slc39a6 (slc39a6)


Basic Information

Item Value
gene id slc39a6
gene name slc39a6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4145863 ~ 4168656 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815664.1
CTTTCCCAATCCTATATGCAAATTGTGACTCTGCATTTCCCTCCTTTTGCACTCTTTGGTTTTAGCAACTCAGATTTCCGGGAGCCCCTGAAGGCGGCGCAGCCACATCCTTCATTTACCGGACCGGAGAGACACGAGCGGCGCCGTGAAGTCTTCACACACCAACCGGAGCGGATAACACACAGCGCTTACATTCACCAGATGATGTTGATGTTGCTGTTGCTCCTCGCCGGGAGTTGGTCCGGCGGCGACGGTTCGGACTGCGGCCCCGTCACCACGGAGACCAACAGCGCGGCGCGTTTACTGTCGGCCGTGGTGGACACGCAGAGAGCCGAGCAGAGCCAGAGGCAACACCTGGAGGCCCTGTTCAACAGATATGGAGAAAACGGCACCATCTCTCTGGCCGGTTTAAAGCGCCTGTTACAGAACGTGGGTCTGGATCGCATCAGGACTGTTACGGTGCAACATCACGAAGAACCAGGCCACCACgatcaccaccaccatcatcaccaTAACCACGATCACCACGATCACCAccatcacaacaacaacaacaactcccAGAGGCACGCTGAACCCTCTCAGCCCAGAAAGCTTCCAGAAACGTCTAGAGTGTCTATAGACCAGGACAGCCGCCACATCCCGCACAGTAAGCGGAccgcggcggcggcggcggctgAGGGCACGGGCACCACAGCGGTGTACAGCGGCCAGCTGGTGGTTGAACCAGACGTAGCGCGTAAGGGACAAAACGGAAGCCCGGAACAACGCAGTCCTGCAGCGGAGGAGACTACTGCCGGGCTGACAGTCACCGAAAGCCAGACAATGGCGGTTGCAGTCACCCGGGGCGACCACGACCATGAACACGACCATGAACACGACCATGACCATGAACACGACCATGATCACGAACACGGTCATGGTCACAACCACAAGCGAAGCGTGGACAGCGCGGAGTGTCTGAACGCCTCCACCATCCTGTCGTCACACGGGATGTTTCAGGGCGTGGACGTGACCCTCGCCGACTTCAGTTTCCTCTGCCCCGCCCTCCTCAACCAGATCGACGGCGGAGCGTGCATCCTGCACGGAGGCGCCGCAGATGACGCGCAGACGGaCCATAAACACAGTCACGGCGACCACAACAACTCGGAGCCCGGCCACAGGGAGAGCCCTGCtggagaaagtgacaaaaacattgcaaTAGCGTGGGTGGGAGGCTTCGTCTCAATCACCATCATCAGCCTGCTCTCCCTGCTCGGCGTCGTCCTCATCCCGCTCATGAACCGAGTTTTCTTCAAGTTCCTCCTCAGCTTCTTGGTCGCGCTGGCCGTCGGCACGCTGAGCGGCGACGCCTTCCTTCATCTCATCCCCCACTCTCAGGGAggccaccatcaccaccacaagGATGAAACGGGGCTGGGCGTGGAGGGACATCACCTCCACGATGAGCAGGAGGAGAACCTGGACGCGGTGTGGAAGGGTCTGACGGCTCTGAGCGGGGTCTACATCATGTTCCTCATCGAACACTTCCTCACACTGGGCAAAATGTACAAGGACAAgaaacaaaagATCCAGAAGCAGTGGGATCAGAACGACAAAGCAGATCCAGAGAAGCAGCCAGCTCTGGAAGAGGGCGACCTGAAGCCATCTGAAGACGTGGAGACTAATGGCGCGGGTATTTTTGGCGACCACTCCATCAACCTGCACGGCGGCAGCGTGGCGGAGGAGGAGCAGGTGATGCTGGCGCCCCAGTTGTCGGCCGCCCCCTCGCCGCAGGGGTCTGCCGCCTACACCGCCGAGGACTGCGAGAACAAGTGCCACTCCCACTTCCACGACACGGTGGGCCAGACGGACAGCATGCACCACCATCACCACGACTACCACCACATCCTGCACCACCACCACTCCCAGAACCACCACCCCCACAGCCACTCCCACTCCTACTCGGAGGAGCACTTCCAGCAGGCCGGCGTGGCCACGCTCGCCTGGATGGTCATCATGGGGGACGGGCTGCACAACTTCAGCGACGGCCTGGCCATCGGCGCTGCCTTCACTGAGGGGCTGTCCAGCGGTCTCAGCACGTCTGTGGCCGTTTTCTGTCACGAGCTGCCGCACGAGTTGGGTGACTTTGCGGTGCTCCTGAAGGCCGGTATGACGGTGCGCCAGGCCATCCTCTACAACGTGCTGTCGGCCATGATGGCGTACCTGGGAGTGGTGATCGGCATCGTGATCGGACACTACGCCGAGAACATCTGCATGTGGATCTTCGCCCTCACGGCCGGCCTCTTCATGTACGTGGCTCTGGTGGACATGGTGCCGGAGATGTTGCATAACGACGCCGGGGACCACGGCTTCAGCCACTGCGGCTTCTTCCTGCTGCAGAACGCCGGCATCCTGCTGGGCTTCTGCATCATGCTGCTAATCGCCATTTTCGAGCACAAAATCCAGCTGGACCTGGGCTACTGAGGGACGGCGTTTGGTCCTGAGCTCCGTGTGCGTCTCAGTGTCTCCGTCAGAAGTGTACTGTgtctatttttatttgttgttgttgtagacTGTCCCGTCGCCTTGATTTAGTTTCTATTGTCCACACGGTGTAGGGAGAAGTAGAAACGCAGAAATCGAATGTTGTCGTAGCGGAAGCAGAAGTTAAAAAGCTGCAGCGGCTCTGACGTTTGCCGCTCAAACTCATTAGgagtaaaaaataataactgaagaagttgttttttcattttcttagaCTGCGGTTACAAACGTGCAGTAATTTCTCTTTTTGTCAAAAAACTCATGAAgtcagagaagagaaaaagaaataaaaagtccCCCGTCCAAATTGCTCTTTCCACAAAAATGCTCATTTGATGAATATTTCACTTTTTAGCAGTTCCTATTAACAATAAACTCAAAAAGACCCTCTCATGGGGTTATCTGTCCCTTAAAATTTTTTGCCatcatatttgatttgattcttTACCCCATTATGTCTGATTTCTGATGTGTTGGAAGTGTTTCTGCTGCTGAGTCAAACCACATCAGTATTTCAAATAATCCCCTAAAGTACCGTAACAGCTCCACTGTTAGAAacactagcctggctccgccctcctacgtacttctgctcaattttcatttcccttcagtactctgTCTGGGTTTatggtatattcttgggttttctccggccaaatctttaccggtccaatcagagAACAGAGGGAGGGGCTGAGAACGgtgacgttgaggtcgtgctctagtttgagttgtacttccttaatggcggcggagaaagatgcgagcgaagccattcggtccgttgtggcaacgctgccgaatatccagaagttaaagcccgagcaagaacaatctttgctgagttgtgttggtggccgtgATGTTGGTGCCCTCCTCCCCTAAAAaagaaatggaccagagtctggtcctaccaggctaatgtaccagagtctggtcctaccaggctagtggaccagagtctggtaggaccaggctaagaCAACACCGCACTGGGAAACCATTCCCATTTTAAATCCCCTCCTATGAGAACTTAAAGTAGTGTCCACTATACACCCCAATCTCTTTCAGAATAATCTCTGCAGGCGATATTATCCCAATTCACGCTGCGACTATCGATCATTTCACATCTGATTAATCTGGAGCTTTACATTTTCCTCAGAAGTGATCTTCTCTTCTGTGAAGCTTTTTGATTTGGGATCATGCAGCGGCACTTTGTAGTGTTAAATTATCCAAAAACAACACTAGATACATTTTAATTAGCATTTTAGGCACCGCTTGAACCGAACTGAACCCTAAACTGTGACCTCTGTTCATGTGGAGCTGAACAATCTACATTCATTTCTGCCAATTTTcagattttagttttttcctttttgttgtttgttacaTTTTTGAAGGCCATGTCATGTGTACCAGAATTCTTTAGTTTCAATGCCTTTACTTTTGAGGCTGCCTGTTACTGTAGCTTTAAGCTTTACTTTAAGGATTTCAAACTAAGCTGTCAAACTATTTGTTTTAGTCCAACGCCTGCAGACGTCTTGATTCTGTTAGTTAATAAAGTGGCGGCATGGATCCGTTTTCTTGTCTTTAAACGAGTGCAAAGCTCTAAATGTCTCCtaggtagggttgggtaccgaaacccggggCCTAAACAACCGGTATCTACCGAATGGaaacgcagatttcggtgcctcatttttGTGCCGCTTAAATGCcttctgcgctgctctctgatgctccgaaacagacgtttgaggcaacagaagcatcgctgcatgtcacactagttaacacttcacctgacagcaggtagcgttagcctaccgttagctag
>XM_039815665.1
