ift57 (ift57,LOC102793808)


Basic Information

Item Value
gene id ift57
gene name ift57,LOC102793808
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4377165 ~ 4393309 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815668.1
CTAGGAAACGCAAAAGTTCAACGGAAACCCTCGATGCTGATGTTGGGAATATAGATAACGGTGCTAACGGCTAGTCGCTTTAGATGATTTAAGAGCTGCAGTTACCACAGTTGTGTCGCATTTTAAGTTTCCGACCTCTAGATATCCTTCAAACTGACAGACATTTTAACTTTGATAAACGACGAGTCCGAATTCAAGTTTTAAACATGATTTCGCtggcagctaacgttagctacatagcCAGCTAGCGTCAGCTCTCGGTTGCCTTAACAACAGAGAGGAAGCTAAACAAACTCGGCTCACAAGCTAGCGAGCTAGCTCAATGCTAGGTGGCTAAATGAGTCCACGGAATTGATTTAGTCTTTtattatttgaacatttagtTGTGTGACTGGCAGACCGATCATGGCGGAGGACGGTAGACGCGGAGACGAAGAGGACCGCGGCCCCGGAGCAGCGCACCAGCTGTTTGTAGTGATGGAGTGTTTGCTGGAGAAGTTGAAGGTGTTGAACTACGAGGAGGAAGTTCTGGCTAAACACAACATGAAAAATATGTCCAGGCATTACTTCGTCTCCAGTCCATATCTGGCGTGCAACTCGGGCGAGCAGTTCTTCATGTTCACCATCATCGCGGCGTGGCTCATCAACGAGGCAGGGAGGCCGTTCACCGAGCCTCAGGAGTACGACGAACCCAACGCCACCGTGTCCAACATCCTGGCAGAGCTCCGGGCTTTCGGGGTTAAGGTGGACTTCCCGCCCTCCAAACTGAAATCCGGTTCAGGCGAACACGTCTGCTTCGTGCTGGACCGGCTGGCTGAAGAGGCCCTGAAGAGGAGGGGCTTCTCCTTCAGAAGACCAAACTATCCAACAGAAACCACAGAAGAAGAGTCCGTGCTAGAGGACGACGCAGAGCTCACACTCAGCAAAGTAGAGGAGGAGATGATCGAGGAGcctgatgaggaggaggagaacgtGATGGACCTGGAGGCTCTGAAGCTACGAACCACTCACACTGAAGCCGAACCGTCCTCCAAGCCGGACGAGATTCTTGAGTCCACGGTTGATGCGGCAGAGTGGAACCTGGAGGTGGAGCGAGTCCTGGCCCAGCTCAAAGTTACCATCAGGACCGACAACAAGGACTGGAGGATCCACGTGGACCAGATGCATCAACACAAAGACGGGATCAAGTCCTCGCTCAAAGACGCCAAGAGCTACCTGGACAAGCTGCAGGAGGACATCGGTAAGACTCTGGAGAAGGTGGGCAGCAGAGAGAAATACATCAACAACCAGCTGGAGCATCTGATCCAGGAGTACCGCAGCGCTCAGGCCAAACTCAGCGAGGCAAAGGAGCGCTACCAGCAGGCCAGCGGAGGGGTGACTGAGAGGACCAGAGTCCTGGCAGAGATCAGTGAGGAGCTGGAGAAGGTGAagcaggagatggaggagaaaGGCAGCAGCATGTCTGACGGAGCTCCGGTGGTGAAGATCAAGCAGAGTCTGACCAAGTTGAAGCAGGAGATCGTTCAGATGGACGTGAGGATCGGCGTGGTCGAGCACACGCTGCTGCAGGCCAAACTCAAAGAGAAGTCCAACATGACACGCGACATGCACGCCACCAACATCTCCGAGCCCGTCGCCGGGCCCTTCGCTTAGGTCCACCTCCGCACTGGGCACCTGAAACAGGAACCCAAATCTCACGTGAACTCAAAGGGCTGAGGCGCTTGGagtttcattttgaaaatggagaaaaaaaactatttatttatacttcaaaaacattgttttttgtatttgcaGCAGCATTAAGTCATAAAAACATTTGGAGTTGAACAGTTAATCCATTTGGCTCTTTGTCCTGAATGTCCCGTATTGTGTATCTTTTGTGTATATGaacataaaatacatttgtataaagataatttttggCTTCA

