lrrc42 (lrrc42)


Basic Information

Item Value
gene id lrrc42
gene name lrrc42
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17571577 ~ 17574473 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815470.1
AAATGTGATAACTTCCACTGTAGCTAGCTACGCTACAACCAGAGTGACAGCTAGAGAGACACCATAGACTGTTTATGGCTACAATAAGGAAATCAAAAAAACGCGCAAGTGGTAAACAACTTGGCTATATAAGGGGAATTAGATGAGAAACGATAGCAGATAATAATAGTCTTACTTAAAACTTTAGGGTCCTTTTGGTCTGGTCAGACAACAACCATAGCTAACTACATGTTAACTAGCAGCTAACGTTGACGTTACCTTGACTTTTTGCAATGCTTCAGGTGTCACTCTGACTAAAATAGTTACAACAGTTGTATCATTCTCACGGGAAAAGAAACGTGTGACCTTAGTATGGACAATAGCGCCATTTATGTCCGAGAAAGAGGCAACCTTCGTCGTGTCAGTGACATAGTCCTGGCACAGCCAAAGCCAGTGTCATCATGCAGAAGAACAAATCCGTTTGTGCTGAGAAAAGAGAACTTCATATTCACCTACAATGCTGAAGGAAGTCTGAGATACACCACAAAATCTCTCTTTGAAATCACTATGTTATTCGTAGCTGACAACATTAACCATGTGGACTCTCTGGTGGGCTTCCCTGAGCAAATCGGAGACAGACTttttgcagcagcagaggagaatCGTGTGTTTTTAAACGCAGACATTTCTCCAAAAGCCCTGCAGTTATTCAGTGATGCATATGGGGAAATGGTGCTTGGATCCCTCTGTCTAAGAAATAGATTTCCACTCTTACATGAGAGATTGGatgaaataaagacatttcATAGTTTGACGTCTCTGGATCTGTTTGGCTGCAGACTGGGCGATGATCATGAGATATTTCAGCATCTAACATCCAGCTCATTGGCAAGCAGCCTAATTAAGCTTTTCATTGGTGGTAACAGTCTGTCAGATGTCGGCCTACAAAGATTGACTGCACCCATCCGGATGCTGAGGAAGGGACTGGACTGTCTTCAGTTACTTGATGTTTCCTATAACCCTATATCAGTGAGGGCTCTAAGATACCTCATGTGCCTCCCCAAACTGGAAAATCTTGATGTATCTGGGACCAGTTTAAAGCTTGGCACAGGATTGAAGACAACCATGTGGGACCTATTGAGGCTCAATTATTCTGAGAAACCACTGGACACCTTTGATCATGTAAGATGTAAAACAGAAGGCTGGGCACAGCAGGTTGTAAACCAGTGGGAAACAAATAGCTCACAAATGCCAAAACAGAAGAAAATTGATGAATCCAGAGCATCAGCACTTCGCTTTTTTGGCAGGCAGAAGTTTGTCAGAGAAGTCCTGAATGCAGCACCCTTGGTATGTGAGAGCGAGGAAGagaccaagagagagagactgcatTTCTTCAGACCTGCAGCAAACCATCACATACCAGAGAAACAAACTCCTTCCACAACAAATGATCAAGCAAAGCCTGCCTGGAACAATATCAAAAAAAGGCAGCGTCAGTCGGAAAGGTGTGACAGTTCACATCAAAGTCCTCCAACAAAACGTTTGTCCTCATCAGCTCTTACTGCAGAGGACATGGACTTGTTGAATAGCTATTGAGGTATGTGTCCATGTAGCATTCCACAAATAGCAACTTGAGTATGTTGTTAAAGCTGTAACATTACGGCTCAAATGAACAAGAATATTTCCAAGATGATTTACACTGGGGAACTGTAAACACTTTTTCTAGGATATAGGTgacgtttatatatatatatatattttttttttttagaaatagaGTTTAGTATTTTGTATGTGTCCAATTTCTTGCTTGACATGGTATTTGGAAACAACCTAGATGATATGATTGTTAGACAAGTGTGCTCATCAGACCTAGTATGGCAATGCTGAAAGACCAATTACATAAATACTGGATAACTAACTAGGCAAAGCAGACAACTGCCATGAAAGGCTCCATGCTTACAGTGTGAGAACTGGTTTCAGGCTAATTTAATTGAGAATTTGTTTGTGAATATGCAGCACTGAAGCTCAAGGCCAACGAACATGATTAAGACCTCAAGTTTGTCGCCTTATTACTTAATCTTATGGCCTTGTTTTGAAGAGGGTCCATTTGCGaggtttgtgtttatatgtgtgtatatgttcttATTTTGTCCCATAATATTGTCGGTCACACAATGTCTGGTTAAGAAAGAAGAAGTATCAAAATTGTTGGGCTTATTTTTATTCCAAACAATCTTCTTCCATGACAAATCTTGgcacctacattacccacaatgcaacttgaaCACTTAACATTTCGATCGGAAATTCCGGTG
