cirbpa (cirbp)


Basic Information

Item Value
gene id cirbpa
gene name cirbp
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26819838 ~ 26824570 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815547.1
GCCACCAATGAAACAACAGAAGAAGACGTCATCGCGCAGAGTGCTTAAAAGCGGAAGGCTCCTCCTTCGCTCCCGCATTCGATCTGCAGCCCCAATATCAGCTCCTGGGTTCCTGCCAGTTAAAGctacactACATTGAAGATGTCGGACGAGGGGAAATTGTTTATCGGAGGACTGAGCTTTGAGACCAATGAGGAGTCTCTGGCCGCGGCCTTTGGGAAATATGGAAACATCGAAAAAGTTGATGTGATCAGAGACAAAGAGTCGGGGAAATCTCGCGGTTTTGGCTTTGTGAAATATGACAACTGTGAAGATGCTAAAGATGCACTGGAAGGCATGAACGGAAAGACCCTAGATGGCCGGTCTATTCGCGTGGATGAAGCAGGGAAGGGTGGCCGCTCCAGAGGAGGTTTCAGCTCAGGCCCAAGAGGAGGACGAGGTGGATTCGGCGGGCGTGGGAGAGGTGGACGAGGTTACTCCAGAGGAGGTGGCGGATACAATGGAGACCGGGGCTATGGGGACAGGAGTTACAGTGACCGAAGCTTCAATAACGAGGGCAGGTTTGGCGGCGGCGGTGGTGGCGGTGGCAGCCAGTACAGGAGTAGTGGAGGCGGATACTCGAGCTACAGGGACAACAGGGGTCAGGGTGGATATGGTGACCGCTCTGGATCCTACCGCGATCACTACGACAGCTACACTGCACAAGAGTAAACATCTCCCTGATTCAAGATCATCACTTGGCTGGCTGTATTTCAAAGATGCGCTCCTCAAGAAAAATGTCCACGTGTTATTGCTGACCTTAGTTTTGTAGTTCTGTTGTAGTAGCTCaagcatcttaaaaaaaaaaaaaaaatgtagccaTGAGTTTTGGTCATTCCATAACAAACCATGTTACAAATTACAGTTCAAGACTCATACCCTGCTTGATTGGGCATCTTAATTCCTCAAAGGTCGTTGGCTAAAAGGCATCTGTGTAATCTAATTAGTACGGTCCCATTTTTTTGGGGACTGAACGGCTCATTACATGGCTTTTTGTTGAAACTACCATCGCTGTAGACTTTTTGTCCAGCACTAAAGTGTTTCCTGATTTGATTCCATTTagcttttattttatattgaaatagccaatggggtttttttatttatatttttatttccccTCTCAATCTCTGTTGCTGACCTACCTCTTGCCAGGTTATAAACTGAGTGAGGAAAGAAATCAAATTTCTCAAAGACGGACTTTTGGGGGATTTTATGCTAAATTCCTTTTACTATTAAAAACTTAGTATAGCTGAGGTTCCTGTGTGTTCAATTTCCCAAAATAGTGAATTCCTTTCAGACAGGTGAACAACACATCCGAAGTGGCTGGCTGTTCATGAAGTTGCGAATTGCAGCATGCTACAGTCTGTCCAAGGTATCTTCTGTGCTCTGCATTTTAAATGTGCTGTAAAATGGACTAATCTTGTTTAAGTgatcgaaaaatgtaactacgtTTCCCCAAAGTAATATCTTAACCGGGAACAGTTTTGTACTTTATGTTCTTTGTatgatcaacattttttttctttgtcagttGGCTTCATGGAGCCTATTAAACAGACTGTGGAAAATAA
>XM_039815548.1
GCCACCAATGAAACAACAGAAGAAGACGTCATCGCGCAGAGTGCTTAAAAGCGGAAGGCTCCTCCTTCGCTCCCGCATTCGATCTGCAGCCCCAATATCAGCTCCTGGGTTCCTGCCAGTTAAAGctacactACATTGAAGATGTCGGACGAGGGGAAATTGTTTATCGGAGGACTGAGCTTTGAGACCAATGAGGAGTCTCTGGCCGCGGCCTTTGGGAAATATGGAAACATCGAAAAAGTTGATGTGATCAGAGACAAAGAGTCGGGGAAATCTCGCGGTTTTGGCTTTGTGAAATATGACAACTGTGAAGATGCTAAAGATGCACTGGAAGGCATGAACGGAAAGACCCTAGATGGCCGGTCTATTCGCGTGGATGAAGCAGGGAAGGGTGGCCGCTCCAGAGGAGGTTTCAGCTCAGGCCCAAGAGGAGGACGAGGTGGATTCGGCGGGCGTGGGAGAGGTGGACGAGGTTACTCCAGAGGAGGTGGCGGATACAATGGAGACCGGGGCTATGGGGACAGGAGTTACAGTGACCGAAGCTTCAATAACGAGGGCAGGTTTGGCGGCGGCGGTGGTGGCGGTGGCAGCCAGTACAGGAGTAGTGGAGGCGGATACTCGAGCTACAGGGACAACAGGGGTCAGGGTGGATATGGTGACCGCTCTGGATCCTACCGCGATCACTACGACAGCTACAACAGGTGAACAACACATCCGAAGTGGCTGGCTGTTCATGAAGTTGCGAATTGCAGCATGCTACAGTCTGTCCAAGGTATCTTCTGTGCTCTGCATTTTAAATGTGCTGTAAAATGGACTAATCTTGTTTAAGTgatcgaaaaatgtaactacgtTTCCCCAAAGTAATATCTTAACCGGGAACAGTTTTGTACTTTATGTTCTTTGTatgatcaacattttttttctttgtcagttGGCTTCATGGAGCCTATTAAACAGACTGTGGAAAATAA
>XM_039815549.1
GCCACCAATGAAACAACAGAAGAAGACGTCATCGCGCAGAGTGCTTAAAAGCGGAAGGCTCCTCCTTCGCTCCCGCATTCGATCTGCAGCCCCAATATCAGCTCCTGGGTTCCTGCCAGTTAAAGctacactACATTGAAGATGTCGGACGAGGGGAAATTGTTTATCGGAGGACTGAGCTTTGAGACCAATGAGGAGTCTCTGGCCGCGGCCTTTGGGAAATATGGAAACATCGAAAAAGTTGATGTGATCAGAGACAAAGAGTCGGGGAAATCTCGCGGTTTTGGCTTTGTGAAATATGACAACTGTGAAGATGCTAAAGATGCACTGGAAGGCATGAACGGAAAGACCCTAGATGGCCGGTCTATTCGCGTGGATGAAGCAGGGAAGGGTGGCCGCTCCAGAGGAGGTTTCAGCTCAGGCCCAAGAGGAGGACGAGGTGGATTCGGCGGGCGTGGGAGAGGTGGACGAGGAGGTGGCGGATACAATGGAGACCGGGGCTATGGGGACAGGAGTTACAGTGACCGAAGCTTCAATAACGAGGGCAGGTTTGGCGGCGGCGGTGGTGGCGGTGGCAGCCAGTACAGGAGTAGTGGAGGCGGATACTCGAGCTACAGGGACAACAGGGGTCAGGGTGGATATGGTGACCGCTCTGGATCCTACCGCGATCACTACGACAGCTACACTGCACAAGAGTAAACATCTCCCTGATTCAAGATCATCACTTGGCTGGCTGTATTTCAAAGATGCGCTCCTCAAGAAAAATGTCCACGTGTTATTGCTGACCTTAGTTTTGTAGTTCTGTTGTAGTAGCTCaagcatcttaaaaaaaaaaaaaaaatgtagccaTGAGTTTTGGTCATTCCATAACAAACCATGTTACAAATTACAGTTCAAGACTCATACCCTGCTTGATTGGGCATCTTAATTCCTCAAAGGTCGTTGGCTAAAAGGCATCTGTGTAATCTAATTAGTACGGTCCCATTTTTTTGGGGACTGAACGGCTCATTACATGGCTTTTTGTTGAAACTACCATCGCTGTAGACTTTTTGTCCAGCACTAAAGTGTTTCCTGATTTGATTCCATTTagcttttattttatattgaaatagccaatggggtttttttatttatatttttatttccccTCTCAATCTCTGTTGCTGACCTACCTCTTGCCAGGTTATAAACTGAGTGAGGAAAGAAATCAAATTTCTCAAAGACGGACTTTTGGGGGATTTTATGCTAAATTCCTTTTACTATTAAAAACTTAGTATAGCTGAGGTTCCTGTGTGTTCAATTTCCCAAAATAGTGAATTCCTTTCAGACAGGTGAACAACACATCCGAAGTGGCTGGCTGTTCATGAAGTTGCGAATTGCAGCATGCTACAGTCTGTCCAAGGTATCTTCTGTGCTCTGCATTTTAAATGTGCTGTAAAATGGACTAATCTTGTTTAAGTgatcgaaaaatgtaactacgtTTCCCCAAAGTAATATCTTAACCGGGAACAGTTTTGTACTTTATGTTCTTTGTatgatcaacattttttttctttgtcagttGGCTTCATGGAGCCTATTAAACAGACTGTGGAAAATAA
>XM_039815550.1
