LOC120568294 (LOC104961359,LOC103353055,LOC100705071,LOC102788160)


Basic Information

Item Value
gene id LOC120568294
gene name LOC104961359,LOC103353055,LOC100705071,LOC102788160
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18236790 ~ 18244258 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815702.1
AGGATTCCAATTAATAAACCTCTTAAAACCTTTGGTTTACTACCATTCCCCCGCAAGCTTTGGTGTCTTGTGTGGTTAAGGAGAGTTTTGTCAGGACAGAAAGAGATTACATGTGCTTGTTGCACAGGACTCCAACGGTAGGTCCTTGCTCACTTGTGTGCAGGGGATTTCAAGGACTTAACTGAGAGTAACAAGTGCCTACAGTAGATATTGTCAGTGTTATTCGTCTTCTTATGGACTACAGAGAGACACCATGTAGTAGTAGGAATCTGTGGTAGGAATCTGAAAGAAGATGTGACTTTGTTCTGCTTTAATGTAAACTATACATTGAGCCTCACTGAAGAGATCCTTGAAGGATACGGCCCTAACGCTTCACATAAATCTCCTCCATTGGACGTGAACCAGAACAACAGCTCTGTACAACAACTGTTTTGCCTTGTCTTACTtggtagcattttttttttgctttttctgacaAAGAAGAGAGAAAGTGTCTCAAAAGGCTCGTATGCATTTGTCAATGGATACCCTGGGAATAGTGGACGATAGTTGTCTCAACAACTATGACATGGCAAAAGGTGCTGGGTCAAGCGGTGGAGGCAGGGTCCACAGTATTGATGTCATACTGGGATTCACTAAAGACCAGGACCCTTTACTCCATTCGATAGGCGAGGATGACAGGCAGCAAGCCAACGGAGAAAACCCACAATACCCTGACAAGCAGGTTCTGTCGGACCCCTATGGGCACCTTCCAGAATTGGGTGATAGTTCCCAACATTCTTCCTACCATGAATCGGACCTTTTCTCTGGTGACAAGTGTGATGAAGAAATGAGCAACCCGCAGAAAGAAATGGATGTTGCAGAGGGGTCTCCGGAGGCCATTACAGAGGAAGagcacaccaaaaaaaaacacagaagaaatcGTACCACGTTCACCACCTATCAGCTTCATGAGCTGGAACGAGCCTTCGAGAAGTCCCACTACCCAGACGTCTACAGCCGTGAGGAGTTGGCAATGAAGGTTAACTTGCCTGAGGTTCGAGTTCAGGTGTGGTTCCAAAACCGAAGGGCCAAGTGGAGACGACAAGAAAAGATGGACACCAGCACCATGAAGCTCCATGATTCCCCCATGCTATCCTTCAATCGTCCTCCGATGCCAGCTAGCGTGGGGCCGGTGGGCAACCCGATGCCACTAGATCCCTGGCTGACCTCGCCCATCTCCAATGCCACAGCCATGCATACCATCCCAGGGTTTATGGGTTCACCACAGGGCCTGCAGCCTGCCTATCCAAGCCACAGCTTCCTCAACACCCCAGCTGGCATGGTCCAAGGTATGCAGCCAATGGGCCCTCCTCCCTACCAGTGCCCACTCAGCTTCAACGATAAATACCCGATGGAGGAAGACAGAAGTTCAAGCATCGCAGCACTTAGGATGAAGGCCAAAGAGCACATTCAGTCAATGGATAAAACCTGGCAGCACATGTGATGTGGCACTGTAGAAGGACTTTTGAGCTGCTCCCGTGAATGTTTACAAACTGCTTTTCCACTGTTTGTTTCATGTACCCATGGCGAGGATACATGACACCAAACGagtcagacattttttttccactgacaCCATTATGCAACTCTGAAAATAAACTTcttgtgatgaaaaaaaaaaaagataaaaatgttaaaattagcAAAACTCTGGGGGTCATTTATTTTGGTTTAGCTCCAAAGGTTTGTGAATAGACTTGTTTAGAGAACATCCTCAACATAAATTTAGCAAATTTCTGATAAATTGTGCAGACCGTGCTGACAAACTGTATTACATGAGAGGCTAAGCAGAGCCACGTGGTCAGTAGTAGCAACATTGAGGGGTTTCCTTTTTTgtggaaataaaatatttacaaaaaatgaaatattgacCCTAACTCTCTCTACACGTATCTGGGTGTATGTTTTTCCTGCTACCCTAAAGTCAGAATATCTTTATGAGGTTTAACAAACACTGTGCTGTGCTTTGGGCATTTGCTGGTATCTAGATCTTTAGAAACAGACAATTTTTGTAtaaattgtacaaatttgtttaAGGAGGTTTTTCTTCTTGTGTGTTTGGTTGGGTTTTCTCTTGGTATTTGTACATACTGTCAAACATTTTCTAGTATATTTTCAGGTCCTTTGTAAGTGGGCacaaatgtgtattttaaaGCCCACTTAAATTTAAGTTTGATTAGGTTTAAAAGTGATAAGTGTGTGTCTTATTTTAATCATTAAACCGGCCTTTTGGAGAGCATTGAGCCCTGATGGGAGAGGTTATCGGAAGTCACAGAGCGTAATCTGGCTCAGAGGCTAATTTAAACAGACAAGCATACCTCTTAACACCTAATTACTGCTTTTAAAGCGATTAACCCCAGATTCTCAGCCAGAGACAGAATACCCTCAGATGCCCCTGAAATACGCTTTCAAGACCTGATTAACTTTACCACTCCCCTCAAACTTGACCATTTATATTATTTCCAATTTACAGATAAGGCACAACatatcagttttttatttttcattatgcCCTGTCTTAATCTTAACCTTATTGGTAAAGATTGCTCTTCATTGCGTTTTTGACAAAGCATTCACTAAAGACAGGTGTGTCAAGAGTGAGAAAGTTAAAGGGTGCTGGCAGCCTCTTACCCCTGGAAGAAGCAGTTTGATGTAACTGTTGGACAATAACTAGAAGGAAATTACGTTACACTGACCATTGCCATGATAAAATTGCTTGTGTGTTTTATACTGTATgctatttggtgtgtgtgtgcattcaaaTTATGCAAAAGGACACTGGGCTAGCAGAGTACATTTTCCTATAATAATTTTCTCTCTGGCTCTTGAAagacaacaaaataacaaaaataatgtgTTCTTAAGTTGGTGTTGTAATTACCGACCTAAAGTGATACTGTGGCAATGCTTTGAGGGAAATGGACACTAAGATGAAGTGTAAGGAAGAGTTATCATTTACATCACTAAAACATTATCTTTATATCATGGCCTTTAGAAATGACAGCATACACACTGTCAGTTTTATAGGTTGTAATCCCTGTTAACAGTGGACTAAAAAgccaaagaaataaaaaatatttttgtattactAGACGACACATTTATACATGTGTTAGGGATGtttattagtttttaaaattattataaCTCATTTCTAGTCCTTTACATTTTTTAGAATGTGACTTTCATTTTCCATGTGCAAAACAGAATAAAGTTACAGTAGCACCACTGTAGAAGCACTTTGA