Function

symbol description
ift57 Acts upstream of or within several processes, including cilium organization; epithelial cilium movement involved in extracellular fluid movement; and photoreceptor cell maintenance. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle B. Predicted to be active in Golgi apparatus; centrosome; and cilium. Is expressed in head and retina. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human IFT57 (intraflagellar transport 57).

NR:

description
intraflagellar transport protein 57 homolog

GO: NA

KEGG:

id description
K04638 IFT57, HIPPI, ESRRBL1; intraflagellar transport protein 57

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815668.1 True 1931 mRNA 0.51 11 4377165 4393309

Neighbor

gene id symbol gene type direction distance location
cavin4a murc,LOC104936762,LOC101469804,LOC100705704,LOC101164252 coding upstream 28007 4337085 ~ 4349158 (+)
crfb16 NA coding upstream 312144 4051320 ~ 4065021 (+)
LOC120568532 NA coding upstream 379306 3995617 ~ 3997859 (+)
LOC120568531 NA coding upstream 384576 3986445 ~ 3992589 (+)
dusp28 dusp28,LOC102795231 coding upstream 413112 3959592 ~ 3964053 (+)
LOC120568271 NA coding downstream 23312 4416621 ~ 4418585 (+)
tmem71 NA coding downstream 65575 4458884 ~ 4474374 (+)
kcnq3 kcnq3 coding downstream 222724 4616033 ~ 4785371 (+)
LOC120567839 hhla1 coding downstream 412255 4805564 ~ 4835053 (+)
oc90 NA coding downstream 444155 4837464 ~ 4888212 (+)
G111870 NA non-coding upstream 72378 4175530 ~ 4304787 (+)
G111856 NA non-coding upstream 229203 4098350 ~ 4147962 (+)
G111853 NA non-coding upstream 235487 4093351 ~ 4141678 (+)
G111852 NA non-coding upstream 236261 4092839 ~ 4140904 (+)
G111847 NA non-coding upstream 237670 4091414 ~ 4139495 (+)
G111891 NA non-coding downstream 39199 4432508 ~ 4433103 (+)
G111893 NA non-coding downstream 59504 4452813 ~ 4495891 (+)
G111897 LOC102195644,LOC102307680,LOC106675584 non-coding downstream 91325 4484634 ~ 4488017 (+)
G111904 NA non-coding downstream 122391 4515700 ~ 4516747 (+)
G111906 NA non-coding downstream 124940 4518249 ~ 4520189 (+)
tmeff1a tmeff1,LOC102775778 other upstream 50979 4212124 ~ 4326186 (+)
G111850 LOC102799398 other upstream 238232 4090508 ~ 4138933 (+)
G111848 NA other upstream 239622 4088644 ~ 4137543 (+)
LOC120568521 NA other upstream 525131 3540987 ~ 3852034 (+)
LOC120568327 LOC102295145 other upstream 852050 3500679 ~ 3525115 (+)
dnaaf11 NA other downstream 105685 4498994 ~ 4592347 (+)
G111910 NA other downstream 152116 4545425 ~ 4546082 (+)
LOC120568547 LOC106674584,LOC106676354,LOC106675207,LOC106675343,LOC106676464,LOC106676424,LOC106675739 other downstream 1394914 5788223 ~ 5789417 (+)
epdr1 epdr1,LOC104965688 other downstream 1590548 5983857 ~ 5993711 (+)
LOC120568055 NA other downstream 1610376 6003685 ~ 6016600 (+)

Expression


Co-expression Network