zgc:113691 (LOC103353967,LOC104931261,LOC102192286)


Basic Information

Item Value
gene id zgc:113691
gene name LOC103353967,LOC104931261,LOC102192286
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17564711 ~ 17567046 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815474.1
AACATACAGACTAGAAATGGAGAAACGGCTAGCCTTGCTCTGTCCAAAGGCAACAAAAATCCAACCATCAGCACCTCTAATTAAACATTCGAtcatgtttgtttaatctgtacaaaaaccttagTGTAAAAACAGGGGTGTTATATGCCCAGACTTCTgacagtactgtatgtatttttttggcCTCGAGCCAGACTTGCTGTTTCTACCAGTTTTTATGCTAAGATAATCTAACCAGCTCTCACATATGTTTCATCTAACAAATCAAATAAGcccatttcccaaaatgtcaaaccattactttaaataatattacaattgttttgttgacattttgttCCACTAAAAAATGCGAAACTTAGTCTAAACACCAACTGAaaatcaaatatttattttaaaacagtcTAGCACACACTAAATCTTATCACTGCAGTGTTCATTTAgtttcctaataataataataatctgtattCAATGTTTGTCATCTGTAAAAACATTGGGTATTCTTCAAAAGTCCTATGTCTAGTGACTGGAAAGTTGCATCATATACatgctttaaatgtttttgttcaaCTTTTTCTTTCGGTAAACTTTATATTTTTAGGTAGGACAACCTAAAATCACCCTTAGCTCCCACACATCTAGGCAACATGACTCTACCAGCTTCCTGACTGCATTAAAGGCTGCCACTACATTTCAACAGttggacattttaaatatttaggaGGGAGATTGTAACTAATTGGTATAACTTCCTTTCATTTCAAAGAGAGCATCTGACTTTAAAAGCAGGCATTTGGCTGCTGCTACTGATTTTCCAACTCATCTATCTTATCTGTCGTGTGGTCGATCAAACTGATAGAATCTACCGTGTCACTGTTTGGATGCACAGATCACctgcagtggaaaaagttacTTATGTATGTAAAGCCTGTTTTTACTGGCACACAGCGTGTGGTCAGCACCTTACACACAGGGGACCTCTGTTAAGTCTGTGTTTCATATTTCCATAGATTAACAAGGGTATAGTTCTCAGATTAATTaacaaaatagaagaaaaaaaaagtgtcacttGAAACGGTGTCAAAGGGATTGTGGCGCCCTAATTAATGGTCATTCTAGCCCCAGCTTTGAGTTACACAGGAGCTGCCTTTCAAACAGATAACACTGTTAGAGAAATGTCAACTGCCTCAGTCTCAGGCATGCATGTAGCTGCTCATGCTTGTGAAGTGGATTACCAACACAATGCTCAAGGACTATTTCAATATGAAAATGCCTTTTTAATAtttactctttttttatattgtgaTTTGGGAATCTTACCATAGGATGGCTGCCTCAAATGGGAAAGGTGAAAAAGTGTCCAAATTTGAGACATTAAAACTTTTGGAGAAATGCAGAAAGGAAAGAGATGACGCCATGCACAGAGAAAGTGTTCTCAGAGAGAAGCTCCGACAGTATGAGTCGAGGATGCGTTCAACTGAGGCTCTGAAACAGAAACTGAAGACCTTGACTATGGACAACAAGGAGCTGAGGAAACAAGTGAAGGCTCTTCGTAATGAGATTGGACTTGAGTGCAACCCTAAATTCAATGGTAAAACCACAAAGGACATAATCAATGACTTGCATGAAAAGGACCGTGAGTGCAGTTCCCTGGTGGAGAAGGCTGGGAAACTGAGTCTGACCATTGATGATTTAACTTCAGAGTTGGCAAATACAGTCACctctaaaacacttttagaGGATCAAGTGCAGTCATTGCAGCAAAATCTCAAGGATATGACAAATAATCAACGCCGCCTGCTGAAGTTGTGGGAAGACAAGAAGGTTCAGAGGGAGCAGCTCGCCCTCCCTGCAATTGCCCAGAAACATGTACAGAAATCACTCGTCCATAAAGCAGTTCAAACTGAGATGTCTGTCAGTTCATCCCAAACGCTTCCAGTCAGTGCTTTTGAGACCAAGCAAGTCTCTCGGGACCATGACAAAAAGACAGTTTTGGATAAACACAGTTTTCCAACTTATGGAAATGACTATCATCATGACAAGAAAGCTTACATGCATGATGAAACTAAAGGAATTAAGAATTGACTGGACTTATTGACTGACACACTCTGCATTGAGAGAGTAAAGCATATCAGATATAGCAAATCATTATTAATGTGTGATATGTCTGTAAATAACAAACACATGAGTAAAAAGAGATACAATTTAAATAATGTACAGCTGATGTATGAATTGTTTTGGTGTCTTGTGTAATTTAAATTGTGACAATGTagttatttcagtatttgtatCACTCAACCTTACTTCATATATCTGTTTAAGACAAGATTTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815474.1 True 2336 mRNA 0.38 1 17564711 17567046

Neighbor

gene id symbol gene type direction distance location
ndc1 ndc1 coding downstream 174 17555980 ~ 17564537 (-)
LOC120569062 LOC103353959 coding downstream 22621 17492287 ~ 17542090 (-)
LOC120567855 NA coding downstream 265787 17297055 ~ 17298924 (-)
LOC120568842 LOC103353955,LOC104931259 coding downstream 288922 17183162 ~ 17275789 (-)
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding downstream 388300 17165891 ~ 17176411 (-)
yipf1 yipf1 coding upstream 306 17567352 ~ 17571388 (-)
tmem59 tmem59 coding upstream 8260 17575306 ~ 17579575 (-)
cdcp2 cdcp2,LOC103375059 coding upstream 16744 17583790 ~ 17591365 (-)
ranbp3b ranbp3 coding upstream 432854 17999900 ~ 18019896 (-)
LOC120568865 tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184 coding upstream 493649 18060695 ~ 18070437 (-)
G115563 dcaf8 non-coding downstream 11761 17548220 ~ 17552950 (-)
LOC120568661 NA non-coding downstream 207502 17356351 ~ 17357209 (-)
G115458 NA non-coding downstream 262153 17302264 ~ 17302558 (-)
G115435 NA non-coding downstream 400016 17164369 ~ 17164695 (-)
G115434 LOC103353952,LOC100690840 non-coding downstream 423494 17137754 ~ 17141217 (-)
G115568 NA non-coding upstream 5851 17572897 ~ 17573129 (-)
G115570 lrrc42 non-coding upstream 6417 17573463 ~ 17574125 (-)
G115577 NA non-coding upstream 40410 17607456 ~ 17608257 (-)
G115624 NA non-coding upstream 398767 17965813 ~ 17967692 (-)
G115640 NA non-coding upstream 508022 18075068 ~ 18076412 (-)
ly97.3 NA other downstream 455807 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 519649 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 752793 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 924899 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 1228755 16330952 ~ 16335956 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 485938 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 913624 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 1136018 18703064 ~ 18720587 (-)
G115941 NA other upstream 1277859 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 1364928 18931974 ~ 18935491 (-)

Expression


Co-expression Network