ccr12a (LOC101473018,LOC104945947)


Basic Information

Item Value
gene id ccr12a
gene name LOC101473018,LOC104945947
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8140232 ~ 8146892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815671.1
caactgggcTAACCGGCAAccacagtgtcatgtcactcttatgtagaaaacttcaagtaaagtctAACTGAATAATATTATCTGATTTCCACATAAAccacgcacgcactcacacgCAAAAATCAACTTTTTCCCAATTGGGGACATGGCTTTTTGTCCCCAAATGGACAAGCTGTCCCCAATAACTGATCCTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacaaaaacatttcctGGAGACCTAACCTAGCCATAACATGCACCATTAATTGGTCTTTAGTCTGAAATGTGTCCCAGAAGGTAGCCTAAAtcacgcgtgcacacacacacacacacacacacaacacacacacacacacacacacacaagcacacaaacacatttcctGGAGAcctaccctaaccataacaatCCAAAAATCAACTTTTTTCCCAATTGGGGACATGGGTTTTTGTCCCCAATTGGACAAGCTGTCCCCCATTAACTGCTCTTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacacacaaactcacagacactaaaacaacaacacattagTGTGTTGTAGGACAGCCCCTTTAGCAGATGCCTCTCTTTGTCACCTAAACTCTTGAGCTCAGTGAGCTGCATTGATCACTCCAGAGACGCTCGGGGCTTCCTTGTGTTCCTCATTGTCCTCCTCTCACTGCGCTCCTGCAAATCTGCACTGGTAAGAACAGAATCTACGCACACTCAAGAGCACTTTTACGCACAATTGAGATCTGACATGTTTGCGCAAAATCAAACCCCAGCCATGAGCTACGATGATTCATATCTGCTCTTCAAGGACCTATTCGGTTACGGTGAAGCCAATGACACGACTGACCCAAATTATGTGATCACCGGAACTGTCCAGCTCTGTGCTAAGGATAAAGTCAACAAGTTTGGTGCAGCATTCATCCCAATGTTCTACTACTCCAACTTCATCTTGAGTTTCCTTGGCAATGGGCTcgtcctcttcatcatctacaagTATGAGAAGCTCAGTACAGTGACAAACATCTTCCTCCTGAATTTGGTCCTCTCCAACCTTCTCTTTGCCTCCAGTCTCCCCTTCTGGGCGACGTACCATCTGTCTGAGTGGATTTTTGGCATGGCTCTGTGTAAGCTGGTCAGCAGTGCCTACTTCATCGGCTTTTACAGCTCCATCCTCTTCCTCACGCTCATGACATTTGACCGATACCTCGCGGTGGTGCATGCAGTGGCAGCTGCTAAAAGCAGGAAGAAGGCGTATGCCATCGCTGCGTCAGTGGCAGTTTGGTGCATCAGTATTGTAGCGAGTGTGAAAGAGCTGGTTCTCCAAAATGTGCGGCAGACTCCGTTAAATGGAATCGTATGTGAGGAGTCAGGATACGCTGAGAGCACTATGGAGCACTGGCGTCTGGTCACTTATTACCAACAATTCCTGGTCTTCTTCATTCTCCCGCTGTTCATGGTGATGTACTGCTACATCAGCATCACTGTCCGCATCATGTCCACCCGCATGAAGGAGAAGTGCCGCGCCATCAAGCTCATATTTATTATCATCTTCACCTTCTTCGCCTGCTGGACGCCCTACAATATTGTCATCCTCCTTCGAGCTATTACCATCTCCAATGAGGGTGAAAATTTGTGTTCTGACGCAGAGAGCTTGGACTATGCCCTGTACGTGACCCGGAATGTAGCCTATTTGTATTGTTGCATtagtcctgtgttttacacatttgtgGGCAAGAAGTTCCAGAGCCACTTTAGAAGGCTGTTGGCCAAGAGGATCCCCTgtctgaagagacacatgagcCTCAGCAGCCAGAGCACCAGAACCACGTCACAGAGGACACCACACTCTGCTTATGAGTACTAGAcaggcatgcacgcacgcacgtacgccgcgcgcacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacaca
>XM_039815672.1
aactgggcTAACCGGCAAccacagtgtcatgtcactcttatgtagaaaacttcaagtaaagtctAACTGAATAATATTATCTGATTTCCACATAAAccacgcacgcactcacacgCAAAAATCAACTTTTTCCCAATTGGGGACATGGCTTTTTGTCCCCAAATGGACAAGCTGTCCCCAATAACTGATCCTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacaaaaacatttcctGGAGACCTAACCTAGCCATAACATGCACCATTAATTGGTCTTTAGTCTGAAATGTGTCCCAGAAGGTAGCCTAAAtcacgcgtgcacacacacacacacacacacacaacacacacacacacacacacacacaagcacacaaacacatttcctGGAGAcctaccctaaccataacaatCCAAAAATCAACTTTTTTCCCAATTGGGGACATGGGTTTTTGTCCCCAATTGGACAAGCTGTCCCCCATTAACTGCTCTTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacacacaaactcacagacactaaaacaacaacacattagTGTGTTGTAGGACAGCCCCTTTAGCAGATGCCTCTCTTTGTCACCTAAACTCTTGAGCTCAGTGAGCTGCATTGATCACTCCAGAGACGCTCGGGGCTTCCTTGTGTTCCTCATTGTCCTCCTCTCACTGCGCTCCTGCAAATCTGCACTGATCAAACCCCAGCCATGAGCTACGATGATTCATATCTGCTCTTCAAGGACCTATTCGGTTACGGTGAAGCCAATGACACGACTGACCCAAATTATGTGATCACCGGAACTGTCCAGCTCTGTGCTAAGGATAAAGTCAACAAGTTTGGTGCAGCATTCATCCCAATGTTCTACTACTCCAACTTCATCTTGAGTTTCCTTGGCAATGGGCTcgtcctcttcatcatctacaagTATGAGAAGCTCAGTACAGTGACAAACATCTTCCTCCTGAATTTGGTCCTCTCCAACCTTCTCTTTGCCTCCAGTCTCCCCTTCTGGGCGACGTACCATCTGTCTGAGTGGATTTTTGGCATGGCTCTGTGTAAGCTGGTCAGCAGTGCCTACTTCATCGGCTTTTACAGCTCCATCCTCTTCCTCACGCTCATGACATTTGACCGATACCTCGCGGTGGTGCATGCAGTGGCAGCTGCTAAAAGCAGGAAGAAGGCGTATGCCATCGCTGCGTCAGTGGCAGTTTGGTGCATCAGTATTGTAGCGAGTGTGAAAGAGCTGGTTCTCCAAAATGTGCGGCAGACTCCGTTAAATGGAATCGTATGTGAGGAGTCAGGATACGCTGAGAGCACTATGGAGCACTGGCGTCTGGTCACTTATTACCAACAATTCCTGGTCTTCTTCATTCTCCCGCTGTTCATGGTGATGTACTGCTACATCAGCATCACTGTCCGCATCATGTCCACCCGCATGAAGGAGAAGTGCCGCGCCATCAAGCTCATATTTATTATCATCTTCACCTTCTTCGCCTGCTGGACGCCCTACAATATTGTCATCCTCCTTCGAGCTATTACCATCTCCAATGAGGGTGAAAATTTGTGTTCTGACGCAGAGAGCTTGGACTATGCCCTGTACGTGACCCGGAATGTAGCCTATTTGTATTGTTGCATtagtcctgtgttttacacatttgtgGGCAAGAAGTTCCAGAGCCACTTTAGAAGGCTGTTGGCCAAGAGGATCCCCTgtctgaagagacacatgagcCTCAGCAGCCAGAGCACCAGAACCACGTCACAGAGGACACCACACTCTGCTTATGAGTACTAGAcaggcatgcacgcacgcacgtacgccgcgcgcacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacaca

