LOC120568131 (otol1,LOC104951468)


Basic Information

Item Value
gene id LOC120568131
gene name otol1,LOC104951468
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24936959 ~ 24939879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815412.1
TCGTGTGTAACCATATATTTCCGCTGTTTGTGTACAAAGCAAGCATGTGTGCGAACAACACTTAAGCTGTGTGTGCACTCATGGGCCTTGGAATCTTATCCCATATCACAAAGAATAAAGTCTTGCCTTGTATACAACCTGCTTTATTTCACATCCCTCAGGAGTCATATAATCTGTTCTTTCCAGCCCACCTACCTCATAATAACCCCCGGTGTTCTTTCCCTTGTTCTCTATTCGGGCTACCGGGCCAATATAAGGAAGCAGGCAGCCTACATCAATCAGTAGTTGGAGCGGATGGAGTGAAAAGTCAACGCCATTTCCATCAGCAGCTTATTGTAGCCCTCAGTATGCCTTTCGTTCGCTTAGTTTTCCTGACCACTGTCCTTGTGGTACTGATGGCCGTGCTGGCCTCCAGTGCCCGAACCACACGCTGGCCCAAACCTCAGACCACCAAGAAGCCCCCTCGAGCTGGGAGCAGCGGTGGACGGACCACCACCACGACCCCATCCCCTTCCAGCAGCGTGCACACAGATGAGACAACTGAGGTTACGACGGGCGCTTACTCCCTGTCCCCTACAGACAGCACCACCTACTCCAGTGACACGTTCTCCACTGAGTTCCACACCGATGCCGTAGTGCCCCCCGGGAACGCCCTTGGAAACTATACCCTTGACTACAATGAATGCTTCTTCAACTTCTGTGAGTGCTGTCCGCCAGAGAAAGGCCCCGTAGGgcccatgggagagagagggccACCGGGACCACAAGGAGAGAGGGGCCCGCTAGGGTTACCAGGAGAGAAGGGAGACACAGGACTCAGAGGACTTCCAGGACCAGCAGGACTACCTGGAGCCAATGGACTCAATGGCGACATAGGTGACAAAGGTGATCAAGGACCCATGGGTCTTCCTGGTGCACCTGGGATCCCGGGAAAACCAGGAGAGAAAGGTGATCCGGGCCCCAGAGGAGAGAAAGGCGAACGTGGCTTCAGTCTGAAAGGGGACCcgggagaaagaggagagccTGGCCTGAATGGGACTAAGGGCAGCACCGGGCCTATGGGTCCCCCTGGGTTAGCTGGGACAAAGGGTCCGAAAGGTGAACAGGGACCTATAGGCGACTGTTTACCAGGCGAGAAAGGGGATGTGGGTGAGCGTGGGCCCCCTGGTCCGAGAGGTGAGATGGGCCCCCCAGGAGTAAATGGAACTGATGGTGccaagggagagagaggggagccAGGGCCTCCGGGAGGGAAGGGGGATAACGGTGCCAGAGGGCCCCCAGGACTTCCGGGAGGGAGGGGCATAGCAGGGCTGAGAGGAGAAAGGGGAGCCAAAGGTGGGCGTGGGCCCCGGGGCCCTAAAGGCCCACCAGGTGAGAGTGTGGAGCAGATTCGCTCTGCCTTCAGTGTGGGCTTGTTCCCCAGCAGGTCCTTCCCTCCGCCCGGCCTACCTGTGAAGTTTGATAAGGTGTTTTACAACGGGGAGGGGCACTGGGACCCAACAATCAACAAGTTCAACGCCACATACCCGGGGGTCTACTTATTCAGTTACCACATCACCGTGCGCAACCGGCCCGTACGTGCTGCCCTAGTGGTTAACGGGGTACGGAAGCTGCGGACTCGAGATTCTCTGTACGGCCAGGACATCGATCAGGCGTCCAACCTCGTGCTGATGCATCTGACTGAAGGCGACCAGGTGTGGCTGGAGACGCTGAGAGACTGGAATGGAGTTTACTCCAGCAGTGAGGATGACAGCACTTTCTCTGGCTTCTTGCTTTACCCAGACCCGAAGAACAAACCTACTGACGTGGAAAACTTGTGACTGCAACCTTTGTCCTTTAATCAGCCATGAGTGTAACTTCTTGTAGACACTGCACAACCTTCAGCCTATTGCACTGCCCTGTCAAATTATCTTGTGATTCAGCTACATGCATCTGCTTCGGTATCTGCTCACTGCTGTCGTGCTAATCAAACCAAATGCTTTGCCTGCCTTGCTATATTTGGAGATGGATGAGGCTTGATTATACTGCTGTATGTAACACTTCAG

Function

symbol description
otol1 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including collagen-activated tyrosine kinase receptor signaling pathway; otolith mineralization; and protein homooligomerization. Predicted to be located in extracellular region. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
PREDICTED: otolin-1

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24214 OTOL1; otolin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815412.1 True 2048 mRNA 0.55 5 24936959 24939879

Neighbor

gene id symbol gene type direction distance location
LOC120568308 NA coding upstream 25624 24907837 ~ 24911335 (+)
zgc:153615 schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499 coding upstream 30013 24894555 ~ 24906946 (+)
LOC120568221 NA coding upstream 44520 24887761 ~ 24892439 (+)
LOC120568223 NA coding upstream 60000 24875001 ~ 24876959 (+)
kif2c kif2c,LOC101470919 coding upstream 75014 24853794 ~ 24861945 (+)
rc3h1b rc3h1 coding downstream 25786 24965665 ~ 24980880 (+)
extl2 extl2 coding downstream 52265 24992144 ~ 24996202 (+)
LOC120568127 NA coding downstream 146095 25085974 ~ 25113802 (+)
gpc5c LOC103359185,LOC104919215 coding downstream 200858 25140737 ~ 25262341 (+)
LOC120568394 LOC103359187 coding downstream 341425 25281304 ~ 25353783 (+)
G117632 NA non-coding upstream 98730 24837956 ~ 24838229 (+)
G117547 NA non-coding upstream 380302 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 597703 24337693 ~ 24339256 (+)
G117523 NA non-coding upstream 678128 24257554 ~ 24258831 (+)
G117488 NA non-coding upstream 767006 24169668 ~ 24169953 (+)
G117704 NA non-coding downstream 178352 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 185952 25125831 ~ 25130929 (+)
LOC120568901 NA non-coding downstream 842296 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 932450 25872329 ~ 25873402 (+)
LOC120568898 NA non-coding downstream 940625 25880504 ~ 25888841 (+)
selenot1a selenot,LOC103365166 other upstream 66872 24862996 ~ 24870087 (+)
LOC120569045 cacybp other upstream 261205 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 358647 24569528 ~ 24578312 (+)
LOC120569114 NA other upstream 882255 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 913300 24022441 ~ 24023659 (+)
G117664 NA other downstream 10689 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 47620 24987499 ~ 25044057 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 803448 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 833898 25773777 ~ 25793954 (+)
G117829 NA other downstream 889885 25829764 ~ 25830695 (+)

Expression


Co-expression Network