sec62 (sec62,LOC102781860)


Basic Information

Item Value
gene id sec62
gene name sec62,LOC102781860
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18628974 ~ 18646415 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815327.1
CGCAGCCTCGCGCCCGTCAGAGAAGCTGAGTTGGGGGATCATGGCGGAGCGCAGGAGGCACAAGAAACGGATCCAGGAGGTGAGCGAGCCCACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTCCGATTCAACTGCCCAACCAAGTCCACCAACATGATGGGCCACAGAGTCGACTATTTTATTGCCTCCAAGGCAGTGGACTGTCTGATGGACTCCAAGTGGGCCAAGGCCAAGAAGGGAGAGGAGGCGCTGTTCACCACCAGGGAGTCTGTGTTGGATTACTGCAACAGACTCCTAAAGAAGCAATTCTTCCACCGGGCTCTCAAAGTGATGAAGAAAAAGCCTGAGAAAGACAccaagaaagagaaggagaaagagaaagagaaggagaaagataAGGATAAAGAGAAGACCAAGGGGGACAGCagcaaagaggaggagagaaaagggaagaaggagaaagagaagaagaaagagtcTGAGGCTGTTGAAACCAAGAAAGAGAAGAACGATGACAGTCCTGGAACCcccaagaagaagaaagaggtgaAGAAGAAGTTTAAACTGGAGCCTCATGAGGATCAGCTGTTTCTAGATGGAAATGAGgTGTATGTGTGGATTTACGATCCTGTTCATTTTAAGACATTTGCCATGGGACTGATACTCGTCATTGCTGTGATAGCAGCCACACTGTTCCCCCTGTGGCCAGCAGAAATGCGTGTAGGAGTTTACTATCTAAGTGTTGCGGCAGGCTGCTTTGTAGCCAGTATATTGCTTCTTGCTGTtgCCCGCTGCATCCTCTTCCTGATCATCTGGCTGGTGACTGGTGGGCGCCACCATTTCTGGTTCCTCCCCAACTTGACTGCAGATGTCGGTTTCATCGACTCGTTCCGGCCACTCTACACCCACGAGTACAAAGGACCACGAGCCAGCAATAAGAAGGGCTCCGACAAGACGGACGAGAAGGACAACGATGGCAACAAGGCTCAGAAGTCAGACAGCGATGACAAATCAGACAGCGAGAAGAAGGACGgcgatgaggaagaggaagaggaggaggaggaggagggcaaaGAGGCCGAGGAGAGTAAAGAAGCAGAGGGGGAGGGAACGGGGGCGGACCGCcactcagacacagacagcGACCGCCGGGAGGAAGAAGGCTCGCAGCACAGCAACGGGAACGACTTTGAGATGATCACCAGGGAGGAGCTGGAGCAGCACACAGAGGAGGAAGACCAAGAGGAGGAAGACGAGGAGACGCAAGAGAGGAAAGAAGGGGTTGAGAGTGAAACTAAACCCCAGACTGCTGAAACATAAACTTCTTACAATCCCATCACTCTctactttttctctctctggcctttcctcccttcctcttgtGATCCCAGGACCTGCTATTCCAGCCTCTCTGAGCCTGCTGAGGCAGTGGAGAGGCTTCATCTCTTCTTGTTGAGATCTTCCACTAAACCGTTCCAATAGAACAGTACTGGGATAGACACAACAATGAAAAGTAAACGGCTACAACAATGGGGGGGGAAATCTAAAAGAAGCCTTATTGTGGATCTTATTCCTCCCACCCAAATGTTATTTATGTAAAAGTGAAAACTGCCACTGACATGTTTGCCTGAGGAAGTtgtcaacaaaaaaatcaaaccaACAAACAGTGCTGAtagagttttcattttttttctttttcatttgtgGTTTCTGGTTTTCATCTCAAGtttctttttgtcatttcaactcaaaatgttttatttttgtcctcTCTCTTTGGTTACATTTGGATGTGAGGTTGAAGCGAAGAAGAGCTATCATGCTTAACTGACCAGTAAGCGAAGACGTGCTGGTTTCTTGTTGGTACAGTCACATTAGCAAGAAAGCCCCCGTTCTTTCACCTTTTGTTGGTGTTTTGGTGAGACAGTCTGATAGCTTTCTCAGGCAGCCTTTGAaagccctgacacaccaacccgataatcggccatcggacagtctggcaaggtcagtgactcgagtctgttcggtgttccaaggcactttttggacttcggggagccgactgatcagtccaactgccttttctgccgacggtcggccatcgggttggtgtgtcagggccttaaagcAAAGTAACCTGCTTTGAAACCCGAACCAAGCCAGATGGACCAAATCCTGTAGTTTACTCGAAGGACCCTAAAAGTCAACCATGATATGGCTGGATGGAGTATTATGAAAGCAGAGTAGCACGGCTCCTTGAGgtacttgccattttcagtaagaaaaaaaatgtcttctttttttaaatggctgaTGATCATAGTGCAATCCTCTACACAGTCTGAAGTAGTTCATGTTTAATAATGTGGGACTCATCTTTAAGAGTAAATGTGAGCAACTGGGATACAGCTAGCATACTTCATCAAAGCTAGAAGATGCTACGTTCACTGGTTAACTGTCTATTTGCAAACAGAACCAGATATAAAGTAAACTCTAGTGCCAAACACAACTGATAATGATGTTATGCATGCTGATGTAATATGGAGAGTTGAGTGAAAGAGCGATGGGTACGTTTTTGTTCATTTCGTTAATTTTGTAACCGCAGTGTCAAACTCCTCAAAAGGTTTGCatctttgaaaaaataaattaaacaccGCACAAAGTTATAAGTTTGTAGCTAAACAAAGATTTTGGTCTCAGTGAAACCGTTTAAAGGTGTAAGCACTAGACTCCCATCCAAACCAGTTCTGTCTAGTCTGCATAAGCTGTTGTATGAAAATAGTGGTACTGGTCCACTAACCAGACCACATTTCATTTCCAATCAAAGCCCAGTAGCTGGCGGCCGTGGTCCAAACTGTTCCTTCACATTATCTTCTGGCTAGAAATGTCTTAGATGCTTTTTTTAGTCATAGCAAGGATTatatagtataaaaaaaaaatagaaatgtatCATTTATATATGGATTATATTGATATATCAACTATATAAAATAATTGCAGTCTAAAAACtataaaacaactttttccttttttattgttttaggggatataatttgtattctgcagatttttgtttttatacgATCATAAAGAGcaaatttattatttaaaggaaAAATCTGGGATTAGAAAACCGtggtaatttattaaataaacatttttctgtatttctttttttacatttgtcactGTAACAtctggttgtttttttccaacaagATTTCTCTCCCTAACACATGGTCAGTCATTAACCCAAGTTTATAAAGCCAGTGCATTGTGTAACACTGCTGGTTCCCACTTAATCTGACGTGGCAAAAACTCCTCACAGTGAAACAGTATCTTAATATACGTATTTCACACAGCTTTCTGTAGTTATTTGTTTTTCCTAAAAATGTACTCACTTAGACTGTATTTAGTCTTTTGTTCTGTCTCCTGTTATCCCACTGAGGTTTGTAACTCTTCGACTTTCACCTCCatgttgtttcttttcttatatatctggttttttttcttccccaaaCGGGCAAAGTGCATCTCTATGTCCTGAGTTGCCAGTCGCTGTACTCAATATTTGCATAACCATTTCAcaaaagagaataaaaagatTCTCCCAATTGTTCTTGACTGTTGCACAGTATCGGTTTGTTGTATAGTGTAGTATTATTACTCTCTATGCTGCTGCTTCTCATCGAACATTTATTGGGGAATTAAAAAGTGACATTGTCAAACGGGTGTCTTTTGATCACCTAGTTGTCCACATTTGGATCAATATCAGTCTGAAGACGGTTTCATGCAATATTGGAGTATAATTTAATAAAACTGGATGTCTGGAAATATATCTGTATCTTATCATTGCAATAAAAATATAGAAAGCGCA