>XM_039815471.1
CAAATGTGATAACTTCCACTGTAGCTAGCTACGCTACAACCAGAGTGACAGCTAGAGAGACACCATAGACTGTTTATGGCTACAATAAGGAAATCAAAAAAACGCGCAAGTGGTAAACAACTTGGCTATATAAGGGGAATTAGATGAGAAACGATAGCAGATAATAATAGTCTTACTTAAAACTTTAGGGTCCTTTTGGTCTGGTCAGACAACAACCATAGCTAACTACATGTTAACTAGCAGCTAACGTTGACGTTACCTTGACTTTTTGCAATGCTTCAGGTGTCACTCTGACTAAAATAGTTACAACAGTTGTATCATTCTCACGGGAAAAGAAACGTGTGACCTTAGTATGGACAATAGCGCCATTTATGTCCGAGAAAGAGGCAACCTTCGTCGTGTCAGTGACATAGTCCTGGCACAGCCAAAGCCAGTGTCATCATGCAGAAGAACAAATCCGTTTGTGCTGAGAAAAGAGAACTTCATATTCACCTACAATGCTGAAGGAAGTCTGAGATACACCACAAAATCTCTCTTTGAAATCACTATGTTATTCGTAGCTGACAACATTAACCATGTGGACTCTCTGGTGGGCTTCCCTGAGCAAATCGGAGACAGACTttttgcagcagcagaggagaatCGTGTGTTTTTAAACGCAGACATTTCTCCAAAAGCCCTGCAGTTATTCAGTGATGCATATGGGGAAATGGTGCTTGGATCCCTCTGTCTAAGAAATAGATTTCCACTCTTACATGAGAGATTGGatgaaataaagacatttcATAGTTTGACGTCTCTGGATCTGTTTGGCTGCAGACTGGGCGATGATCATGAGATATTTCAGCATCTAACATCCAGCTCATTGGCAAGCCTAATTAAGCTTTTCATTGGTGGTAACAGTCTGTCAGATGTCGGCCTACAAAGATTGACTGCACCCATCCGGATGCTGAGGAAGGGACTGGACTGTCTTCAGTTACTTGATGTTTCCTATAACCCTATATCAGTGAGGGCTCTAAGATACCTCATGTGCCTCCCCAAACTGGAAAATCTTGATGTATCTGGGACCAGTTTAAAGCTTGGCACAGGATTGAAGACAACCATGTGGGACCTATTGAGGCTCAATTATTCTGAGAAACCACTGGACACCTTTGATCATGTAAGATGTAAAACAGAAGGCTGGGCACAGCAGGTTGTAAACCAGTGGGAAACAAATAGCTCACAAATGCCAAAACAGAAGAAAATTGATGAATCCAGAGCATCAGCACTTCGCTTTTTTGGCAGGCAGAAGTTTGTCAGAGAAGTCCTGAATGCAGCACCCTTGGTATGTGAGAGCGAGGAAGagaccaagagagagagactgcatTTCTTCAGACCTGCAGCAAACCATCACATACCAGAGAAACAAACTCCTTCCACAACAAATGATCAAGCAAAGCCTGCCTGGAACAATATCAAAAAAAGGCAGCGTCAGTCGGAAAGGTGTGACAGTTCACATCAAAGTCCTCCAACAAAACGTTTGTCCTCATCAGCTCTTACTGCAGAGGACATGGACTTGTTGAATAGCTATTGAGGTATGTGTCCATGTAGCATTCCACAAATAGCAACTTGAGTATGTTGTTAAAGCTGTAACATTACGGCTCAAATGAACAAGAATATTTCCAAGATGATTTACACTGGGGAACTGTAAACACTTTTTCTAGGATATAGGTgacgtttatatatatatatatattttttttttttagaaatagaGTTTAGTATTTTGTATGTGTCCAATTTCTTGCTTGACATGGTATTTGGAAACAACCTAGATGATATGATTGTTAGACAAGTGTGCTCATCAGACCTAGTATGGCAATGCTGAAAGACCAATTACATAAATACTGGATAACTAACTAGGCAAAGCAGACAACTGCCATGAAAGGCTCCATGCTTACAGTGTGAGAACTGGTTTCAGGCTAATTTAATTGAGAATTTGTTTGTGAATATGCAGCACTGAAGCTCAAGGCCAACGAACATGATTAAGACCTCAAGTTTGTCGCCTTATTACTTAATCTTATGGCCTTGTTTTGAAGAGGGTCCATTTGCGaggtttgtgtttatatgtgtgtatatgttcttATTTTGTCCCATAATATTGTCGGTCACACAATGTCTGGTTAAGAAAGAAGAAGTATCAAAATTGTTGGGCTTATTTTTATTCCAAACAATCTTCTTCCATGACAAATCTTGgcacctacattacccacaatgcaacttgaaCACTTAACATTTCGATCGGAAATTCCGGTG

