LOC120568280 (LOC104938035,LOC103362163,LOC102210891,LOC102784122)


Basic Information

Item Value
gene id LOC120568280
gene name LOC104938035,LOC103362163,LOC102210891,LOC102784122
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8150224 ~ 8158788 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815674.1
CCTCATCCAATTGGCGACAATCTGTGTGACGTATACGGATGTaaacagagcagagcagagtcGTCCTACCGCCGTGCATGCAAGGGAAGGAAGCGAAGATGAGGGTGTCCACCAGTCATCTCCAGCAGCTCGCCATCTTCACAACCGTGCTGACCGGGGGTGGGATCGGCACCATGTACTATCTGCAGCAGAAGAAGTTTGCTGAGTCAGACTACCACAGACTGGCTCTGCAGAAACTGGAGGCATGTCCAGTTGCCATGGAAAGCCTGGGCGCCCCGCCTTTAAAAGTCCACAACATCCATCTGAGTGACAGAAACAACCGCATAGATCAGCGCACTGCACAGATAAAGATCCCTGTGACTGGTTCACAAACTGGAGGTTATCTGTATACGTCTTCAGTCAGAGACCCTGACACCAACAGGTGGAGTCTGAAACAGGCAGTTCTGAAGCTCAAGGAAGGGCAGATCATCGACCTGCTGAATCCTCCTCCGCCTGCTGCAGCACAGACCCAGGCGCACACACAGGGGGAAGACATGGACCACTGGCACTGACCAACTCCACGCACTAATGAGAACAATGAAAGTGGAAGTCGTCCTGCTCCCACTGGTGTTGAGTCTAATTAACCAAAACAATATGGAAGTATATATTTACCAAATCCTCAACTTTTGAAGAGACAGCATTTACTCGTGACTCTCTCTGTGAGCGTCACTGGGCTTCTAACTGACTGCTCTGGATTGTTTGCTGTCCAGGTTTGGCTTTGATTTAATACAGGCCTGTTGTTGCACTGA

Function

NR:

description
PREDICTED: cytochrome c oxidase assembly factor 1 homolog

GO: NA

KEGG:

id description
K18173 COA1; cytochrome c oxidase assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815674.1 True 788 mRNA 0.51 5 8150224 8158788

Neighbor

gene id symbol gene type direction distance location
ccr12a LOC101473018,LOC104945947 coding downstream 3332 8140232 ~ 8146892 (-)
cntnap2b LOC101476225,LOC102211470 coding downstream 13667 8103401 ~ 8136557 (-)
LOC120567605 LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359 coding downstream 64298 8079296 ~ 8085926 (-)
tmem70 NA coding downstream 82775 8063083 ~ 8067449 (-)
LOC120568123 xpr1,LOC101080083,LOC103396762 coding downstream 127318 7971949 ~ 8022906 (-)
LOC120569115 LOC103362161 coding upstream 19497 8178285 ~ 8187676 (-)
tgs1 tgs1,LOC106942483,LOC106912366 coding upstream 30615 8189403 ~ 8203101 (-)
xkr4 xkr4 coding upstream 73486 8232274 ~ 8249635 (-)
LOC120568351 LOC103362164 coding upstream 98864 8257652 ~ 8283049 (-)
LOC120568719 LOC103362165,LOC102298204,LOC100711787,LOC101471174,LOC102214684 coding upstream 126142 8284930 ~ 8313389 (-)
G112903 LOC104931871 non-coding downstream 90191 8056602 ~ 8060033 (-)
G112902 NA non-coding downstream 104743 8044110 ~ 8045481 (-)
G112876 NA non-coding downstream 180890 7967433 ~ 7969334 (-)
G112877 NA non-coding downstream 183919 7964439 ~ 7966305 (-)
G112887 NA non-coding downstream 224032 7924102 ~ 7926192 (-)
G112922 NA non-coding upstream 52039 8210827 ~ 8211057 (-)
G112924 NA non-coding upstream 53332 8212120 ~ 8212771 (-)
G112923 NA non-coding upstream 57121 8215909 ~ 8219170 (-)
G112980 NA non-coding upstream 295703 8454491 ~ 8454705 (-)
G112984 LOC104949840 non-coding upstream 338945 8497733 ~ 8497975 (-)
cdh6 LOC103366829,LOC104926815 other downstream 986554 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 1160102 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1413712 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 1971338 6172281 ~ 6178886 (-)
G112328 NA other downstream 2297777 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 328679 8487467 ~ 8487539 (-)
G113070 NA other upstream 621664 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 955596 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1241999 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 1881898 10040686 ~ 10267078 (-)

Expression


Co-expression Network