XLOC_004733 (CR932077.1)


Basic Information

Item Value
gene id XLOC_004733
gene name CR932077.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25312018 ~ 25430371 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009376
GTAGATTTTACCTGAGTAATGCAATAGATTTTCGTATTTTTCCCCTCTGAAACTTTGTGGAAAAGCTGAACTCCCTCTCATCCCGCATATTATTGTGGTTCAGAGATGAAAACGTCAAATGAAAGCGTACCACAATTGCATCCACAAGTTTCAGAGTCCACAGTTTCAGAGGCCCGAGGCTTGGATGCCATGTACCCCATTCATCATTAGCAACATTTATCAAGCAAGACAGCAGATGGTggtaaaaatgggcTGGCACAGCGTAATGAAaaaccaactcatccagcaaatgttttacgcagtggatgcccttccagctgcaaccaatcaaaGCCGCGCCgcgccgaggcttgaaccagcgaccttcttactgtgaggcgacatcgctacccactgcgctaccgtgcCGCCCTCATGAGACATCCAGGCATCTTTCTTCATCCTACAGCAGGAGGCCTGGTTTAATGATTGCATGTGAACATCCTATTTCCAGTCAGGAGGAACAGAAACACTATTCTCTCTCATCAGCCTAGCGCTCAAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGGTGTTTTCCTGAGATGAGCTCCGGCATCCCTGTGACAGGAGCAAGGGGTTTGGGAACAGGACGGATGGATGTCATGTGTAGAaacacagcgccccctgctgaacACATAAAAAGCTGTGACTGTCCAAAAGCTGGAAAAAGCTGCCTTCAAAGGATACATTTCAAGatCCCTACAGAACTCAAACCCCGTCATtatggtcaactctgctctgtgtCTCAAATCCTTCGACGTATgcagcgagccactggacaaactggtaacagcggaaaagccatctaCACA
>TCONS_00010938
GCTGAAGCCCCGCCTTTCCCGTCACGTGGTGTCCGTCAGATCGTCACTGCCCCTTCCAGACTTGAAGAGCTCTAGTGCGCACTCGCTGCCTGCGTGCTTCAAGGAAATCAACAGTGCATAAATTAAACTCAGGTGCTTGAAACCGGATTCTCCTTCAGCAGGATTCCTTTTTAAGGCCGAATTTTAAATAGTATCTCCATCTAAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGGTGTTTTCCTGAGATGAGCTCCGGCATCCCTGTGACAGGAGCAAGGGGTTTGGGAACAGGACGGATGGATGTCATGTGTAGAaacacagcgccccctgctgaacACATAAAAAGCTGTGACTGTCCAAAAGCTGGAAAAAGCTGCCTTCAAAGGATACATTTCAAGatCCCTACAGAACTCAAACCCCGTCATtatggtcaactctgctctgtgtCTCAAATCCTTCGACGTATgcagcgagccactggacaaactggtaacagcggaaaagccatctaCACAGAGCATGACGTGGAGAGTTCAACTGGTGGATCAGTAAGAAGAACTGACGCACAACACTTTTAGAAAAGCTGAAAAAAGAGGACCAGACCTGAAGTTCTGGAGAAAGATCAAAAGAAAATCACATACTGTATTTGGTTATAGCTTGGACTCGTAACTCTTTAAGGACTGACATCAGTCTGACACTTTCATCATATGACATTCATCATGCTCAAAAGCTGTTCTAATTGGTCATAAATGCATTTTACTTAGTTGGATAAAGAATAAAGCCTCTTTGATGCCCAGAATTCACATAAAATTGAATTAAGATCTTTTCGAATAAATTTACAGtctttttttaggtgaacttaGGTGAAAAGTTGAGTTCATAAAAAATATGGCAgtgtgcactacctgacaaatgtcctatcacctatccaagttttaggaataataacttcagaagtggcttatttttaccaaaataaaatatgaacatgccttgattttaaattatatagttagaacagtaaggcctgactttgcttagaaaaaagtcctgtcatttaacaaaaataatgtacagtagaatataaagtcatggttctGTGGAAAAatgattaatattgtgtatgactcctttaagcttggaggactgcaacCATGcatcttattaataaagtcatctggaatggcaaag
>TCONS_00010740
