arf1 (arf1)


Basic Information

Item Value
gene id arf1
gene name arf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21192298 ~ 21195757 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815365.1
GGGGCGACATCTTCCAGCCTGATGCTCACGGAAGTTTAGCTGGAACGGAAACTCTGACGTGTCAAATTGTCGCCATTTTCCTGAGGAAGGAAACGCCTTGAGGAAGGAAACATATCAACTGTTTTTTTTGCCAAAGTAGGTTCCCATCACCAGCCGCCATGGGGAATATGTTTGCATCGCTCTTTAATATGTGGAAGAAGGAGATGAGGATCCTCATGGTCGGTCTGGATGCTGCTGGAAAGACGACTATTTTGTACAAGCTGAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGgTTTTAATGTAGAGACAGTAGAGTACAAGAACATCAGTTTTACAGTATGGGATGTCGGTGGTCAAGACAAAATCCGACCGCTGTGGCGTCATTACTTCCAGAACACACAGGGTCTCATCTTTGTTGTAGACAGCAACGACAGAGAGCGATGTCAGGAGGCTCGTGAAGAGCTCTCAAGAATGTTGGCAGAGGACGAGTTGCGTGATGCCGTGCTATTAGTGTTTGCCAACAAACAAGACCTTCCAAACGCTATGAATGCAGCAGAACTCACAGACAAGTTGAATCTTCACAACCTACGCGGCAGAAACTGGTACATCCAGGCAACCTGTGCCACCACAGGGGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAGTCAGCTCAAAAACCATTAATAATCACCTGCTATCTACAACTAATCTACTCCACCCAATCTCTGACCTTGCTCTTTATTCTAAAGGTGTTGCAAAACTGAGTTACCCTCTCCTAAAAAAATGTACTGGAAGATGCCCTCGCCTCAGCTGTTATTATCACAAACATACAGGCCAGTGGTGGAGATGATCTGTTCTTGTAAAGCTGTTAggtttttctattttattttatgtaactgtaaatatatttggtAATGGGGCAGCTTATTGCACTCTTACAAATCCTACCGTGGTTATTTCTCTTTCTGGCTGTTGGGCAGCCATGTGTCCACTGAATAAGAAAAGGGAGGTGAGGAATACGAATTTACCAGCACATTTGCCCAGGACCTCAATGCAATCTGATGACTTGTCATTATCTGGTCACATGTACTGTAGGGAGTGATCCATGAGGGGcttataattataaaaaaaactgaattaaacACTGATGCACTACTTGCAGCTACTGTGGTTACTTTAACCAGTGACTTCATGTACCAGCCCCCCAAATTTGTGTTCTTAAACACTGGCATTGACTATTTGTACTCTGTACTGACATCACTTTGTCCAAGTTGAGAACTCCTGTCTGTGAACATTTACCAGCCTttgttatacagtatgttggctTGAATTGAGAAATGCTGCAGCAATCTCACATCTGTGTTTCATGGTTGTTTGAAAGGCAGGCTGTCGAGTCAGCATTGGGTGTTTGTATTTCTAAGTCTCAGGTTTATCATGTGCTGCCTTTGCAATATACTTGTTAGCAAAATTGCATGATGTGGTCTGTTGGTCTTTAGGGACATGCAAACTTACTGGGTGTTTACATCATTAGGCTGCACAGGAACTATTACTCCACTGAGTACTTATTTCAACAGCCCTATACTGTAATTCTGTGTACTGGTAGGTTATTGTAACAAAAGGAGTTGCACACTACAATGGCCCTACTGTCTTCACTAAAGGCTCTGGCAAgtcatgccttttttttattcagttatCAAATCTGGGAAATTGCATTTTGATTTTAATGCAAAATCAGTTTCAGCTACATGTTTAGTGTAGTGCCAGTATTTCTTCCTTTGCAGTACAGCATTGTGCTTGGGTTAACACAtgttgccttttattttcaagCTTTTTTTCTACGTGTTATTTTACTGCTCTGAACATGTCTTGAGGGTGCATCAAACATTTTTGTCTTTGATTTATATCAACCTAAATATTTGGAAACTGTTAATCTCTTACTtaagtttgtctgtttttaatgtaaagcatttgttttgtgagaaaaaaaagcacTGTAATTAAAGTGACTGGATAAAAACTG
>XM_039815366.1
AACATATCAACTGTGTAATTTTTTTGCCAAAGTAGGTTCCCATCACCAGCCGCCATGGGGAATATGTTTGCATCGCTCTTTAATATGTGGAAGAAGGAGATGAGGATCCTCATGGTCGGTCTGGATGCTGCTGGAAAGACGACTATTTTGTACAAGCTGAAACTTGGAGAGATTGTGACTACCATTCCCACAATAGgTTTTAATGTAGAGACAGTAGAGTACAAGAACATCAGTTTTACAGTATGGGATGTCGGTGGTCAAGACAAAATCCGACCGCTGTGGCGTCATTACTTCCAGAACACACAGGGTCTCATCTTTGTTGTAGACAGCAACGACAGAGAGCGATGTCAGGAGGCTCGTGAAGAGCTCTCAAGAATGTTGGCAGAGGACGAGTTGCGTGATGCCGTGCTATTAGTGTTTGCCAACAAACAAGACCTTCCAAACGCTATGAATGCAGCAGAACTCACAGACAAGTTGAATCTTCACAACCTACGCGGCAGAAACTGGTACATCCAGGCAACCTGTGCCACCACAGGGGATGGCCTCTACGAAGGACTGGATTGGTTGTCTAGTCAGCTCAAAAACCATTAATAATCACCTGCTATCTACAACTAATCTACTCCACCCAATCTCTGACCTTGCTCTTTATTCTAAAGGTGTTGCAAAACTGAGTTACCCTCTCCTAAAAAAATGTACTGGAAGATGCCCTCGCCTCAGCTGTTATTATCACAAACATACAGGCCAGTGGTGGAGATGATCTGTTCTTGTAAAGCTGTTAggtttttctattttattttatgtaactgtaaatatatttggtAATGGGGCAGCTTATTGCACTCTTACAAATCCTACCGTGGTTATTTCTCTTTCTGGCTGTTGGGCAGCCATGTGTCCACTGAATAAGAAAAGGGAGGTGAGGAATACGAATTTACCAGCACATTTGCCCAGGACCTCAATGCAATCTGATGACTTGTCATTATCTGGTCACATGTACTGTAGGGAGTGATCCATGAGGGGcttataattataaaaaaaactgaattaaacACTGATGCACTACTTGCAGCTACTGTGGTTACTTTAACCAGTGACTTCATGTACCAGCCCCCCAAATTTGTGTTCTTAAACACTGGCATTGACTATTTGTACTCTGTACTGACATCACTTTGTCCAAGTTGAGAACTCCTGTCTGTGAACATTTACCAGCCTttgttatacagtatgttggctTGAATTGAGAAATGCTGCAGCAATCTCACATCTGTGTTTCATGGTTGTTTGAAAGGCAGGCTGTCGAGTCAGCATTGGGTGTTTGTATTTCTAAGTCTCAGGTTTATCATGTGCTGCCTTTGCAATATACTTGTTAGCAAAATTGCATGATGTGGTCTGTTGGTCTTTAGGGACATGCAAACTTACTGGGTGTTTACATCATTAGGCTGCACAGGAACTATTACTCCACTGAGTACTTATTTCAACAGCCCTATACTGTAATTCTGTGTACTGGTAGGTTATTGTAACAAAAGGAGTTGCACACTACAATGGCCCTACTGTCTTCACTAAAGGCTCTGGCAAgtcatgccttttttttattcagttatCAAATCTGGGAAATTGCATTTTGATTTTAATGCAAAATCAGTTTCAGCTACATGTTTAGTGTAGTGCCAGTATTTCTTCCTTTGCAGTACAGCATTGTGCTTGGGTTAACACAtgttgccttttattttcaagCTTTTTTTCTACGTGTTATTTTACTGCTCTGAACATGTCTTGAGGGTGCATCAAACATTTTTGTCTTTGATTTATATCAACCTAAATATTTGGAAACTGTTAATCTCTTACTtaagtttgtctgtttttaatgtaaagcatttgttttgtgagaaaaaaaagcacTGTAATTAAAGTGACTGGATAAAAACTG

