cbln12 (cbln3,LOC103360302,LOC104927970,LOC101077223,LOC104956581)


Basic Information

Item Value
gene id cbln12
gene name cbln3,LOC103360302,LOC104927970,LOC101077223,LOC104956581
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12725612 ~ 12728919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815604.1
TTGTAAATACAAAATGATGTCTATATTTCATCAGGCTGGTTTATTTGTTCATAtactaaaaagaaaagaaaaaaacactaaacCAATATCCTCACAGAGAAATTGATGCTATATCCTGTTAATCCAGTCTGATATCTGATGTCTTATAAAATAAGCTACCTATCTACATAAAGCATTTCCTATGAAGGTGCACAGACATGTGATCCTTTTGAACTCAGCTTGAAGACACAAGAAGCAATAACCAATTTGATTggatttaaaaggaaaaaaggaaaacaactgACACTCAcgtgctaacgttactcttTGAAGCAGCTCAGATGCCCAATTATTTTcctattttctttatttcactGTAAAGGTGAGTGGGCGGATGTACTGTAACATAAAGggtgagaaagaagcagaaggAAAGGGGGGTGgctgggagagagaaagagaaaacggggaaagacagagagaaagatcagAGCATACTCTGGCTTGGTTACGATCAGACTGACTGCCGTGCTGTGAAATAATGTGATAGGCGAGCAAGACAACGAGGATTTTTGACCATATAACACTACTCCAGCCAGGGGGGGAACCTGATATATGTGGAATACAAGATTGTTCAGAAGGAAACAGTTGTCCAAAGAGATATTCGACTAAACATCCCAGGTTCAGTCATGCACCCCAGGTCAGTCACCTTCGACATCCCCATACTGTTGGGTGTGCTCCTGTTGTGGGGGCCTATGGAGTCTAGGAGCCAGAATGACACAGAGCCCATCATCCTCGAGGGGAAATGCTTGGTCGTGTGTGACTCCACTCCTTCATCCGAGCCCGCCGGTAACGCCCTGGGCATGTCGGTCCGCTCTGGCTCCGGACGGGTGGCCTTCTCCGCCAGCCGCCAGACCAACCACGAGCCCACGGACATGAGCAACCGCACCATGATCATCTACTTTGATAATATTTTGGTGAACGTGGGCACTCATTTTGACCAAGAGAGTAGTGTCTTCCTTGCACCGAGAAGAGGTGTGTACAGTTTCAACTTCCATGTTGTAAAGGCCTACAATAGACAAACTATTCAGGTCAGCTTGATGTTGAATGGCTGGGCAATGATTTCAGCTTTCGCCGGGGACCAGGATGTGACCAGAGAAGCTGCCACTAACGCCGGCCTGGTGATTATGGAGAAGGGGGACAAGGCCTACCTCAGACTGGAGAGAGGCAACCTGATGGGAGGCTGGAAGTACTCCACCTTCTCTGGGTTCCTGGTCTTCCCTCTGTAAGCAGGGTGGTTTAGGTTTTGGAAGGGTGATCAATTAGACTGAGCAGTAGTGATAATGAGGAAATGAGGTGGAGAAAAATGAAAGACGGTGGGAGAAAAGGAAGGCTTCAATCTGTAACTCTTTAAACAGTGCACGAAAGGATGTGTtttatgcaacaacaaaaaataagatTGTGCAATTTAGATGACTGTAACTTGAGAccaaaagaagaggaggagaaaataCATTCAGTAAACATGAGCAAACCTGTGGATTTAATTTgctctgtttctgtgaatgaatATTTCTTGGGTTTGTATAAGAGGTATTTTAATTGTGACAATATTATGAAGTAGCCATGTGCAATGTAGGCTTCTGTgctaagatgttttttttttattccaagtGTTTGAAACATTGCTGTGCTCCACATGGCATCATGTCTAGATAACAAACTTGCCAAACTTGCCCTTTACTCTGCTGTGTCGTTTGACTGATGCTCCTCTATTTGCCTGTTAGTCTCCTGCAACAAATGTTTATTTACACATACATTTCTATTAAGGagaaaatattgaaataaaatgatataaaGTTG
>XM_039815605.1
ATCAGCATCTTTTATCACCCCATCTTTCCTTCCATCTCCATCAGTTAAAGACTGATCTTCGCTCACTTTGCTGCACCTTGTCTTCGCAAACCCTTTCTTCCCTTTCCTAGCTACTTCTCGTTGGCATTCTTATCAGGTTTTTTTGCTGATGAAATCAACTTGAAAATACCAAgagatttttttgtgattgtcaTTCTGGCCCCTGCTGACACGGCACGTAGGACCCTGAAGAGATTTTGGATTTATGAGGGCAAACAAGAAAAactagaaagacagacagaaagggaaTGATTGACAGCTATGGCCAATGAAGAATTCTAAGTATTTTCTGAATATTATTTGGTTCTGAGACCCATCTGCTGGTGCTATTGTTGCCTGGGTGAATATTAATTTGTCCAAAGAGATATTCGACTAAACATCCCAGGTTCAGTCATGCACCCCAGGTCAGTCACCTTCGACATCCCCATACTGTTGGGTGTGCTCCTGTTGTGGGGGCCTATGGAGTCTAGGAGCCAGAATGACACAGAGCCCATCATCCTCGAGGGGAAATGCTTGGTCGTGTGTGACTCCACTCCTTCATCCGAGCCCGCCGGTAACGCCCTGGGCATGTCGGTCCGCTCTGGCTCCGGACGGGTGGCCTTCTCCGCCAGCCGCCAGACCAACCACGAGCCCACGGACATGAGCAACCGCACCATGATCATCTACTTTGATAATATTTTGGTGAACGTGGGCACTCATTTTGACCAAGAGAGTAGTGTCTTCCTTGCACCGAGAAGAGGTGTGTACAGTTTCAACTTCCATGTTGTAAAGGCCTACAATAGACAAACTATTCAGGTCAGCTTGATGTTGAATGGCTGGGCAATGATTTCAGCTTTCGCCGGGGACCAGGATGTGACCAGAGAAGCTGCCACTAACGCCGGCCTGGTGATTATGGAGAAGGGGGACAAGGCCTACCTCAGACTGGAGAGAGGCAACCTGATGGGAGGCTGGAAGTACTCCACCTTCTCTGGGTTCCTGGTCTTCCCTCTGTAAGCAGGGTGGTTTAGGTTTTGGAAGGGTGATCAATTAGACTGAGCAGTAGTGATAATGAGGAAATGAGGTGGAGAAAAATGAAAGACGGTGGGAGAAAAGGAAGGCTTCAATCTGTAACTCTTTAAACAGTGCACGAAAGGATGTGTtttatgcaacaacaaaaaataagatTGTGCAATTTAGATGACTGTAACTTGAGAccaaaagaagaggaggagaaaataCATTCAGTAAACATGAGCAAACCTGTGGATTTAATTTgctctgtttctgtgaatgaatATTTCTTGGGTTTGTATAAGAGGTATTTTAATTGTGACAATATTATGAAGTAGCCATGTGCAATGTAGGCTTCTGTgctaagatgttttttttttattccaagtGTTTGAAACATTGCTGTGCTCCACATGGCATCATGTCTAGATAACAAACTTGCCAAACTTGCCCTTTACTCTGCTGTGTCGTTTGACTGATGCTCCTCTATTTGCCTGTTAGTCTCCTGCAACAAATGTTTATTTACACATACATTTCTATTAAGGagaaaatattgaaataaaatgatataaaGTTG

