA non-coding upstream 163389 15736529 ~ 15736827 (-)
G115048 NA non-coding upstream 168684 15741824 ~ 15745228 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other downstream 264220 15290082 ~ 15304610 (-)
G114680 NA other downstream 771786 14795918 ~ 14797044 (-)
LOC120568687 NA other downstream 950606 14613613 ~ 14618224 (-)
tfr1a NA other downstream 1600019 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 2086605 13469531 ~ 13482225 (-)
G115164 btf3l4 other upstream 571020 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 609514 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 744278 16317418 ~ 16327426 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other upstream 757812 16330952 ~ 16335956 (-)
G115312 ralbp1,LOC102778314 other upstream 1063968 16637108 ~ 16639812 (-)

Expression


Co-expression Network