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).

NR:

description
ADP-ribosylation factor 1 isoform X3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815365.1 True 2031 mRNA 0.41 5 21192298 21195757
XM_039815366.1 False 1927 mRNA 0.41 5 21192406 21195757

Neighbor

gene id symbol gene type direction distance location
wnt3a wnt3a coding upstream 13467 21163720 ~ 21178831 (+)
snap47 snap47 coding upstream 132548 21053381 ~ 21059750 (+)
iba57 iba57 coding upstream 140956 21048354 ~ 21051342 (+)
gjc2 gjc2 coding upstream 146734 21026500 ~ 21045564 (+)
LOC120567629 NA coding upstream 172973 21016902 ~ 21019325 (+)
guk1a guk1,LOC107100458 coding downstream 4960 21200717 ~ 21208684 (+)
abcb8 abcb8,LOC103375355,LOC102789860 coding downstream 89395 21285152 ~ 21290501 (+)
cdk5 cdk5,LOC106599847 coding downstream 95949 21291706 ~ 21298333 (+)
zgc:92591 LOC103479695,LOC101468538,LOC101063387,LOC100696317,LOC105935710,LOC106963471,LOC103358166 coding downstream 232262 21428019 ~ 21428679 (+)
asb10 asb10 coding downstream 239210 21434967 ~ 21439933 (+)
G116583 wnt9a non-coding upstream 58286 21129608 ~ 21134012 (+)
G116538 NA non-coding upstream 161802 21021631 ~ 21030496 (+)
G116529 NA non-coding upstream 163316 20949004 ~ 21028982 (+)
G116514 NA non-coding upstream 311302 20880692 ~ 20880996 (+)
G116507 NA non-coding upstream 364063 20827876 ~ 20828235 (+)
G116616 NA non-coding downstream 47884 21243641 ~ 21244393 (+)
G116657 NA non-coding downstream 74994 21270751 ~ 21326263 (+)
G116723 NA non-coding downstream 258573 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 418343 21614100 ~ 21662470 (+)
G116794 mapre2 non-coding downstream 638709 21834466 ~ 21838752 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 276976 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 816665 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1726917 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2140056 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2466851 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 675196 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1412292 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1445753 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2237868 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2396975 23592732 ~ 23685804 (+)

Expression


Co-expression Network