copb2 (copb2,LOC101157089)


Basic Information

Item Value
gene id copb2
gene name copb2,LOC101157089
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28239490 ~ 28249087 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815289.1
CGCGAGATTTAGATTCAGGAAGTTCCACGTCAGTATCCAGTGCTCTGTTCACTGAAGTCGCAACATTTTGGACCCTGATTGCAACTGTACGCAACTAATTTATCTGATTTTATTGTGACAACACGGGGATAGAACATGCCTCTGAGGCTGGACATCAAGCGGAGGCTGACAGCCAGGTCAGACCGAGTGAAGAGTGTGGACCTTCACCCAACCGAGCCATGGATGCTGGCCAGTCTGTACAACggcagtgtctgtgtgtggaacCACGAAACACAGaCTCTGGTCAAGACTTTTGAAGTGTGTGACCTCCCTGTCAGAGCTTCTAAGTTTGTGGCAAGGAAGAACTGGGTCATTACAGGAGCGGATGACATGCAGATCCGAGTGTTCAACTACAACACTTTGGAGCGTGTCCACATGTTTGAGGCCCACTCTGACTACATTCGTTGCATCGCTGTCCATCCGACCCAGCCCTATATCCTCACCAGCAGTGATGACATGTTGATCAAGCTATGGGACTGGGACAAGAAGTGGTCGTGCAGCCAGGTGTTTGAGGGTCACACTCACTATGTCATGCAGATTGTCATCAACCCCAAGGACAACAACCAGTTTGCCAGTGCCTCCCTGGACAGGACAATTAAGGTTTGGCAGCTAGGCTCTTCATCTCCCAATTTCACTTTGGAGGGTCACGAGAAAGGAGTCAATTGTATTGACTACTACAGTGGAGGAGACAAGCCCTACCTCATTTCAGGGGCTGACGACCGCCAAGTGAAGATCTGGGACTACCAGAACAAAACCTGTGTTCAGACTCTGGAGGGCCACGCCCAGAACGTCTCTTGCGTCAGCTTCCACCCCGAGCTGCCCATCATCATCACTGGATCAGAGGACGGTACGGTGCGGATCTGGCACTCAAGCACTTACCGCCTGGAGAGCACTTTGAACTATGGCATGGAgagagtgtggtgtgtgtgcggcCTCAGGGGCTCCAACAATGTGGCGCTGGGCTACGACGAAGGCAGCATCATCATCAAGGTGGGTCGGGAGGAGCCGGCAATGTCTATGGACACAAACGGAAAAATCATCTGGGCTAAACACAGTGAAATCCAGCAAGCCAACCTGAAGGCCATGGGTGATGCCGAGATCAAGGACGGAGAGCGGCTGCCATTGGCTGTTAAAGACATGGGCAGCTGTGAGATTTACCCCCAAACCATCCAGCATAACCCTAATGGAAGGTTTGTTGTGGTGTGCGGAGATGGAGAGTATATCATCTATACTGCCGTGGCTTTGAGGAACAAGAGCTTCGGCTCAGCGCAGGAGTTTGCCTGGGCACATGACTCATCTGAatatgCCATCCGAGAAAGCAACAGTATCGTCAAAATCTTCAAAAAtttcaaagaaaagaaatcttTTAAACCTGACTTTGGAGCTGAAGGGATCTATGGAGGCTTCTTGCTTGGGGTCAGGTCAGTGAATGGACTGGCTTTTTATGACTGGGAGAACACAGAGCTGGTCCGCCGCATCGAGATCCAGCCCAAACACATCTTCTGGTCAGACTCTGGTGAACTGGTCTGCATCGCTACGGAGGAGTCCTTCTTCATTCTGCGTTATATGTCAGAGAAAGTAGCTGCTTCTCAAGAGAACAATGAAGGAGTGACCGAGGATGGTATCGAAGATGCCTTCGAGGTCCAGGGAGAGATCCAGGAGATTGTGAAGACTGGGCTCTGGGTAGGAGACTGCTTCATCTACACCAGCTCCGTGAACAGACTCAACTACTATGTAGGAGGAGAGATCGTCACCATTGCTCACCTGGACAGAACCATGTACCTGCTGGGTTACATACCAAAAGATGATCGCCTGTACCTGGGAGACAAGGAGCTCAACATTGTCAGCTACTCCCTGCTGGTCTCCGTCCTGGAGTACCAGACTGCCGTAATGAGGAGGGACTTTGGAATGGCTGACAAGGTGCTTCCCACTATTCCTAAAGAGCAGCGGACCAGGGTGGCCCATTTCCTGGAGAAACAGGGCTTCAAGCAGCAGGCGCTGGCTGTGTCCACAGACCCGGAGCACCGGTTTGAGCTGGGGTTGCAGCTGGGAGAGCTGAAGATAGCTTACCAGCTAGCTGTGGAGGCAGAGTCGGAGCAGAAGTGGAAGCAGTTAGCGGAGCTGGCTATCAGTAAGTGCCAATTCAGCCTTGCCCAGGAGTGCCTGCACCACGCCCAGGATTATGGCGGCCTGCTGCTCCTGGCCACAGCCTCCGGTAACGCCACTATGGTGGGCAAGCTGGCTGAGGGGGCAGAGAGGGACGGCAAGAACAATGTGGCCTTCATGACCTACTTCCTGCAGGGGAATCTGGATCAGTGTTTGGAGCTCCTGATCAGGACAAACCGACTGCCTGAAGCTGCCTTCCTGGCTCGCACCTACCTGCCCAGTCAGGTGTCCCGTGTGGTCAAATTGTGGAGGGAGAACCTGGCTAAAGTCAACCAGAAGGCGGCCGAGTCTCTAGCAGACCCCACAGAGTATGAGAATCTGTTCCCCGGGCTGAAAGAAGCCTTTGCAGCTGAGCATTACCTCCGAGAGTCCTGCTTGGGCACCTCTAGGCCTGCCAAAGATTATCCTCTCGTCACGctcaACGAAGACAGGAATATTCTTGAGGAGGCTCAGGGATACGAGCCCAAAGGAACCTTCATTCCTGCTGTCCCCAAGACACAGGATAGTGAGGAGTCGGTGGCAGCAGCTCCCGTCGCTGCAGCCGTAGCAGCTGTTACGTCCTCACAGCCTGAACCTGCTGCTGCTAcggcagtggaggaggaagacatTCCAGAGTACTCGCAGTCACAGAAAGACAAGAGTCTGGATGAGCTGGATGTGGATCTGGACAACATGGAGCTGGATGACATCGACACCACAGACGTTAACCTCGATGATGACTTTCTAGATGACTGAGACCTGACACCACTCTGCTGCCCAgagcttatttaaaaaaaaagaagaagaagaaagagactAAACGccctttcccccctttttttgtatttgtacgTAAAAATATTATATTGCCGCTGAAAGCTTAGAACCTaggttgatgatgatgatgatgatatcaGTAATGACACATCATGTCTATTTCAGACTTTCCATTTTGTACACCATCTATTGATTGTTTGAGAAACTTTAACTAACTGTCCATTGAGCGATATGGTATAATCTTTGCTTTGTGTTGTCTGTAATGGCAAATCAAAGTTCATTCAGTCCAATAAACTGTGGTTGCTGtacatattca