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: C-C chemokine receptor type 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815671.1 True 2063 mRNA 0.47 3 8140232 8146892
XM_039815672.1 False 1992 mRNA 0.48 2 8140232 8146891

Neighbor

gene id symbol gene type direction distance location
cntnap2b LOC101476225,LOC102211470 coding downstream 3675 8103401 ~ 8136557 (-)
LOC120567605 LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359 coding downstream 54306 8079296 ~ 8085926 (-)
tmem70 NA coding downstream 72783 8063083 ~ 8067449 (-)
LOC120568123 xpr1,LOC101080083,LOC103396762 coding downstream 117326 7971949 ~ 8022906 (-)
ttpa ttpa coding downstream 179165 7952012 ~ 7961067 (-)
LOC120568280 LOC104938035,LOC103362163,LOC102210891,LOC102784122 coding upstream 3332 8150224 ~ 8158788 (-)
LOC120569115 LOC103362161 coding upstream 31393 8178285 ~ 8187676 (-)
tgs1 tgs1,LOC106942483,LOC106912366 coding upstream 42511 8189403 ~ 8203101 (-)
xkr4 xkr4 coding upstream 85382 8232274 ~ 8249635 (-)
LOC120568351 LOC103362164 coding upstream 110760 8257652 ~ 8283049 (-)
G112903 LOC104931871 non-coding downstream 80199 8056602 ~ 8060033 (-)
G112902 NA non-coding downstream 94751 8044110 ~ 8045481 (-)
G112876 NA non-coding downstream 170898 7967433 ~ 7969334 (-)
G112877 NA non-coding downstream 173927 7964439 ~ 7966305 (-)
G112887 NA non-coding downstream 214040 7924102 ~ 7926192 (-)
G112922 NA non-coding upstream 63935 8210827 ~ 8211057 (-)
G112924 NA non-coding upstream 65228 8212120 ~ 8212771 (-)
G112923 NA non-coding upstream 69017 8215909 ~ 8219170 (-)
G112980 NA non-coding upstream 307599 8454491 ~ 8454705 (-)
G112984 LOC104949840 non-coding upstream 350841 8497733 ~ 8497975 (-)
cdh6 LOC103366829,LOC104926815 other downstream 976562 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 1150110 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1403720 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 1961346 6172281 ~ 6178886 (-)
G112328 NA other downstream 2287785 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 340575 8487467 ~ 8487539 (-)
G113070 NA other upstream 633560 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 967492 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1253895 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 1893794 10040686 ~ 10267078 (-)

Expression


Co-expression Network