GCCCCTTCCAGACTTGAAGAGCTCTAGTGCGCACTCGCTGCCTGCGTGCTTCAAGGAAATCAACAGTGCATAAATTAAACTCAGGTGCTTGAAACCGGATTCTCCTTCAGCAGGATTCCTTTTTAAGGCCGAATTTTAAATAGTATCTCCATCTAAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGTAGTGAAATTACATATCAATCTAAACAAACCTGAGTGTTAATTAGTCTGAAGGTTTTGTGAGAAATAATATGCAATTATGATTCtcatgtttgttattttaacgtctgaatattatattactatattttCTGCAAATCAAATTGTTAGGTGAGTGAGGGGGCCTCCTGTAACTTGCAGGACCCTACACACCTATGCATAGTCCGCGTGTAGGGTAGAGAGGTAACGGAAGAGGGAGATGCGCAAATAGCATATTATGGAACTAAGGCAAGATGCACATATCAATCTTGCCATAGTCTGTCAGATAACCAACAGTACAAAATTGGTTAAACTGATAACGATTAATCTTTCTTGTCTGCATCGTAATGCACTGTACAAAACTGTTATCTCACTTACTTTTAATGAGCAATTGCACTCCCAAAGAGTGAGCTCATGCATCCAAAAACCACTGCATGCTAATTGCGTTTTTTCTACATTTTCTGAGCTCCAAATAAACGATTATGTATgaaaaaaggcccacagtggGCCCATTTAAGTGTGCTTTTAAAGCCCCCAGTGGCTTCTTTTCTTTTAAAC
>TCONS_00010939
CACTCGCTGCCTGCGTGCTTCAAGGAAATCAACAGTGCATAAATTAAACTCAGGTGCTTGAAACCGGATTCTCCTTCAGCAGGATTCCTTTTTAAGGCCGAATTTTAAATAGTATCTCCATCTAAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGGTGTTTTCCTGAGATGAGCTCCGGCATCCCTGTGACAGGAGCAAGGGGTTTGGGAACAGGACGGATGGATGTCATGTGTAGAaacacagcgccccctgctgaacACATAAAAAGCTGTGACTGTCCAAAAGCTGGAAAAAGCTGCCTTCAAAGGATACATTTCAAGgttctttgccggactcaaaccccatcatcatTGTCAGCTCTGCTTTGTGTCTCAAATCTTCTGACGTACGTGGCGAGACACTGTACATAATGGTAAAAGCAGAAAAGCCATCC
>TCONS_00010741
GAAAAATAAAACTCTCAAACAAAACTCTGTCCACAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGTAGTGAAATTACATATCAATCTAAACAAACCTGAGTGTTAATTAGTCTGAAGGTTTTGTGAGAAATAATATGCAATTATGATTCtcatgtttgttattttaacgtctgaatattatattactatattttCTGCAAATCAAATTGTTAGGTGAGTGAGGGGGCCTCCTGTAACTTGCAGGACCCTACACACCTATGCATAGTCCGCGTGTAGGGTAGAGAGGTAACGGAAGAGGGAGATGCGCAAATAGCATATTATGGAACTAAGGCAAGATGCACATATCAATCTTGCCATAGTCTGTCAGATAACCAACAGTACAAAATTGGTTAAACTGATAACGATTAATCTTTCTTGTCTGCATCGTAATGCACTGTACAAAACTGTTATCTCACTTACTTTTAATGAGCAATTGCACTCCCAAAGAGTGAGCTCATGCATCCAAAAACCACTGCATGCTAATTGCGTTTTTTCTACATTTTCTGAGCTCCAAATAAACGATTATGTATgaaaaaaggcccacagtggGCCCATTTAAGTGTGCTTTTAAAGCCCCCAGTGGCTTCTTTTCTTTTAAACCCCATTTCACAAAGTTGCACACTATTTCCACGAAACATGTCATTCAACTTGGAAAACTTAGCAAAATGTTGTGAGCCAGTCTGAGTTTGAAAGTGACCCAGGCCTACATGAGTGGCCAGACGGATGTCTCTTCTCAGTAAAAGACAGTTGACAGCTCATCTGGAGTTTGCCAAAGAGACACTTGCAGAATTCACAGACCATGAGAAACAATATTCTGTGGTCTGACGAAACAAAGATTGAACCCTCTGTCTGGAGGAAATCAGACACCGATCATCACCTAGCCAATACATCTCCACACTGAGCATGGCGGTGGCCGTATCAGGCTGGGGGTGTTTTCAGCATTAGGAACTGGGAAACCAGTAATAATCGAAGGAaatatgaatgcagcaatgtgcaGAGACAAATTTAATGAAAAGCTGCTGCAAGGTACTCTGGACTTTAAAACTGGAATAATGGTTCATCTTACAACTGCACAACAACCCTAAGCACACAGCCAAGATGGCAATGGGACAACTCTGCGAATGTCCTTGAGTGTCCCAGCCAGAACCCAGACTTTAAccatattgaacatctctggtAAGATCTGAAATTGGATGTGCATCGATGCTTCCCTTCCAAAAATAGTTGTGCCTAGATTGTAACTTGTAGCACTTAAAAAGACGAGGCTGTAATTGGTGCTGAAAGGCTTCAGCAAGGAACTGAGTAAAAGTTGTAAATACTTATGcgtgtgttatttttttatatatctaaacCTAATAACTGGTTTGGCCACCCATAGCAGGAACAAATGCAATCAAGCATTTTCAATAACTTGCAATGAGTCTGTTACAGCACTGTGAAGGAATTTTAACCCACttatctttgcagaattgttgtaattcagccacattggagggtTTTTGAACATTATCCACCTTTTTAAGATCATGCCAcagctcaattggattcaggttagggctttgactaggccactccaaaatcttcattttgtttttttcagccattcagaagtggacttgctaatgaggatcattgtcctgctgcagaacccaagttCGTTTCAGTTTGAGGGCACTAACAGATGACATTCTCTTTCAGGATGATTTGGTAAAGAGCATAATGGTTTAATTTATCACAGTATGTTCTCCAGGTCCTGAAGCAGCAATTCAACACCAGACCATCACATTACCATCACCACCACATTTTACTGTTGGTATGATTCTCTTTTTCTGAAATGGGGTGTTACTTTTGCTCCAAACAAAATGGGACACACATCTTCCAAAAGTTCAACTTTTCTGTTGTCAGTCCATGGAGTATTTTCCTAAGAGTCTTGGGGGTTATCAATATGCTTTTTTTGGCAAAACTGACACAAGCTTTTATGTTCTTTTTGGTCAGCACTGATTTTTGTCTTGGAACTCTGCCCATGCAAACCATTTTTGCCCAGTTGTTCTTATgctggagtcatgaacactcaccttaactGAGGCAAGTGAGGCCTGCAGTTCTTTGGATGTTGTTTGTGGTCCCTTGAATGAGTTGTAGCTGCACTCTTGGGGTAATTTTGGTCGGATGGCCACTCCTGGGAAGGTTCTCCACTGTTCCATGTTTTTGCCATTTGTAGATAATGGCTCTCACTGTGGTTCGCTGCAGTCCCAAAGCTTTAGAAATTGCTTTATAACCTCTTCCAGACTGTTGAATCTCACCACTGTTGAAttgttttctttctcatttgtgtttgaatttctttggatattggcatgatgtctagcttttgaggacCTTGCTCTACTTCACTTTGTCGGACAGGTCTTATTTAAGTAATTGTGAACAGGTGTGGCAGTAATCTGGCCTGGGTGTGGCTAGGGAAATTGAACACAGTGTGATAAACCAGAGTTATGTTTTAATTAACACAATTTTTCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009376 False 1306 lncRNA 0.50 9 25312018 25420721
TCONS_00010938 False 1646 lncRNA 0.44 6 25380089 25430371
TCONS_00010740 False 1213 lncRNA 0.45 3 25380137 25387670
TCONS_00010939 False 887 lncRNA 0.50 5 25380168 25408520
TCONS_00010741 True 3013 lncRNA 0.42 2 25382277 25389591

Neighbor

gene id symbol gene type direction distance location
XLOC_004732 mta3 coding upstream 27508 25223799 ~ 25284510 (+)
XLOC_004731 CR848736.1 coding upstream 97291 25201543 ~ 25214727 (+)
XLOC_004730 pigf coding upstream 201044 25097754 ~ 25110974 (+)
XLOC_004729 gch2 coding upstream 219448 25085751 ~ 25092570 (+)
XLOC_004728 CR385067.1 coding upstream 236898 25073305 ~ 25075120 (+)
XLOC_004734 ppm1bb coding downstream 2255 25432626 ~ 25487244 (+)
XLOC_004735 NA coding downstream 72035 25502406 ~ 25504380 (+)
XLOC_004736 six3b coding downstream 170314 25600685 ~ 25603341 (+)
XLOC_004737 prkcea coding downstream 210109 25640480 ~ 25770232 (+)
XLOC_004738 CR932018.1 coding downstream 217756 25648127 ~ 25648243 (+)
XLOC_004726 NA non-coding upstream 367514 24944172 ~ 24944504 (+)
XLOC_004724 BX255907.1 non-coding upstream 746426 24565478 ~ 24565592 (+)
XLOC_004723 BX255907.2 non-coding upstream 893678 24418224 ~ 24418340 (+)
XLOC_004744 NA non-coding downstream 1058982 26489353 ~ 26491973 (+)
XLOC_004748 NA non-coding downstream 1159273 26589644 ~ 26593298 (+)
XLOC_004751 NA non-coding downstream 1261448 26691819 ~ 26692051 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G398678 NA unknown CI01000246 null 63188 ~ 63620 (+)
rainbow trout (Oncorhynchus mykiss) G87090 NA unknown NC_048565.1 CM023219.2 77478603 ~ 77479939 (-)
striped catfish (Pangasianodon hypophthalmus) G164137 NA non-coding NC_047604.1 CM018550.1 12384927 ~ 12387390 (-)
mexican tetra (Astyanax mexicanus) G58977 NA non-coding NC_035902.1 CM008305.1 45195151 ~ 45506402 (-)