Function

symbol description
sec62 Predicted to be involved in posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within protein transport. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human SEC62 (SEC62 homolog, preprotein translocation factor).

NR:

description
PREDICTED: translocation protein SEC62

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815327.1 True 3878 mRNA 0.43 8 18628974 18646415

Neighbor

gene id symbol gene type direction distance location
gpr160 NA coding downstream 24184 18603307 ~ 18604790 (-)
phc3 NA coding downstream 107951 18508455 ~ 18521023 (-)
LOC120569106 NA coding downstream 322357 18300412 ~ 18306617 (-)
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding downstream 384716 18236790 ~ 18244258 (-)
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding downstream 453648 18171649 ~ 18175326 (-)
samd7 samd7,LOC102781561 coding upstream 666 18647081 ~ 18655196 (-)
ackr4a LOC103360849 coding upstream 190257 18836672 ~ 18841174 (-)
si:ch211-106h4.6 plxdc2,LOC103360851 coding upstream 272784 18919199 ~ 18930384 (-)
si:ch211-106h4.4 NA coding upstream 290967 18937382 ~ 18961367 (-)
LOC120568598 NA coding upstream 316840 18963255 ~ 18966775 (-)
G115851 LOC103353035 non-coding downstream 7754 18620833 ~ 18621220 (-)
G115848 NA non-coding downstream 13702 18614801 ~ 18615272 (-)
LOC120568822 NA non-coding downstream 93361 18534647 ~ 18535613 (-)
G115782 NA non-coding downstream 172972 18454033 ~ 18456002 (-)
G115738 NA non-coding downstream 243015 18378400 ~ 18385959 (-)
LOC120568692 NA non-coding upstream 16426 18662841 ~ 18663776 (-)
G115867 NA non-coding upstream 37191 18683606 ~ 18684244 (-)
G115868 NA non-coding upstream 42814 18689229 ~ 18691179 (-)
G115917 NA non-coding upstream 188109 18834524 ~ 18834763 (-)
LOC120568670 NA non-coding upstream 201648 18848063 ~ 18849606 (-)
sppl2 sppl2b other downstream 134486 18480670 ~ 18494488 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 570815 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 1520070 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1583912 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1817056 16756331 ~ 16811918 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 56649 18703064 ~ 18720587 (-)
G115941 NA other upstream 198490 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 285559 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 575376 19221791 ~ 19222726 (-)
G116138 NA other upstream 818285 19464700 ~ 19465380 (-)

Expression


Co-expression Network