vapal (vapa)


Basic Information

Item Value
gene id vapal
gene name vapa
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16651167 ~ 16679372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815517.1
CCCACATGCTCGTTCGCAGAGCCAGTCAGCATTTGACTCAGTAGTGGCAGAGGGGATCTAGGACTTCCACTTGTCAGTTAGCTATTCCCTGGCTATTCCCCGATACCGAAATCAAGTGCATCCCCTCAGCTAAGATGTCAAAGTTGGATCAGATTCTTATCCTTGACCCTCCCTCCGACCTCAAATTTAAAGGTCCTTTCACAGATGTAGTCACCACCAACCTCAAACTGAAGAACCCTTCTGACAAAAAAGTATGTTTCAAAGTGAAGACAACTGCGCCGCGCAGATACTGTGTACGGCCAAACAGTGGTGTCATCGAAGCCGGAGCAACTGTCATTATCTCTGTCATGCTACAGCCCTTTGACTATGACCCCAATGAGAAAAGTAAACACAAATTCATGGTGCAGACGATTTTTGCCCCATCAAATGTTTCTGACATGGATTCATTGTGGAAAGATGCAAAACCCGATGATCTCATGGATTCCAAACTGAGATGTGTCTTCGAGCTGCCTTCTGAAAACGATAAAGTGAATGACGTGGAGGCGACCAAAGCAGCCCCAGTGATGAACTCTGCAAAGGCCGACTCATCAGCCGCCACGGTGCCTCTCACTGCCTCAATGGACGATACAGAGATGAAGAAAGTGCTGGAGAAGTGCAAGAGGCTGCAAACTGAGATGAACAAGCTGGCTGATGAGAACCGGCAATTAAAGGATGATGGTATGAGAATGAGAAAGGTACCTCGCTCCGACCACATGACATCAAACTCAACTAGCCTCCTCGGCCGAGAAGCCAGCACCGCCTCCCTGCCCTCCCTCCTCGTCGTCATAGCAGCCATCTTCATTGGATTCTTCCTAGGGAAGTTCATCTTGTAGACTGGGAGATGCATGCCTGCCGtatcccctcccccctccccccgcccCGGCTCCGGAATAAAACAGGCCTGGAAAAAACCGAGAAGTCTTTGTGTTGACTTTGCCATATCATTGGTAGTGTGGCCTACAGTGAGCACATCTGTACAGCATCATTCAAAGGCGTCGCCTTTTTACAATCTTACATGGTTAGTTCACACAGAGAGTTGAGAAAAGGAAGGCGACAAAAAAGTGATTGctcccttttttgttttctgttttttgatGGCGGGATTATACAGGTAATGTGGTGGAACAATGAATGTTGTATACGATCAGTCAACATGGAAAGATGCACCTAGAGTGAACCATGGGCAAGAGGCAGTCAGATTAAATTTCTTTCGCtcgctctctttttctttctttctctctgttgtttttaatagGAATTGAAATGGAATGTTGCGTGTcttgtaaatgttttaaatccttttaaacaaaaaaggaaagaacTTCCATCAAAAAGACATTGCTACCTGTTGCTGGATTGCCTCTGAAGTAAATTCGTTCGATTTGTAAGTTCTACTTCTTGTCTTGGAATGTTCAGGTCCAGCTGGGGATAATATAGGTGCCTCCTTCTTGTACATTTCTGTCCTTTCCTTTTTCTCACAACACCAATGCAgactttatatattattattattattattattattattattattattattattgttatacaAATCATATATTCCTTCTGAGGCAAATATTGACTGAAATAAGGTCTCCATTCTTAAAATCCTGTTCCATGGTATTAAGCattgaagaaataaaaatgaaaaaatgtcgTTTTGA

Function

symbol description
vapa Acts upstream of or within regulation of heart contraction. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in heart. Orthologous to human VAPA (VAMP associated protein A).

NR:

description
PREDICTED: vesicle-associated membrane protein-associated protein A

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06096 VAPA; vesicle-associated membrane protein-associated protein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815517.1 True 1703 mRNA 0.43 6 16651167 16679372

Neighbor

gene id symbol gene type direction distance location
rab31 rab31,LOC108232866,LOC107383545 coding upstream 2024 16640814 ~ 16649143 (+)
ralbp1 ralbp1,LOC102778314 coding upstream 11355 16629680 ~ 16639812 (+)
twsg1a twsg1 coding upstream 22295 16613574 ~ 16628872 (+)
ankrd12 ankrd12,LOC102778611 coding upstream 41704 16562196 ~ 16609463 (+)
ndufv2 ndufv2 coding upstream 90739 16553745 ~ 16560428 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding downstream 353504 17032876 ~ 17039104 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding downstream 363689 17043061 ~ 17045062 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding downstream 368322 17047694 ~ 17060749 (+)
LOC120568635 NA coding downstream 385561 17064933 ~ 17095824 (+)
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding downstream 417898 17097270 ~ 17139546 (+)
G115295 NA non-coding upstream 42625 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 219512 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 272648 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 382338 16262657 ~ 16268829 (+)
G115136 NA non-coding upstream 401520 16242987 ~ 16249647 (+)
G115350 LOC104967252 non-coding downstream 81063 16760435 ~ 16821676 (+)
G115404 NA non-coding downstream 478256 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 489201 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 503780 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 525291 17204663 ~ 17210211 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 38961 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 123485 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 422616 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 729636 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 808073 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 727125 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 1347908 18027280 ~ 18029895 (+)
G115729 NA other downstream 1625777 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1887261 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1981057 18660429 ~ 18674140 (+)

Expression


Co-expression Network