trim110 (cbln3,LOC102310989,LOC102795120,LOC102215561)


Basic Information

Item Value
gene id trim110
gene name cbln3,LOC102310989,LOC102795120,LOC102215561
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12720716 ~ 12725372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815602.1
ctctacttttgttattgacatttatttaaatgtatcctTAAATTCAGTTGAGATGAACATATGTGAGTTGGTGGTTAAACATGTAAACGCAGAGCACATGTAGAGAGTAAATCAGGCTAACAAGCTGTCAAGGATGATCTCCTGATCCCCTTTGGGCCTGACTGAGTCGAGTTAACGCTCATCTAAGGTCAGTGTTGCAACCCTTTACCCTTACTCTGATAACCAGCaagtcactcttttttttttttttttttatgtattgatCACCTACTTCCTTCCAAAAGGTCATGAGGTGTTATTTTTGTCCAACGCACATTTTCCCAGTAATAGTGGTTAAGTATTCTATTCATAGAGCACGGTAGGCAAAAGCCCAGTAGACAGGATTACTGGTGCACAGTTGGAATGAAACAAGGACTTCCCACTTGCCACCAGCTCAATACACGCTGTGTCTTATTAACCGTCGCTGCATTCTTACATGTAACAGCAGAATGTGACTTGTGCAAATGTCTTTCATTTGGTGTTGCACAGGCCCACAACATGATGTCTGATTACCTTTTCTCAGCATGTACAATTACTGACTGCAATCCAAATCatcaatgtgattttgatttctCTCTTGTGTATTCACTGTTTAGTTAGTAGCattgtgtgacacacacacacacacacacacacatccgggACCCTTCATCTGCTCACTATGTCGTCCCTGGAGGAAGAGCTGACCTGCTCTGTGTGCCGAGACTTCTTCAGCCAGGCCCACCCCCTGCCCTGTGGTCACAGCTTCTGTTCCGCCTGCATCCGCGAGGCTTGGAGTGTCCAGGCTGAGGGCAAAAGTCGCTTCACCTGCCCCCAGTGTCAGGAGGAGCACGGTGAAGTGCTGTGTGACTGCTGCCCTCCCAAGGCAGTAGAGGGACAGCCACTGTTGGCTGTCAAGACCTGCCTGAAGTGTGAAGTGTCACTGTGTGCCGAACACCTCCAACCCCATTTGGAGAGACCGGCGTTTAGCACCCACCTGTTGGTGGATCCGCTGGGGGACCTTTCCCAGCGAAGGTGcccgacacacacagagatattgCGCTACTATTGTGCCGATGAgagggtgtatgtgtgtagtgaCTGTCTGCTGGACGGAGGCCATGCTCAGCACAAAGTGAAGGCACTGAGACAAGTGGAAGAGGATCTGAAGGTCATTCTCCAGGTCCTGCTCAGCAAAGCAGAGGAGAAGCTGAAAGATGGAGTGCAAATCCTCAAAGAGCATGAGGGCATTGATTCAACCATGGCTGACTCTCTGAAGAAGGATCACACCCAGGTGGAGCGGCTGGGTTTAGACCTGCAGGTCCAGGTGAAAAGGCTGGTAGACGCTCTGAGGGAGATCACCAAGAAGGAGAAACAGCAGGTCATAAAGCGTGTGCATGAAGACTGCTCCAGGGTGAGAAGCGACATGTGCCAGGCGCTGAGCATACAGCGCTACCTGGCCTCACTGCTGGCAGAGACGGACCCCTTCCTGCTCATCTGGGCCTTTCAATCAGATGACACAAAGTTACTAGCTGACCTGAACAACCCACTTTTTATCCCTGATGCCGTCAGTCTGGACAGGAAACACATCTTGGAGGACATCGAGAGCAAGTATCGAGAGTTTATCACCGGCACCCTCCGCTGCCTCAGTGAACTCAAGAGGGAGCTCTTATCCAGTCCTTTGACTCTGGACACTAACACAGCCCATCCTCTGTTGAGCATCTCTGATGATCTTCGCTCAGTGACACGGGTTAAAAACCGCCTGCCCTGCGCTGCTCACCCCGAACGTTTCGACCACTGGCCGCAGGTCCTCACCACCCAGGCCTTCACCTCTGGGACTCACTTCTGGGAGCTGGAGGCTGAGGGATTCTGGGATATTGGCATCTGCTATAGAAGTATTGGACGGAAGGGGAAAGATGGCAATGCCTTTGGGAACAACAAGGTATCATGGAGCTTGACACAACAGCATGACAGGAAGCTGGCTGCCTGGCACAACCGCAGGAAGACCCGCCTCACGTACCAAATGACCGGCAACCGAGTTGCCGTTGCCGTGGACTACGGCGCAGGCACCGTCACCTACTCCGAGGTGGGACCATCAAACAACCTGACCCACCTCTACACTTTCTCCACCTCGTTCACTCAGCCGGTGTGCTTGGGCTTTGGACTCTACAAAGCTGAGCTCAACAGCCGCATCTCTATCGTCAAACTCTGAGGTGGAGAAAAGGGGAAGAAGGAAAAAGTAATGCTGACAGACAACAGGCTGGTTTAACTTAGACAAAGTCAAGACAAAGTGGTGTTAATTTATTTCCCCACTTCTGGAGCCTTCTCTGATGTTTCTCTCCTCTCAGATCTCAGCCCGAGCTCATCTTCTTCCTCAAAAAGACAATAAACCATATCCCTAAAACTGTGATCAGGTGATATTGACATGGAAATATCAGATATATTTGAAAATAAAGCATTCAATGAGTGAA
>XM_039815603.1
CAGGCTCATGTGACTTCTCTGGGTCCAGTGCCACTAGGGGGAGGTGAATCTGTTAGGATTAGCCTCCACATACACTCATCGATGGCCACAGTCTGCAAACACCAGGTCACCAACAGTTAGTAGCattgtgtgacacacacacacacacacacacacatccgggACCCTTCATCTGCTCACTATGTCGTCCCTGGAGGAAGAGCTGACCTGCTCTGTGTGCCGAGACTTCTTCAGCCAGGCCCACCCCCTGCCCTGTGGTCACAGCTTCTGTTCCGCCTGCATCCGCGAGGCTTGGAGTGTCCAGGCTGAGGGCAAAAGTCGCTTCACCTGCCCCCAGTGTCAGGAGGAGCACGGTGAAGTGCTGTGTGACTGCTGCCCTCCCAAGGCAGTAGAGGGACAGCCACTGTTGGCTGTCAAGACCTGCCTGAAGTGTGAAGTGTCACTGTGTGCCGAACACCTCCAACCCCATTTGGAGAGACCGGCGTTTAGCACCCACCTGTTGGTGGATCCGCTGGGGGACCTTTCCCAGCGAAGGTGcccgacacacacagagatattgCGCTACTATTGTGCCGATGAgagggtgtatgtgtgtagtgaCTGTCTGCTGGACGGAGGCCATGCTCAGCACAAAGTGAAGGCACTGAGACAAGTGGAAGAGGATCTGAAGGTCATTCTCCAGGTCCTGCTCAGCAAAGCAGAGGAGAAGCTGAAAGATGGAGTGCAAATCCTCAAAGAGCATGAGGGCATTGATTCAACCATGGCTGACTCTCTGAAGAAGGATCACACCCAGGTGGAGCGGCTGGGTTTAGACCTGCAGGTCCAGGTGAAAAGGCTGGTAGACGCTCTGAGGGAGATCACCAAGAAGGAGAAACAGCAGGTCATAAAGCGTGTGCATGAAGACTGCTCCAGGGTGAGAAGCGACATGTGCCAGGCGCTGAGCATACAGCGCTACCTGGCCTCACTGCTGGCAGAGACGGACCCCTTCCTGCTCATCTGGGCCTTTCAATCAGATGACACAAAGTTACTAGCTGACCTGAACAACCCACTTTTTATCCCTGATGCCGTCAGTCTGGACAGGAAACACATCTTGGAGGACATCGAGAGCAAGTATCGAGAGTTTATCACCGGCACCCTCCGCTGCCTCAGTGAACTCAAGAGGGAGCTCTTATCCAGTCCTTTGACTCTGGACACTAACACAGCCCATCCTCTGTTGAGCATCTCTGATGATCTTCGCTCAGTGACACGGGTTAAAAACCGCCTGCCCTGCGCTGCTCACCCCGAACGTTTCGACCACTGGCCGCAGGTCCTCACCACCCAGGCCTTCACCTCTGGGACTCACTTCTGGGAGCTGGAGGCTGAGGGATTCTGGGATATTGGCATCTGCTATAGAAGTATTGGACGGAAGGGGAAAGATGGCAATGCCTTTGGGAACAACAAGGTATCATGGAGCTTGACACAACAGCATGACAGGAAGCTGGCTGCCTGGCACAACCGCAGGAAGACCCGCCTCACGTACCAAATGACCGGCAACCGAGTTGCCGTTGCCGTGGACTACGGCGCAGGCACCGTCACCTACTCCGAGGTGGGACCATCAAACAACCTGACCCACCTCTACACTTTCTCCACCTCGTTCACTCAGCCGGTGTGCTTGGGCTTTGGACTCTACAAAGCTGAGCTCAACAGCCGCATCTCTATCGTCAAACTCTGAGGTGGAGAAAAGGGGAAGAAGGAAAAAGTAATGCTGACAGACAACAGGCTGGTTTAACTTAGACAAAGTCAAGACAAAGTGGTGTTAATTTATTTCCCCACTTCTGGAGCCTTCTCTGATGTTTCTCTCCTCTCAGATCTCAGCCCGAGCTCATCTTCTTCCTCAAAAAGACAATAAACCATATCCCTAAAACTGTGATCAGGTGATATTGACATGGAAATATCAGATATATTTGAAAATAAAGCATTCAATGAGTGAA