Function

symbol description
copb2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; fin; and nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Orthologous to human COPB2 (COPI coat complex subunit beta 2).

NR:

description
coatomer subunit beta' isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815289.1 True 3277 mRNA 0.51 22 28239490 28249087

Neighbor

gene id symbol gene type direction distance location
LOC120568087 dvl3,LOC103366747,LOC101468147,LOC100700965 coding downstream 973 28221880 ~ 28238517 (-)
LOC120568085 ap2m1,ap2m1a,LOC108267679 coding downstream 18086 28206718 ~ 28221404 (-)
LOC120568084 NA coding downstream 50661 28185959 ~ 28188829 (-)
LOC120568081 LOC103372819,LOC102300262,LOC102201271,LOC101469517,LOC100690967 coding downstream 54151 28169960 ~ 28185339 (-)
LOC120567660 NA coding downstream 105286 28104455 ~ 28134204 (-)
LOC120567676 nmnat3,LOC102233219 coding upstream 1546 28250633 ~ 28270656 (-)
rbp1.1 rbp1,LOC107990174,LOC104933927 coding upstream 6158 28255245 ~ 28259903 (-)
LOC120568715 LOC104944837,LOC103366837,LOC102237248,LOC102197332 coding upstream 249860 28498947 ~ 28590144 (-)
LOC120568207 LOC103366836,LOC108239510,LOC100692307,LOC102787733 coding upstream 344251 28593338 ~ 28613393 (-)
LOC120567677 NA coding upstream 387965 28637052 ~ 28647533 (-)
G118636 NA non-coding downstream 33249 28205711 ~ 28206241 (-)
G118632 pcyt1a,LOC104957745,LOC107091881,LOC103040438 non-coding downstream 38939 28200137 ~ 28200551 (-)
G118613 NA non-coding downstream 94456 28144428 ~ 28145034 (-)
G118608 LOC103372824 non-coding downstream 139680 28095023 ~ 28099810 (-)
G118504 NA non-coding downstream 574778 27627886 ~ 27664712 (-)
G118668 NA non-coding upstream 221880 28470967 ~ 28473620 (-)
G118671 NA non-coding upstream 232552 28481639 ~ 28481897 (-)
G118678 NA non-coding upstream 407574 28656661 ~ 28657022 (-)
LOC120568122 NA non-coding upstream 449007 28698094 ~ 28699197 (-)
G118698 NA non-coding upstream 493873 28742960 ~ 28743235 (-)
metap1d metap1d,LOC102783095 other downstream 86720 28146271 ~ 28152770 (-)
G118524 NA other downstream 520731 27713467 ~ 27718759 (-)
LOC120568986 epha4,LOC100711706 other downstream 564130 27643327 ~ 27675360 (-)
cirbpa cirbp other downstream 1414920 26819838 ~ 26824570 (-)
G118175 NA other downstream 1573538 26661621 ~ 26665952 (-)
G118764 NA other upstream 737004 28986091 ~ 28986319 (-)
G118856 NA other upstream 1171292 29420379 ~ 29420652 (-)
LOC120567741 NA other upstream 1387016 29636103 ~ 29649792 (-)
LOC120568429 LOC106574020,LOC106613541,LOC103366013 other upstream 2191802 30440889 ~ 30477185 (-)
LOC120568929 NA other upstream 2615159 30864246 ~ 30876111 (-)

Expression


Co-expression Network