Function

NR:

description
PREDICTED: retinal homeobox protein Rx2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815702.1 True 3287 mRNA 0.41 4 18236790 18244258

Neighbor

gene id symbol gene type direction distance location
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding downstream 61464 18171649 ~ 18175326 (-)
LOC120568287 LOC103353056 coding downstream 66301 18151116 ~ 18170489 (-)
LOC120568865 tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184 coding downstream 166353 18060695 ~ 18070437 (-)
ranbp3b ranbp3 coding downstream 216894 17999900 ~ 18019896 (-)
cdcp2 cdcp2,LOC103375059 coding downstream 645425 17583790 ~ 17591365 (-)
LOC120569106 NA coding upstream 56154 18300412 ~ 18306617 (-)
phc3 NA coding upstream 264197 18508455 ~ 18521023 (-)
gpr160 NA coding upstream 359049 18603307 ~ 18604790 (-)
sec62 sec62,LOC102781860 coding upstream 384716 18628974 ~ 18646415 (-)
samd7 samd7,LOC102781561 coding upstream 402823 18647081 ~ 18655196 (-)
G115691 NA non-coding downstream 2275 18232868 ~ 18234515 (-)
G115644 ap1m1,LOC107750937 non-coding downstream 152946 18081198 ~ 18083844 (-)
G115641 NA non-coding downstream 159731 18076540 ~ 18077059 (-)
G115640 NA non-coding downstream 160378 18075068 ~ 18076412 (-)
G115624 NA non-coding downstream 269098 17965813 ~ 17967692 (-)
G115710 NA non-coding upstream 15666 18259924 ~ 18260284 (-)
LOC120568297 LOC101477959,LOC103353052,LOC102786864,LOC103479784 non-coding upstream 26076 18270334 ~ 18286055 (-)
G115722 NA non-coding upstream 51304 18295562 ~ 18295788 (-)
G115738 NA non-coding upstream 134142 18378400 ~ 18385959 (-)
G115782 NA non-coding upstream 209775 18454033 ~ 18456002 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 178631 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 1127886 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1191728 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1424872 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 1596978 16637108 ~ 16639812 (-)
sppl2 sppl2b other upstream 236412 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 458806 18703064 ~ 18720587 (-)
G115941 NA other upstream 600647 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 687716 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 977533 19221791 ~ 19222726 (-)

Expression


Co-expression Network