LOC120568173 (LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975)


Basic Information

Item Value
gene id LOC120568173
gene name LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21983014 ~ 21987482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815505.1
AATCACACCCGTACGTCATATCCAACGGACCGACAACATGTCCTCCGATTGAAGAAAGAGCTAGCAAGGAAGCAAACTGTTTAATGTTACTCACTAAGTTTAAAGGCGGACATGTCGCTACAGTCCAACACTCAGGCAGCTCAGTGTTACAGTTACAGCTGTTGCTGAAATAGATATTTTGTAGAAATTGTGATTCCTACAAAGGAATGAGCGATACTTACCAAGGAAGTCGTCCAGCTGGCTAGCAAAAAAGTAGCTAGCTGAGCTAGCTACTAGCTGTCGTTAGCACGAGCTGACGACTAGCTGTCGTTAGCACgagttctttgttttgtttttgaggtGAATGTCCGTGTAAACATGAAGAGAAGCTAGTGTGGACATTTGCTGTAACATTTAACGTGAATGTAGGAGTTTTGTAATCATGCACATGGTATATTTAGCAGTGTGTAGTTGAACTGAAAGTTAATAGTTTTTGGGTTATTAGACAaaactaacattagccaccGAGAGCAACTTTAGCAACAAAGATCTGATTCTAACCTCGGCCAGGACAGGACTGGAGACACGAAGATATGGGCAACTGTCTCAAGTCTCCGACATCAGACGACATTTCTCTGCTTCATGAATCACAGTCAGATAGGGCGAGTTTTGGTGACGGGACAGACCCTGACCTGGAGGCACCTCCGCCATACCAGGAGCAGGATCACATGCCCATGTACCATCCCACGCCTAGTCAGGCCCGTCTGGCCACccagctgacagaggaggagcAGATCCGCATAGCTCAGCGCATCGGCCTCATCCAGCACCTCCCAAAGGGTGTTTATGATGGAGGGCAAGACGGCTCAGAGAAGAAGATCAGAGAATGCGTGATCTGTATGCTGGACTTTGTATACGGTGACCCCATCCGGTTCCTGCCGTGTATGCACATCTACCACATGGACTGTATAGACGACTGGCTGATGAGATCCTTCACGTGCCCCTCCTGCATGGAGCCTGTGGATGCTGCCCTGCTCTCCACCTACGAGACCAACTGATTTTTCACCCCTCCTTCCCCAAGCTTAGATCAAACACGGCTCATCCAGCtccaaacacacgcacacacaaacccaaCAACTGCCCTCTTATAGAGTGAGAGGagatacaaacaaaaatgtgttggcTGTTTTCTTGCACTTTGAAAAATTCTAAATTTACTCATCTAATGTTGGCCTCCCATGTCTAAATAGTAAGCTCGTCTTAAACATCAGTTACACAAGTCTGTAAGAAACTGTTTCCAGGTGACCCTGCATGATTGAGTTTGTGTGCGTTTGTCATGCTGACGGTGAGCGGTGCGAGCAAGCTGTTTGGGTTGTTGGATGACTGTGCATTTCCACTTGAGCTGGTCTCAGTGGTGTTTCTCCCCAACTGACCCCAGTTCACCTTCGTTCCCATTTAGTCGTCATACAAATGTATAATTAGGATAACAGATTATTGACCTATGAGGTGTTCCTAGAAATCCATTTGATTAAATTGGAAGCTTTCTGTGGCAACAGTAAGACTTCCTCAAGATATTGATCCTGAACATGCTCTCATATTAGAATGGCCCTACATTTTGGAGGTGTGGGAATACACAGCTGAAGTTTACACTGTTGGTGTTAGATGGTAAAGGATAAATCACTTTCCAGTTTGACAGGATTACAGAGAAATTATGcacacactgaacagaaatcACCCAAAGTTTATATGTACACAATGTACAACTACATGAGATCAAGGCTACATGATATTTGGCCGCTCCGAATGGCCAGACTTTATAGAAAATGCTTTGAGTTAAAGGGAAAATGTGTACTTTGAATGTTTCACTAGGCGGTGTGTAAAGTAGCTGGCAGCCGATGTAAAGGGCTCACTTGTGCATGGGCAGGTGGATCAGTCGGTCAACAATTAGAAATGCTTGCACACACTTTTCATCTGATCCAGAGATTTGCACTTTACTTATAGGACAGTATCTaaacaatatattaatatatgtacCTTATAACCTTGCACTATCAATACTTCATTCCTTTATTTTGTGAGATGCAAAAGTTGTATAGCTGAAAAGGTATTTTCAAAGCTGTCAGTAGTCACTCATTACATTGAAGTAAGCCTGAAGATATGTTTCATGAAATCTGTGATTCAGTAGTGTGAGCCTCTGCTTTGTTCTGCTTGACGTTTGATGtgagtttttgtgtgtaagtgaagGGACAGAGGCTTGCTCCAGTTTAAAGgagaagtttgacattttgacacaaTTGGAAGGTATCAATCTTATTTCTGTGCATTAAGTTAGGAGTTGGAGCCAGGAGGTGATTAGCGTAGCCTAGCACAAAAACTAAGTAGGGGGAAACTGCTAGCATGGCTCCATAGCCAGGGTGTAACATGTTTGACAGCTAATTGTAAAAGGTGCAACGCCCTGTAAAACTATTTAAGTACAGATTAAACAACCCTGCTTCCAGTTTTTATTCTAAGCTAATTGCCTCCCTCTTCTAGCTTCATATTGAGCGTACTAGCGTACCAGAGAGAGGTATCAATCatctcttggcaagaaagtgaataagcatattttccaaaatgtcgaactgtttctttaagaaagaaaaaaagaggctaaATTTAAAGGGTGAATTTGACTTAATTTTTGATCCACATTAGCAAagtcattttctttatttaacatcacatttctttgttttattacaCTATAATTAATGTTGCTTTATTTCAATTTACTGTAGCAGTTACAAGGATTTCTTTTCAATATGTCATTATTTGGTgaaagtgtctttttttctgttacctgtgttttatctgtttgTTACATTTGTGTAAAATCCACTTTATATTTAGGAAAGTAAGTATATAACTTTTACACTGGTTTAAGGCTGTGCAAACCTCTGTCCCAAATGAATTTCATACTGAGAGACTTCTTTTATGGTGTAATAGTTACATCTGAGATATCAGTTTATACATTGAGCTTTTCCTTTGCTGTGTTTTTCATCTTAAATTCATTCTGAAAAATAATA