ACCAGTCTGGTGCAGAGCGCATAAACCCAACGTGTTACTGTTTACCTTCCtgcagtgttttgtgtgtttgagatCAGACACGCGTGGCCGGTTGAaggattttatatttttatggctttatgtttttgtaaacTTACGCGGAGCTTCGGTAGCTATCGCGAGGCCCGAGCCTGGGCCGCAGCCAGCCAGCCACCTGGCAGATGCCGTCTGTCAGCATCCTTCGGGAAATCTAACGAAAAATCGCGGCTAGCAAAGGGAGGCTAACCCGGCTAAAAATCACAGTTACAAGCTGACGAGAGATGATGTTGATGTTGCTGTTGCTCCTCGCCGGGAGTTGGTCCGGCGGCGACGGTTCGGACTGCGGCCCCGTCACCACGGAGACCAACAGCGCGGCGCGTTTACTGTCGGCCGTGGTGGACACGCAGAGAGCCGAGCAGAGCCAGAGGCAACACCTGGAGGCCCTGTTCAACAGATATGGAGAAAACGGCACCATCTCTCTGGCCGGTTTAAAGCGCCTGTTACAGAACGTGGGTCTGGATCGCATCAGGACTGTTACGGTGCAACATCACGAAGAACCAGGCCACCACgatcaccaccaccatcatcaccaTAACCACGATCACCACGATCACCAccatcacaacaacaacaacaactcccAGAGGCACGCTGAACCCTCTCAGCCCAGAAAGCTTCCAGAAACGTCTAGAGTGTCTATAGACCAGGACAGCCGCCACATCCCGCACAGTAAGCGGAccgcggcggcggcggcggctgAGGGCACGGGCACCACAGCGGTGTACAGCGGCCAGCTGGTGGTTGAACCAGACGTAGCGCGTAAGGGACAAAACGGAAGCCCGGAACAACGCAGTCCTGCAGCGGAGGAGACTACTGCCGGGCTGACAGTCACCGAAAGCCAGACAATGGCGGTTGCAGTCACCCGGGGCGACCACGACCATGAACACGACCATGAACACGACCATGACCATGAACACGACCATGATCACGAACACGGTCATGGTCACAACCACAAGCGAAGCGTGGACAGCGCGGAGTGTCTGAACGCCTCCACCATCCTGTCGTCACACGGGATGTTTCAGGGCGTGGACGTGACCCTCGCCGACTTCAGTTTCCTCTGCCCCGCCCTCCTCAACCAGATCGACGGCGGAGCGTGCATCCTGCACGGAGGCGCCGCAGATGACGCGCAGACGGaCCATAAACACAGTCACGGCGACCACAACAACTCGGAGCCCGGCCACAGGGAGAGCCCTGCtggagaaagtgacaaaaacattgcaaTAGCGTGGGTGGGAGGCTTCGTCTCAATCACCATCATCAGCCTGCTCTCCCTGCTCGGCGTCGTCCTCATCCCGCTCATGAACCGAGTTTTCTTCAAGTTCCTCCTCAGCTTCTTGGTCGCGCTGGCCGTCGGCACGCTGAGCGGCGACGCCTTCCTTCATCTCATCCCCCACTCTCAGGGAggccaccatcaccaccacaagGATGAAACGGGGCTGGGCGTGGAGGGACATCACCTCCACGATGAGCAGGAGGAGAACCTGGACGCGGTGTGGAAGGGTCTGACGGCTCTGAGCGGGGTCTACATCATGTTCCTCATCGAACACTTCCTCACACTGGGCAAAATGTACAAGGACAAgaaacaaaagATCCAGAAGCAGTGGGATCAGAACGACAAAGCAGATCCAGAGAAGCAGCCAGCTCTGGAAGAGGGCGACCTGAAGCCATCTGAAGACGTGGAGACTAATGGCGCGGGTATTTTTGGCGACCACTCCATCAACCTGCACGGCGGCAGCGTGGCGGAGGAGGAGCAGGTGATGCTGGCGCCCCAGTTGTCGGCCGCCCCCTCGCCGCAGGGGTCTGCCGCCTACACCGCCGAGGACTGCGAGAACAAGTGCCACTCCCACTTCCACGACACGGTGGGCCAGACGGACAGCATGCACCACCATCACCACGACTACCACCACATCCTGCACCACCACCACTCCCAGAACCACCACCCCCACAGCCACTCCCACTCCTACTCGGAGGAGCACTTCCAGCAGGCCGGCGTGGCCACGCTCGCCTGGATGGTCATCATGGGGGACGGGCTGCACAACTTCAGCGACGGCCTGGCCATCGGCGCTGCCTTCACTGAGGGGCTGTCCAGCGGTCTCAGCACGTCTGTGGCCGTTTTCTGTCACGAGCTGCCGCACGAGTTGGGTGACTTTGCGGTGCTCCTGAAGGCCGGTATGACGGTGCGCCAGGCCATCCTCTACAACGTGCTGTCGGCCATGATGGCGTACCTGGGAGTGGTGATCGGCATCGTGATCGGACACTACGCCGAGAACATCTGCATGTGGATCTTCGCCCTCACGGCCGGCCTCTTCATGTACGTGGCTCTGGTGGACATGGTGCCGGAGATGTTGCATAACGACGCCGGGGACCACGGCTTCAGCCACTGCGGCTTCTTCCTGCTGCAGAACGCCGGCATCCTGCTGGGCTTCTGCATCATGCTGCTAATCGCCATTTTCGAGCACAAAATCCAGCTGGACCTGGGCTACTGA