GCCACCAATGAAACAACAGAAGAAGACGTCATCGCGCAGAGTGCTTAAAAGCGGAAGGCTCCTCCTTCGCTCCCGCATTCGATCTGCAGCCCCAATATCAGCTCCTGGGTTCCTGCCAGTTAAAGctacactACATTGAAGATGTCGGACGAGGGGAAATTGTTTATCGGAGGACTGAGCTTTGAGACCAATGAGGAGTCTCTGGCCGCGGCCTTTGGGAAATATGGAAACATCGAAAAAGTTGATGTGATCAGAGACAAAGAGTCGGGGAAATCTCGCGGTTTTGGCTTTGTGAAATATGACAACTGTGAAGATGCTAAAGATGCACTGGAAGGCATGAACGGAAAGACCCTAGATGGCCGGTCTATTCGCGTGGATGAAGCAGGGAAGGGTGGCCGCTCCAGAGGAGGTTTCAGCTCAGGCCCAAGAGGAGGACGAGGTGGATTCGGCGGGCGTGGGAGAGGAGGTGGCGGATACAATGGAGACCGGGGCTATGGGGACAGGAGTTACAGTGACCGAAGCTTCAATAACGAGGGCAGGTTTGGCGGCGGCGGTGGTGGCGGTGGCAGCCAGTACAGGAGTAGTGGAGGCGGATACTCGAGCTACAGGGACAACAGGGGTCAGGGTGGATATGGTGACCGCTCTGGATCCTACCGCGATCACTACGACAGCTACACTGCACAAGAGTAAACATCTCCCTGATTCAAGATCATCACTTGGCTGGCTGTATTTCAAAGATGCGCTCCTCAAGAAAAATGTCCACGTGTTATTGCTGACCTTAGTTTTGTAGTTCTGTTGTAGTAGCTCaagcatcttaaaaaaaaaaaaaaaatgtagccaTGAGTTTTGGTCATTCCATAACAAACCATGTTACAAATTACAGTTCAAGACTCATACCCTGCTTGATTGGGCATCTTAATTCCTCAAAGGTCGTTGGCTAAAAGGCATCTGTGTAATCTAATTAGTACGGTCCCATTTTTTTGGGGACTGAACGGCTCATTACATGGCTTTTTGTTGAAACTACCATCGCTGTAGACTTTTTGTCCAGCACTAAAGTGTTTCCTGATTTGATTCCATTTagcttttattttatattgaaatagccaatggggtttttttatttatatttttatttccccTCTCAATCTCTGTTGCTGACCTACCTCTTGCCAGGTTATAAACTGAGTGAGGAAAGAAATCAAATTTCTCAAAGACGGACTTTTGGGGGATTTTATGCTAAATTCCTTTTACTATTAAAAACTTAGTATAGCTGAGGTTCCTGTGTGTTCAATTTCCCAAAATAGTGAATTCCTTTCAGACAGGTGAACAACACATCCGAAGTGGCTGGCTGTTCATGAAGTTGCGAATTGCAGCATGCTACAGTCTGTCCAAGGTATCTTCTGTGCTCTGCATTTTAAATGTGCTGTAAAATGGACTAATCTTGTTTAAGTgatcgaaaaatgtaactacgtTTCCCCAAAGTAATATCTTAACCGGGAACAGTTTTGTACTTTATGTTCTTTGTatgatcaacattttttttctttgtcagttGGCTTCATGGAGCCTATTAAACAGACTGTGGAAAATAA
>XR_005640672.1
GCCACCAATGAAACAACAGAAGAAGACGTCATCGCGCAGAGTGCTTAAAAGCGGAAGGCTCCTCCTTCGCTCCCGCATTCGATCTGCAGCCCCAATATCAGCTCCTGGGTTCCTGCCAGTTAAAGctacactACATTGAAGATGTCGGACGAGGGGAAATTGTTTATCGGAGGACTGAGCTTTGAGACCAATGAGGAGTCTCTGGCCGCGGCCTTTGGGAAATATGGAAACATCGAAAAAGTTGATGTGATCAGAGACAAAGAGTCGGGGAAATCTCGCGGTTTTGGCTTTGTGAAATATGACAACTGTGAAGATGCTAAAGATGCACTGGAAGGCATGAACGGAAAGACCCTAGATGGCCGGTCTATTCGCGTGGATGAAGCAGGGAAGGGTGGCCGCTCCAGAGGAGGTTTCAGCTCAGGCCCAAGAGGAGGACGAGGTGGATTCGGCGGGCGTGGGAGAGGTGGACGAGGTTACTCCAGAGGAGGTGGCGGATACAATGGAGACCGGGGCTATGGGGACAGGAGTTACAGTGACCGAAGCTTCAATAACGAGGGCAGGTTTGGCGGCGGCGGTGGTGGCGGTGGCAGCCAGTACAGGAGTAGTGGAGGCGGATACTCGAGCTACAGGGACAACAGGGGTCAGGGTGGATATGGTGACCGCTCTGGATCCTACCGCGATCACTACGACAGCTACAATTGAACGGGCTGTCGGAGGCTTCAGTGGATCTCAGCAGCGGAGTAAAGTATCCGGCTTTAAATGGCAGTGATTGATGCAGATCTCTATCAGATCTAACCTGCAGCAGCGCTGGCGCAGCTGTAAGCAGTGGCTACGTTGGAGGAACCTGCCAACTGAAAGTGCGAGGAATTTGTGAATATCGAAACATTGGCTTGTCTTACACATTTCACATGTAATGCCTGCTACTCAAAGGTCCTAGACTAGAGGGGTGGCAGACGAGGCAAGATGGCAGAGCTATTACACCCTAGTGCCTGAACACTTTCAACAATGACTTCAACAATGACTTCACCTATCTGAATGTACAGgaatcctttattttattttttttttaaa