Function

NR:

description
PREDICTED: RING finger protein 11-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815505.1 True 3044 mRNA 0.41 3 21983014 21987482

Neighbor

gene id symbol gene type direction distance location
cacna1eb NA coding upstream 968 21921651 ~ 21982046 (+)
klhl14 klhl14,LOC102797134 coding upstream 66117 21899568 ~ 21916897 (+)
cebpd cebpd coding upstream 184160 21797438 ~ 21798854 (+)
snai2 snai2 coding upstream 273371 21707253 ~ 21709643 (+)
pcmtd1 pcmtd1 coding upstream 322506 21648818 ~ 21660508 (+)
LOC120568175 LOC104935914,LOC104955993,LOC103364110,LOC100699175,LOC102214823 coding downstream 8118 21995600 ~ 22002864 (+)
znf830 znf830 coding downstream 28440 22015922 ~ 22017307 (+)
LOC120568357 LOC103364114 coding downstream 78532 22066014 ~ 22151613 (+)
prkacbb LOC102779523,LOC103396312,LOC107383895,LOC108239664,LOC105935432,LOC104931534,LOC100699977,LOC101066292 coding downstream 201685 22189167 ~ 22200648 (+)
exosc4 exosc4 coding downstream 214070 22201552 ~ 22204193 (+)
G116794 mapre2 non-coding upstream 144262 21834466 ~ 21838752 (+)
G116746 NA non-coding upstream 320544 21614100 ~ 21662470 (+)
G116723 NA non-coding upstream 482620 21454330 ~ 21500394 (+)
G116657 NA non-coding upstream 656751 21270751 ~ 21326263 (+)
G116616 NA non-coding upstream 738621 21243641 ~ 21244393 (+)
LOC120568180 NA non-coding downstream 37631 22025113 ~ 22036950 (+)
LOC120568856 NA non-coding downstream 247337 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 320285 22307767 ~ 22314947 (+)
G116978 NA non-coding downstream 477853 22465335 ~ 22472840 (+)
G117077 NA non-coding downstream 759638 22747120 ~ 22747732 (+)
LOC120568354 NA other upstream 85623 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 1067692 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1607381 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2517633 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2930772 19017039 ~ 19052242 (+)
LOC120567968 NA other downstream 620567 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 654028 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1446143 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1605250 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 1863397 23850879 ~ 23855157 (+)

Expression


Co-expression Network