tgs1 (tgs1,LOC106942483,LOC106912366)


Basic Information

Item Value
gene id tgs1
gene name tgs1,LOC106942483,LOC106912366
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8189403 ~ 8203101 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815638.1
aaccttgccAAGTGTCAAATGCCATGGGTCCTTAAACAGCAAAGCTACACGCAGAGCTCACCCTCTGCCACAGCATCACTCTACAAAACACGTCGTCCTGCAGTTTTATTCTGAAAAGACATATCCGGAAATGCCAGTGTTGTCCCGGTGTCGTCCTAGCGGAACTGTGTGGAAATCGAGTTTCCTGAACGTGACTGTGATGTCGAAGGGAACCCACGCTGGTTTATTTTTACACAGCCTATGGTTTTGACACAGTCGTAACAGTCAGTAGCGTGAACGTATGCGCTCGTGCTGCCGTGTGCTTGTAAATTAGTGAGCTGATCGCCATGATGCTCGAGAGGAGCAGGGTGACAGTGGTGGCGGATATCTTCTTCAGCAGGAGACTCTCACCTAAagttgaggaggaggagaaaatcCACTGTCTCTGCTCCATAGCCTTTGTGCAGGATCGGGAGCTGTATCGTTCTGATAATAGATTGCTCTCAACTGATCTGGGAGACAATGTAGTCCAAGAAgcagatgaggaagaggaggaagaaggggaggctgaggtggaggaagaggaggtgtTGGATGAAGAGACTCAGCTGATGGCCAGCATGGGTCTGCCTCTGGCCTTTGCCTGCTCCTCTGACACGAGGAGGGCGAGGAGGAGGTCTAACAGGAAGCCTGCCGCACGCTGGGCAGAGTCAgcggaagaggaggaggaagaggaagacgaTCTACAGGTTGACAACACAGTAGTTGAAGAGAAGGAAGCGTGTGATCGACCGGAGGATGGAACACATGAGACCCAAGCTGCTGGCTGGGAAACCTACTGGGCTCAACAGGGTGAAGCTCTGCTGTGGAGCAGCTGGCTGGAGAAACATCCAGAGACTGATCCAGGAGCAGCGGCGGCTCTTTGGGATGACCCAGACACAAAAGCTGCCTGGGACAAACATGCAGCCGAGACTTACTACTCCTACTGGGAGCAGTACTCGTATTGGTCAGCACAGGGCTGGACCACTGACCAGTCCGTCTGTGATGGAAACGCTGGTGGTGGagacgcagcagcagcagcagcaggggtgaTGGGCGCATGCATGGAGACGCACACAGAGGAATGGAGGAATGGACAGACTGGAGCTGAGAGCCAACAGACAGAAGAAGCAAAGGCTCTTCATGACGACGATGAGGTTTTGAATGATCTGTTTGGACAGAACTGCACATTAGAAGCAGCTGGGAGATCCAAATCCGAGATAGACagacagtgtgtgagtgtggctGATATGGATCACCCTTCTGATGGTGGGAATAGTAACAAGAGACCTGCTGCCTCTTCACAGGACAACACAGCTGAACAGACAGATTCCCAGCAGCGCTCCGGCAGCTCTAACAGACCGTACGGCTCGAGGAATAAGATGCCAAATAGAGaagatgatgacgatgatgacaAACCCCCAGAAGGAGGACATGCTAAAGTCAAACGCAGTCATGAGCTGGATGTGGAAGAGAGCCCACATCTGACACCTGAGGAAGCCTGGAGCAAACTGGGACTCAAACGCAACCCAGAGCCTCGGTTCGACAGCGTGTTAAGCTTCAAAGGCGGTGCTGGTCAGAAGCATCCGAAGCATCAGAAGCAACGGTGGGCTAAGAGAGCGGTCCGCAGCATCAGCAAACACATCAGGTTCCCAGAAACTTGTGGAGACGAGAACACACAGCCACGGATCAGCAGCTCCCTCACCAAGGTCAAAAACTTCCTTGAAAAGAactggagagagacacagatgaCTCCATGTAACCAGGGTGAGATGGGAGGAGGAAGCACACAGGAACCGGATGATAAGCCTCCATTTCTGAAAAAAGTAACGGGAGAAGAAAGGAAGACGAGCAGGGAGAATATGAAAAGTGCTGAGGAAGGAAATACAGAGGCTGTGGAAGAAGATGGTTCTAATTCTCTGTCCAGTTTAGATGCAGAGCAAACTCTCAACTCTGCTACTGGGACTGTGGATagtgagaggatggaggaggaggaggaggaggaggaggaggatcagCCCGGTAGACGGCTACCAAGTCTAGAAATTCCTGACTTTCTTATATCTGACACACCTGAAGGCAACAGTGagTTAAGCATGAAAAATGGAAAGAAGCCAAAGAATAAGAAGAGTAAACGAGCGAGGAAGCAGCCGGTCCCAGCAGAAATGACGGCTGAACCGGAGCTGGCTAAATACTGGGCTCAGCGCTACAGACTCTTCTCTCGCTTCGATGAAGGGATCCGGCTGGACCGAGagGGCTGGTTCTCTGTGACACCGGAGAGGATCGCTGAGCACATCGCCCTCAGGGTGGAGCACAGCTTCCCGGACTCTCAGCTGGTCATAGACGCCTTCTGTGGTGTGGGAGGAAACGCCATCCAGTTCGCCCTCACTGGAAAGAGagTCCTGGCCATTGATATCGACCCGGTGCGCTTGAACTTGGCACGGCACAATGCTATGGTTTACAGCGTCGCTGACCGAATCGACTTCCTTCAAGGGGACTTTCTTCAGCTTGCACCCCGTCTCCGTGGCAATGTGGTCTTCCTTTCACCACCATGGGGAGGGCCAGACTACCTGACTGCTGAAGTGTTTGACATCAAGACCATGATGCAGCCTGATGGATTTGAGATATTCCGCCTGGCCAAACTGATAACAGACAACATAGTGTACTTCCTGCCTCGCAATGCTGACATGGATCAGATAGCCTCTCTGGCTGGTCCAGGAGGGAAGGTGGAGGTGGAGCAGAACCTCCTCAACAACAAGCTGAAGACCGTGACTGCTTACTTTGGCAGCTTGATAAAGTCCGACAGCTAGTAACGCTGGCAAAGCCATGCATCGATGTGGATTTCTACCTCCGCTAAATGAGAATGGAAGACAAATTGTACTTTTCCTCTATTTCTCTAATTATACTAGAGAGTCCATTCAAGTACTAGAAAGTACAACAATTTTaccctacttttttt