Function

symbol description
cbln3 Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and extracellular space.

NR:

description
cerebellin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815604.1 True 1842 mRNA 0.43 4 12725612 12728919
XM_039815605.1 False 1606 mRNA 0.44 4 12726851 12728919

Neighbor

gene id symbol gene type direction distance location
trim110 cbln3,LOC102310989,LOC102795120,LOC102215561 coding upstream 240 12720716 ~ 12725372 (+)
acin1a acin1 coding upstream 40916 12665232 ~ 12684696 (+)
si:ch211-14a17.10 NA coding upstream 62414 12632485 ~ 12663198 (+)
LOC120568617 rnf212b coding upstream 109002 12612142 ~ 12616610 (+)
LOC120568040 NA coding upstream 114454 12609157 ~ 12611158 (+)
chd8 chd8 coding downstream 1526 12730445 ~ 12751968 (+)
tox4a LOC103360300 coding downstream 24116 12753035 ~ 12759269 (+)
LOC120568999 LOC104956575,LOC101467645 coding downstream 60928 12789847 ~ 12794774 (+)
eif2b5 eif2b5 coding downstream 66484 12795403 ~ 12801070 (+)
LOC120567759 vipr1,LOC106517907,LOC107384262 coding downstream 84399 12813318 ~ 12836982 (+)
G113852 NA non-coding upstream 98093 12626079 ~ 12627519 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 122690 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 368891 12356340 ~ 12356721 (+)
G113782 NA non-coding upstream 503928 12221376 ~ 12221684 (+)
G113778 NA non-coding upstream 516172 12208714 ~ 12209440 (+)
G113938 NA non-coding downstream 49421 12778340 ~ 12779398 (+)
G113956 NA non-coding downstream 132706 12861625 ~ 12874310 (+)
G114000 NA non-coding downstream 298160 13027079 ~ 13028170 (+)
G114008 LOC104953400 non-coding downstream 423180 13152099 ~ 13153594 (+)
G114033 NA non-coding downstream 467342 13196261 ~ 13198734 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 125772 12582642 ~ 12599840 (+)
LOC120568189 nop9 other upstream 559335 12157449 ~ 12166277 (+)
abhd4 abhd4 other upstream 597590 12122669 ~ 12128022 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 1379387 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1839134 10885595 ~ 10886478 (+)
LOC120568152 LOC104963178 other downstream 172620 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 182520 12911439 ~ 12919198 (+)
G113979 LOC104959684 other downstream 200296 12929215 ~ 12975637 (+)
LOC120569010 NA other downstream 223629 12952548 ~ 12960349 (+)
col6a1 col6a1 other downstream 281656 13010575 ~ 13074594 (+)

Expression


Co-expression Network