sft2d3 (sft2d3)



Basic Information


Item Value
gene id sft2d3
gene name sft2d3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1203988 ~ 1205541 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039815563.1
CTTGTCTGCCGGAAGTTTAGAGTCTGCTAGCAGTTAGCCAGTTAGCTTCCTCCGTCATGGCGGAACTGAACCGACAGCTGCAGGAGTACCTGTCCCAGTCTAAAGGCGGCGGAGCCCGGACCATCTCCCAGTCCAGCTCCAGCACCACGGTGGACCTGGACGACCCGGAGCCGGTACCAGGCAGCTGGTTCGGCCGGTGGTCGAGCCGCTGGTCCGGGTCCAGCCACTCCGGCCAAAGCTCCGGTGGAAACAGCGGCTTTTCCTGGCCGTGGTCGGCCGAGCCGGACCCCTGTCTGCCGGGCATGAGCCGCCGCCAACGGCTCGTGGCTTTCGCCGTGTGCGCGTCCTTCTCCGCGCTGTGCTTCGGACTGTCGGCGCTGTACGCGCCACTGCTGCTTCTCTACGCCCGCAAGTTCGCGCTGCTGTGGTCGCTCGGTTCGCTGTTCGCCATCGCAGCCGCGGCGGTGCTTCGCGGGCCCAGCAGACTCGCCTCCGGGCTGCACAAGTCCCCCGGAGCCGCGGTGTACCTGTGCGCCCTAGCCGGGACTCTGTACGCGGCGCTGAGCCTCCACAGCACCGTGCTGACGGCGCTGGGAGCTGCCCTACAGGTGGCTGTGATCTTCGGCTACGTGGTGTCTCTGCTGCCCGGTGGCAGCGCCGGGATCCGGTTTATGGGCGGCATGGCGGCGTCCGCCATCAAGAGGACAGTTACCGGGAAAACTATGCCGATCTGACCGGGGACGGAGTGCCACAGAGCGGACACGTTGCACAGACAGTCGGGGGGTGGGGACACAGGGGACCAGGGCCCGCGGGAGAGTCTGCAGACGGTCCCGGTGTCTGCAGATCAACACAGACACAATCTGCGGAGTTTTTAAGTTTTCAGCTGTGAACCAGGATGAAAATGTGCGGAATGTATCGGGCTGTTGTTGTGCTCCATGTGGACACGTGTTAACATTCagagtttaattttaaatagttGTAACCCtggtgttgtcttcccgttcaCCGTATCctaacttttagttttttctgggtcaaaattgaaaagatttccaagttttttttgtcactgtttccgAAATTGTAGTCGGATTTTTTTCCCAGCAATTGTTTTGGATATTTTTGTCGATTTTTCTTCTCGCGTTTTTGAAGCTTTGACcaaatgtctgtttgttttttacgataaaattaaataaaacacccaaattcaataaaagtagtgaactgatcatttattttacatgtgAAGAGTTATGGCTGTATGGAACCAgccactttatttttatttggttgaaagaaaacccaaattccTGACatggaattgtttttttatatttttatttttaaactggttAAAATTTGcccccgaggacaacatgagggttaattaTTATTATGGGCTGTTAACAGCCGGCTGCTGCTCACAGGACCAAATCAAGTTTAAGATGATTGAACTGTTTAAATTTTCTCTGAtgtattaattgattaattaattgattGTTTGAGAGAGTGAAGAGAATCCCTTTAATAAAGAGAACTAAACATGGCTTCATA

Function


symbol description
sft2d3 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3).

NR:

description
vesicle transport protein SFT2C

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039815563.1 True 1554 mRNA 0.52 1 1203988 1205541

Neighbor


gene id symbol gene type direction distance location
LOC120568681 LOC102798692,LOC102306166,LOC101470701,LOC102196346 coding downstream 67437 1120371 ~ 1136551 (-)
LOC120567934 NA coding downstream 150328 1050897 ~ 1053660 (-)
LOC120567797 NA coding downstream 302792 895507 ~ 901196 (-)
ccr9a NA coding downstream 355343 843808 ~ 848645 (-)
bfsp2 bfsp2 coding downstream 364222 823052 ~ 839766 (-)
LOC120568025 LOC103365692,LOC101173737 coding upstream 209615 1415156 ~ 1428314 (-)
LOC120567872 NA coding upstream 227694 1433235 ~ 1435275 (-)
LOC120568497 NA coding upstream 551080 1756621 ~ 1764145 (-)
lamc1 lamc1,LOC103398751 coding upstream 1313310 2518851 ~ 2601477 (-)
smg7 smg7 coding upstream 1420297 2625838 ~ 2662765 (-)
G111176 NA non-coding downstream 2551 1141042 ~ 1201437 (-)
G111194 NA non-coding downstream 4565 1198963 ~ 1199423 (-)
G111156 NA non-coding downstream 5062 1024060 ~ 1198926 (-)
G111157 NA non-coding downstream 5221 1171352 ~ 1198767 (-)
G111193 NA non-coding downstream 9353 1192432 ~ 1194635 (-)
G111201 NA non-coding upstream 25476 1231017 ~ 1231415 (-)
G111208 NA non-coding upstream 60120 1265661 ~ 1322654 (-)
G111213 NA non-coding upstream 84451 1289992 ~ 1294138 (-)
G111222 NA non-coding upstream 140966 1346507 ~ 1348302 (-)
LOC120568021 NA non-coding upstream 167314 1372855 ~ 1373625 (-)
LOC120568485 NA other downstream 89806 1100064 ~ 1114182 (-)
G111133 NA other downstream 103318 1008233 ~ 1100670 (-)
G111134 NA other downstream 193888 1008894 ~ 1010100 (-)
G111136 NA other downstream 198063 1005071 ~ 1005925 (-)
G110988 NA other downstream 354496 849182 ~ 849492 (-)
mfn1a LOC102798404,LOC103374728,LOC101171942 other upstream 91292 1296833 ~ 1314845 (-)
dhx9 dhx9 other upstream 147481 1353022 ~ 1390538 (-)
LOC120568022 NA other upstream 186267 1391808 ~ 1409528 (-)
G111226 NA other upstream 207415 1412956 ~ 1417959 (-)
LOC120567890 NA other upstream 537759 1743300 ~ 1743839 (-)

Expression



Co-expression Network