Function

symbol description
tgs1 Orthologous to human TGS1 (trimethylguanosine synthase 1).

NR:

description
trimethylguanosine synthase isoform X2

GO: NA

KEGG:

id description
K14292 TGS1; trimethylguanosine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815638.1 True 2977 mRNA 0.52 16 8189403 8203101

Neighbor

gene id symbol gene type direction distance location
LOC120569115 LOC103362161 coding downstream 1727 8178285 ~ 8187676 (-)
LOC120568280 LOC104938035,LOC103362163,LOC102210891,LOC102784122 coding downstream 30615 8150224 ~ 8158788 (-)
ccr12a LOC101473018,LOC104945947 coding downstream 42511 8140232 ~ 8146892 (-)
cntnap2b LOC101476225,LOC102211470 coding downstream 52846 8103401 ~ 8136557 (-)
LOC120567605 LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359 coding downstream 103477 8079296 ~ 8085926 (-)
xkr4 xkr4 coding upstream 29173 8232274 ~ 8249635 (-)
LOC120568351 LOC103362164 coding upstream 54551 8257652 ~ 8283049 (-)
LOC120568719 LOC103362165,LOC102298204,LOC100711787,LOC101471174,LOC102214684 coding upstream 81829 8284930 ~ 8313389 (-)
LOC120568861 dnajb6,LOC104936025,LOC102214955,LOC101470590,LOC100708567,LOC102785555 coding upstream 115446 8318547 ~ 8332839 (-)
exoc3 exoc3 coding upstream 130407 8333508 ~ 8347264 (-)
G112903 LOC104931871 non-coding downstream 129370 8056602 ~ 8060033 (-)
G112902 NA non-coding downstream 143922 8044110 ~ 8045481 (-)
G112876 NA non-coding downstream 220069 7967433 ~ 7969334 (-)
G112877 NA non-coding downstream 223098 7964439 ~ 7966305 (-)
G112887 NA non-coding downstream 263211 7924102 ~ 7926192 (-)
G112922 NA non-coding upstream 7726 8210827 ~ 8211057 (-)
G112924 NA non-coding upstream 9019 8212120 ~ 8212771 (-)
G112923 NA non-coding upstream 12808 8215909 ~ 8219170 (-)
G112980 NA non-coding upstream 251390 8454491 ~ 8454705 (-)
G112984 LOC104949840 non-coding upstream 294632 8497733 ~ 8497975 (-)
cdh6 LOC103366829,LOC104926815 other downstream 1025733 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 1199281 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1452891 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 2010517 6172281 ~ 6178886 (-)
G112328 NA other downstream 2336956 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 284366 8487467 ~ 8487539 (-)
G113070 NA other upstream 577351 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 911283 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1197686 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 1837585 10040686 ~ 10267078 (-)

Expression


Co-expression Network