rab31 (rab31,LOC108232866,LOC107383545)


Basic Information

Item Value
gene id rab31
gene name rab31,LOC108232866,LOC107383545
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16640814 ~ 16649143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815516.1
TCCAGTTTAGTTGTTAgatggtcagtctgtctgtctcagggGCTGGGTTTCTCTTTTACTCGAGAAGAGGGGGGTGAAATCAGAGTTTCAAGCATGACGAGACAAAGACACTGACTTAACATTGGcaaatcatgttttaaaaaaCTTTCACAACTCACCATGGCTATAAGGGAGCTCAAAGTTTGCCTTTTAGGGGACACTGGAGTTGGGAAATCCAGCATCGTTTGCCGATTCGTTCAGGATCATTTTGACCACAACATAAGTCCCACAATAGGAGCATCGTTCCTAACCAAAACAGTGCCATCTGGAAATGAACTACACAAATTTCTGATCTGGGATACAGCCGGACAGGAAAGGTTTCACTCATTAGCTCCTATGTACTACAGAGGATCAGCTGCTGCTGTCATTGTCTATGACATTACTAAACTGGACTCTTTCCAGACATTGAAGAAATGGGTGAAAGAGCTTAAAGAACACGGTCCGGAGGACATTGTTGTAGCCATAGCAGGAAACAAGAATGATTTAGGAGACATCAgGGAAGTTCCTATGAAGGAAGCTAAGGAGTTTGCTGAATCAATTGCAGCTGTTTTCATCGAGACTAGTGCCCGAAATGCTGTCAATGTTGAGGAGCTCTTTCAGAAAATCAgTAAACAGATCCCACCCCTGGAAAATCCTGAGGTGGAGAGCAACGAGTCCTTTAAACTCACCCGGCAGCCGGCTGCGTCCGCCAGGAGATGCTGCTAGTACCACAAGTGGCTGATGGGATTACTTCCTTCAGCACCAGGGACCCCACCAGCACAGCACATGGTCCACAATGCACACAGTGTCTTACTCCTGGAAATGACAAGAAAGTGGACAGACAGAGGTCAGCTTGCATGTGTGGTCAACTGCAACATGAAACAACAGTATTGTATAGGTTATTGcacatttatttcagttaattgTAACAGTTTCAACTCTAGAAGTAGAAAGCCTTCATTTTGTCCCCATCAGGTGGTGTTTTGCCTGAATTACATAAAGATTTATATATGTGTGGTAATACTACACAGCTCATTACAAAGAGGCAGTTTTATCGCATTTTCCACAATAACTTTAAAATTCGGCACACATTAGTAACAAGTGATCTAGCTGATGGGCTTTTTAAAGCCGGGTTTTAGCTGTTGATGCAactacattttcatttcaagaGTTAACTGCTCAGTAGATTTTTCATTGCACTGTGGCCCTTAAATGGCACACATTAAATGAAGgtttttaaattagttttctTATGGAGCCTttgtgtacatgtatgtatcACTCTTATATAGAATTGTATTAGAAAATTCTGAATAAGGTTGTTGTGATCAAACCTTAGACAAACATTCAGTTCTGTAGCTCAAATGCTGCGGCTTTACATTCCACTTCATCATGTGTTTTCACACACATTGACTGTATAAGGGTTTAACTGTAATGCTGCAGAATGTATAGCTTAGTGGTCTAAATTTAACTTACAATATGACACCCCCTGTTGAAACACTGTGACCAATACTATACTGTAATTGTTTACATGGTAATTTGCTAAAGATGTTTTCTACATGCTGAAATGTATTGTCTGAGATTTCACTACAGGGAATGACTGTATACaacatgtatttttattttttacctaaGAAGAGAAAAGACCTGCATGTATTTTACTCTAAACATGTCTAAAGCTGTTAGTTCCAAAAGGGTTGTATTCTAATTACTAACCAAACTCTGAAGGAACATATAGTAATATAGCCCTAAACCAATCAATTTagcttgcaaaaaaaaagtgggaaaaaGGTAACAATGAAAATAGTGCTTTGTTCAGTGTAAACTAAAATGCTGTATATTTGCTGCTGTTTCTTTGGCAGTAGAGCCCTTGGATTTGTCACTTGAGATGTATCAgcacttttgtatacatttaacATTGTTAATTTGAAGTCACTTTTTTGTAAGCGttgaaacagttacagaactCTTAActgcattttttgaaatgtaaatgaGAGTTGGCTTGGATACAACAAGGTTTTCTTATGGAACAGTATTTCTGGTTCTACATGTCGATAGCTTTTAAGTTTATGTTTGTACTTAAGTTAGTTAGCGCacattaaaaagtaatttaaaaatgtaccaTTTTTACCAACATGTATGACAGGATAATGGAGTTCAATTCATAGTTTTTAATGCAATCATAGTCTAATTTTGCTCATATGTACTGTTCTCAAAGTCACACCAAACTCCTTTCACAAATCTTCAAATGAATGTGGCCTTGCTTCCACTAAAATTTAATGCAGTGATTGGTTGAAATTAAAAGTTGAAATTGAATTAGGAGTTGCTTGGTGGGCCAGATGTGCAGTATGTCAAATTTACCACCAGATTGATAAAGATTTCATTAAATACAGTAGATATATTTTCCTATGCAGTTTGGCATGATATTACCTCTAAGATATATGacatataatttgttttattttttacaagacGTTACATGTTGACATTGTGATGAGATTTCCAAGTATATTCGTCGCCACACAAGTgccctttttatgtttttctaaaCAAATGTATGACATGGCTTAAAAGTGCTAGAATAATGCATGAATTATTTGATCAGTACAGACTAATTGTACGCATAACGTCAACTTTGAAATTGCCAATTATCTGCAGCCATTCTTTCACTGTAAGCCGTCATGCTTCCCTGTATCCTTTTAAAATCAGATTAACTTTTGTATATTAATCAGTGTAATAAAGTATTGATTAttcta