Function

symbol description
cirbp Enables mRNA 3'-UTR binding activity and small ribosomal subunit rRNA binding activity. Involved in mRNA stabilization; positive regulation of translation; and response to UV. Located in cytoplasm and nucleoplasm.

NR:

description
cold-inducible RNA-binding protein isoform X4

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815547.1 True 1613 mRNA 0.45 7 26821229 26824570
XM_039815548.1 False 971 mRNA 0.50 7 26821229 26824570
XM_039815549.1 False 1601 mRNA 0.44 7 26821229 26824570
XM_039815550.1 False 1592 mRNA 0.44 7 26821229 26824570
XR_005640672.1 False 1071 transcript 0.51 8 26819838 26824570

Neighbor

gene id symbol gene type direction distance location
armc6 armc6,LOC102784696 coding downstream 38740 26777037 ~ 26781098 (-)
LOC120569007 LOC103357614 coding downstream 46893 26765481 ~ 26772945 (-)
LOC120568933 LOC104965402,LOC103357616,LOC102791396 coding downstream 104403 26674033 ~ 26715435 (-)
LOC120567967 LOC104952378,LOC100703940,LOC102297870,LOC103357619 coding downstream 166880 26604861 ~ 26652958 (-)
LOC120568700 fam102b,LOC103357623 coding downstream 238619 26572397 ~ 26581219 (-)
LOC120568902 NA coding upstream 1146 26825716 ~ 26833382 (-)
stk11 stk11 coding upstream 30765 26855335 ~ 26880767 (-)
sugp1 sugp1 coding upstream 57227 26881797 ~ 26889897 (-)
LOC120568414 LOC102790141,LOC102302803,LOC104929656,LOC105934591,LOC102195635,LOC100696847,LOC101486463 coding upstream 152446 26977016 ~ 26985046 (-)
plekhj1 plekhj1 coding upstream 162162 26986732 ~ 26990773 (-)
G118186 NA non-coding downstream 87754 26731877 ~ 26732084 (-)
G118165 NA non-coding downstream 218453 26532167 ~ 26601385 (-)
G118076 NA non-coding downstream 340160 26477463 ~ 26479678 (-)
G118075 NA non-coding downstream 344882 26473887 ~ 26474956 (-)
LOC120569074 NA non-coding downstream 393040 26421450 ~ 26426798 (-)
G118308 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 non-coding upstream 135830 26960400 ~ 26963752 (-)
G118321 NA non-coding upstream 255437 27080007 ~ 27142908 (-)
G118328 NA non-coding upstream 294462 27119032 ~ 27190233 (-)
G118337 NA non-coding upstream 349982 27174552 ~ 27197648 (-)
G118341 NA non-coding upstream 354542 27179112 ~ 27182570 (-)
G118175 NA other downstream 153886 26661621 ~ 26665952 (-)
camk2n1a camk2n2 other downstream 500243 26315770 ~ 26319595 (-)
G117732 NA other downstream 1896520 24922203 ~ 24923318 (-)
G117560 NA other downstream 2283342 24499380 ~ 24536496 (-)
LOC120568990 LOC101487892,LOC104941256 other downstream 2963217 23851073 ~ 23856621 (-)
LOC120568986 epha4,LOC100711706 other upstream 818757 27643327 ~ 27675360 (-)
G118524 NA other upstream 888897 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 1321701 28146271 ~ 28152770 (-)
G118764 NA other upstream 2161521 28986091 ~ 28986319 (-)
G118856 NA other upstream 2595809 29420379 ~ 29420652 (-)

Expression


Co-expression Network