extl2 (extl2)


Basic Information

Item Value
gene id extl2
gene name extl2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24992144 ~ 24996202 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815415.1
ATGTTAGAATGGCAGAGCTCTTTTCCTTTAGGCTCTTTAGTTAGAGTTAGCCAACATGGCGACCGTGTAACGTTAAAGCAAACCAATACATCCATGAAGCAAACGGACTATGAGTGCCAACAAAATGAGGGTCCCCCGATGCTGCATGGGGCTCCGGCGAGCCTATTTGGTTTGGCCAATCCTGCTGCTACTCCTGGTTGGTGCAGCTTTGACCGCTCTGCTGCCCCCTGCTGAGGACCGAGGAGGTGTTGGTGGCGGTGACCTAGGAGTGGTGCGTGAGGCAACgtcacaaaaaaataatcccACACAGGACCACCATAGTGACAGCATAGAGGAAGAGCACAGGTTCACCATCATCATCCAAACTTACAACCGCACAGACATTTTGCTCAAACTCCTAAACCATTACCAGGCAGCGCCTCATCTTCAGCAGATTATCATAGTCTGGAACAACATTGGGGAGCAGACACCCCTAAAGTTATGGAACTCTTTGGGGCCTCATCCGGTCCCTCTGGTCTTCAAGGAGCAGACTATCAATAACATGCGCAACAGactacaatcattccctgagaTTGATACTGATGCTGTGCTGATGCTGGATGACGACACCCTGGTCAGTGTTCCTGACATCAGTTTTGCTTTCTCTGTCTGGAAGCAATTTCCAGACCAGATTGTTGGGTTCGTCCCACGCAAACATGTCTCAACACCAGGAGGAGTGTACAGTTACGGCAGTTTTGAACTGCAGGACCCAGAAACAGCTGGAGGTGACAAGTACTCCATGGTGTTAGTTGGTGCTGCCTTCTTCCACCGCCGCTACCTGCAGCTCTTCCAGGACCAACCTGAAGCAGTGCATGCGCTGGTGGACGAAACACAGAATTGTGACGACATTGCCATGAACTTTGCTGTAGCGCTGTATTTGAGGAAACACTCTATAGGCAAGGTTAACAAACCCTCTGGGGTCTTTGTCAAACCTGTAGACCTCCGCAACCTGGAAAAGGACGCCAGGAGCGGGTACCAGGGTATGTGGCATCGTCCTGAACACCTTCTTCAGAGGTCCCACTGTATGAACAGGCTGACGCAGATCTATGGCTTCATGCCACTCTGCTTCTCCAACCTGATGGTCTCCCAGTTTGGCTTCCCCAGCTACGCCAACCATAAGAGTAGAGGCTGAGCTGCCACACAGCTGACTTTTTTGGATTGAAAGAAGACAGACTCAAGATTATCATGGATTTCGGACAATCACACTTTTCTACACATGGCCCAGTCTGAGGAAACGTCTATATTTGATAAGGTAATCTCTATATCATTACCAAAGCTGCCTTTCTTTCAGTGTGAACAACTCTCTCAGTGaattgttgttgtggttgttttacGACCAGCAGGTGTTGGTCTTAGATCTTTGACAATTTGCCTCGTTTGTAACCATGATTTACAGCTCTCTGATGCTgtagatttttgtttttactacATTTATAGTTGTATATGGAATGTCACTTTTCTGGTGAGCTTGTATAAATGTACTGTGTCCCCACCAAAGTGTGAATTTATAGAATAAAATACAGGTATTTTGTACATTCTAGGTAATTCCTACTATGCATGCATagacaatctttttttctttttttttataaatgtgtgcaCATTATAAAGACTGCATCATGTTAATTAGTTAAATAAAGCCAAcactttttctttgaa

Function

symbol description
extl2 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

NR:

description
exostosin-like 2 isoform X2

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K02369 EXTL2; alpha-1,4-N-acetylglucosaminyltransferase EXTL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815415.1 True 1698 mRNA 0.46 6 24992144 24996202

Neighbor

gene id symbol gene type direction distance location
rc3h1b rc3h1 coding upstream 11264 24965665 ~ 24980880 (+)
LOC120568131 otol1,LOC104951468 coding upstream 52265 24936959 ~ 24939879 (+)
LOC120568308 NA coding upstream 80809 24907837 ~ 24911335 (+)
zgc:153615 schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499 coding upstream 85198 24894555 ~ 24906946 (+)
LOC120568221 NA coding upstream 99705 24887761 ~ 24892439 (+)
LOC120568127 NA coding downstream 89772 25085974 ~ 25113802 (+)
gpc5c LOC103359185,LOC104919215 coding downstream 144535 25140737 ~ 25262341 (+)
LOC120568394 LOC103359187 coding downstream 285102 25281304 ~ 25353783 (+)
LOC120568352 ephb1,LOC103359190,LOC105935923,LOC107384019,LOC106599529,LOC106907045 coding downstream 379983 25376185 ~ 25557632 (+)
LOC120568896 NA coding downstream 811819 25808021 ~ 25811280 (+)
G117632 NA non-coding upstream 153915 24837956 ~ 24838229 (+)
G117547 NA non-coding upstream 435487 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 652888 24337693 ~ 24339256 (+)
G117523 NA non-coding upstream 733313 24257554 ~ 24258831 (+)
G117488 NA non-coding upstream 822191 24169668 ~ 24169953 (+)
G117704 NA non-coding downstream 122029 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 129629 25125831 ~ 25130929 (+)
LOC120568901 NA non-coding downstream 785973 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 876127 25872329 ~ 25873402 (+)
LOC120568898 NA non-coding downstream 884302 25880504 ~ 25888841 (+)
G117664 NA other upstream 37897 24950568 ~ 24954247 (+)
selenot1a selenot,LOC103365166 other upstream 122057 24862996 ~ 24870087 (+)
LOC120569045 cacybp other upstream 316390 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 413832 24569528 ~ 24578312 (+)
LOC120569114 NA other upstream 937440 24049764 ~ 24054704 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 747125 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 777575 25773777 ~ 25793954 (+)
G117829 NA other downstream 833562 25829764 ~ 25830695 (+)
LOC120567655 LOC103356880,LOC101482764,LOC104966182,LOC107087304 other downstream 1052587 26048789 ~ 26051099 (+)
LOC120568800 NA other downstream 1218230 26214432 ~ 26217041 (+)

Expression


Co-expression Network