Function

symbol description
cbln3 Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and extracellular space.

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815602.1 True 2489 mRNA 0.50 7 12720840 12725372
XM_039815603.1 False 1970 mRNA 0.53 8 12720716 12725372

Neighbor

gene id symbol gene type direction distance location
acin1a acin1 coding upstream 36020 12665232 ~ 12684696 (+)
si:ch211-14a17.10 NA coding upstream 57518 12632485 ~ 12663198 (+)
LOC120568617 rnf212b coding upstream 104106 12612142 ~ 12616610 (+)
LOC120568040 NA coding upstream 109558 12609157 ~ 12611158 (+)
zp3f.2 NA coding upstream 112572 12605394 ~ 12608144 (+)
cbln12 cbln3,LOC103360302,LOC104927970,LOC101077223,LOC104956581 coding downstream 240 12725612 ~ 12728919 (+)
chd8 chd8 coding downstream 5073 12730445 ~ 12751968 (+)
tox4a LOC103360300 coding downstream 27663 12753035 ~ 12759269 (+)
LOC120568999 LOC104956575,LOC101467645 coding downstream 64475 12789847 ~ 12794774 (+)
eif2b5 eif2b5 coding downstream 70031 12795403 ~ 12801070 (+)
G113852 NA non-coding upstream 93197 12626079 ~ 12627519 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 117794 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 363995 12356340 ~ 12356721 (+)
G113782 NA non-coding upstream 499032 12221376 ~ 12221684 (+)
G113778 NA non-coding upstream 511276 12208714 ~ 12209440 (+)
G113938 NA non-coding downstream 52968 12778340 ~ 12779398 (+)
G113956 NA non-coding downstream 136253 12861625 ~ 12874310 (+)
G114000 NA non-coding downstream 301707 13027079 ~ 13028170 (+)
G114008 LOC104953400 non-coding downstream 426727 13152099 ~ 13153594 (+)
G114033 NA non-coding downstream 470889 13196261 ~ 13198734 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 120876 12582642 ~ 12599840 (+)
LOC120568189 nop9 other upstream 554439 12157449 ~ 12166277 (+)
abhd4 abhd4 other upstream 592694 12122669 ~ 12128022 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 1374491 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1834238 10885595 ~ 10886478 (+)
LOC120568152 LOC104963178 other downstream 176167 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 186067 12911439 ~ 12919198 (+)
G113979 LOC104959684 other downstream 203843 12929215 ~ 12975637 (+)
LOC120569010 NA other downstream 227176 12952548 ~ 12960349 (+)
col6a1 col6a1 other downstream 285203 13010575 ~ 13074594 (+)

Expression


Co-expression Network