Function

symbol description
rab31 Orthologous to human RAB31 (RAB31, member RAS oncogene family).

NR:

description
ras-related protein Rab-31-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07891 RAB22; Ras-related protein Rab-22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815516.1 True 2777 mRNA 0.37 7 16640814 16649143

Neighbor

gene id symbol gene type direction distance location
ralbp1 ralbp1,LOC102778314 coding upstream 1002 16629680 ~ 16639812 (+)
twsg1a twsg1 coding upstream 11942 16613574 ~ 16628872 (+)
ankrd12 ankrd12,LOC102778611 coding upstream 31351 16562196 ~ 16609463 (+)
ndufv2 ndufv2 coding upstream 80386 16553745 ~ 16560428 (+)
rab12 rab12 coding upstream 194272 16437581 ~ 16446542 (+)
vapal vapa coding downstream 2024 16651167 ~ 16679372 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding downstream 383733 17032876 ~ 17039104 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding downstream 393918 17043061 ~ 17045062 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding downstream 398551 17047694 ~ 17060749 (+)
LOC120568635 NA coding downstream 415790 17064933 ~ 17095824 (+)
G115295 NA non-coding upstream 32272 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 209159 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 262295 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 371985 16262657 ~ 16268829 (+)
G115136 NA non-coding upstream 391167 16242987 ~ 16249647 (+)
G115350 LOC104967252 non-coding downstream 111292 16760435 ~ 16821676 (+)
G115404 NA non-coding downstream 508485 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 519430 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 534009 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 555520 17204663 ~ 17210211 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 28608 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 113132 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 412263 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 719283 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 797720 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 757354 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 1378137 18027280 ~ 18029895 (+)
G115729 NA other downstream 1656006 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1917490 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 2011286 18660429 ~ 18674140 (+)

Expression


Co-expression Network