Function

symbol description
lrrc42 Orthologous to human LRRC42 (leucine rich repeat containing 42).

NR:

description
leucine-rich repeat-containing protein 42 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815470.1 True 2297 mRNA 0.41 7 17571578 17574473
XM_039815471.1 False 2295 mRNA 0.41 7 17571577 17574473

Neighbor

gene id symbol gene type direction distance location
dcaf8 dcaf8,LOC102795666 coding upstream 18647 17543670 ~ 17552930 (+)
amy2a NA coding upstream 245918 17317113 ~ 17325659 (+)
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding upstream 432031 17097270 ~ 17139546 (+)
LOC120568635 NA coding upstream 475753 17064933 ~ 17095824 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding upstream 510828 17047694 ~ 17060749 (+)
tceanc2 tceanc2 coding downstream 6186 17580659 ~ 17583761 (+)
LOC120567749 LOC103353067 coding downstream 213312 17787785 ~ 17967693 (+)
larp6b NA coding downstream 397582 17972055 ~ 17973556 (+)
LOC120569107 nrtn,LOC103353066 coding downstream 401503 17975976 ~ 17985540 (+)
im:7138239 LOC104950317,LOC103353072 coding downstream 461479 18035952 ~ 18041729 (+)
G115513 LOC103353967,LOC104931261,LOC102192286,LOC100692446,LOC101469749 non-coding upstream 6095 17565255 ~ 17565482 (+)
G115506 NA non-coding upstream 11697 17557925 ~ 17559880 (+)
G115488 NA non-coding upstream 86766 17484406 ~ 17484811 (+)
G115446 NA non-coding upstream 346839 17217910 ~ 17224738 (+)
G115445 NA non-coding upstream 361366 17204663 ~ 17210211 (+)
G115516 NA non-coding downstream 4437 17578910 ~ 17579589 (+)
G115585 NA non-coding downstream 393267 17967740 ~ 17968042 (+)
G115599 ranbp3,LOC102787870 non-coding downstream 442090 18016563 ~ 18019614 (+)
G115600 NA non-coding downstream 445432 18019905 ~ 18020110 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding downstream 478395 18052868 ~ 18058243 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 88024 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 959371 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1043895 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1343026 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 1650046 15865586 ~ 15921531 (+)
LOC120567767 NA other downstream 452807 18027280 ~ 18029895 (+)
G115729 NA other downstream 730676 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 992160 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1085956 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 1145892 18720365 ~ 18725447 (+)

Expression


Co-expression Network