Function

symbol description
slc39a6 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within cell migration involved in gastrulation and epithelial to mesenchymal transition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC39A6 (solute carrier family 39 member 6).

NR:

description
zinc transporter ZIP6 isoform X2

GO: NA

KEGG:

id description
K14712 SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815664.1 True 4366 mRNA 0.53 12 4145863 4168656
XM_039815665.1 False 2564 mRNA 0.59 12 4147763 4168316

Neighbor

gene id symbol gene type direction distance location
si:ch73-170d6.2 NA coding downstream 24512 4110746 ~ 4121351 (-)
cldn15la LOC104937175,LOC107383743,LOC108229378 coding downstream 118277 4021167 ~ 4027586 (-)
saga LOC100700585,LOC102198835,LOC102289605,LOC101471160,LOC103367699,LOC102794384 coding downstream 127601 4001441 ~ 4018262 (-)
proca NA coding downstream 161868 3972332 ~ 3983995 (-)
LOC120568530 NA coding downstream 255947 3883756 ~ 3889916 (-)
LOC120567835 LOC106949703,LOC103156008,LOC107087008 coding upstream 318672 4487328 ~ 4499789 (-)
LOC120567837 NA coding upstream 337066 4505722 ~ 4510614 (-)
si:dkey-7l6.3 NA coding upstream 350705 4519361 ~ 4527181 (-)
efr3a efr3a coding upstream 726605 4895261 ~ 5063854 (-)
LOC120568537 NA coding upstream 939385 5108041 ~ 5148701 (-)
G112019 NA non-coding downstream 4943 4092565 ~ 4140920 (-)
G112018 LOC102799398 non-coding downstream 6932 4090508 ~ 4138931 (-)
G112012 NA non-coding downstream 17491 4107443 ~ 4128372 (-)
G112009 NA non-coding downstream 44995 4100174 ~ 4100868 (-)
LOC120567799 NA non-coding downstream 63781 4074729 ~ 4082082 (-)
G112048 NA non-coding upstream 119123 4287779 ~ 4288307 (-)
G112050 NA non-coding upstream 137547 4306203 ~ 4306723 (-)
G112061 NA non-coding upstream 224194 4392850 ~ 4409467 (-)
G112068 NA non-coding upstream 259862 4428518 ~ 4495792 (-)
G112069 NA non-coding upstream 260371 4429027 ~ 4480919 (-)
G111942 NA other downstream 108900 3504498 ~ 4036963 (-)
LOC120568325 NA other downstream 512464 3629565 ~ 3633399 (-)
LOC120568522 NA other downstream 560337 3564546 ~ 3585526 (-)
LOC120569104 NA other downstream 689329 3445400 ~ 3456534 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other downstream 774088 3314646 ~ 3371775 (-)
G112043 NA other upstream 69446 4238102 ~ 4238670 (-)
G112046 NA other upstream 98882 4267538 ~ 4284083 (-)
G112233 NA other upstream 1495348 5664004 ~ 5668687 (-)
LOC120568546 NA other upstream 1555077 5723733 ~ 5746081 (-)
G112328 NA other upstream 1624507 5793163 ~ 5852447 (-)

Expression


Co-expression Network