LOC120568298 (LOC103353952,LOC100690840,LOC102305671)


Basic Information

Item Value
gene id LOC120568298
gene name LOC103353952,LOC100690840,LOC102305671
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17097270 ~ 17139546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815706.1
TTTTTCTGCCTGCCCATGTTGAGCTGGGAGATTAGAGCAATCAGATTAGGAGTGCTGCTGAcctgcaggcagaggagagcGAGAGTGGGCAGCTCAGTCATACAGAGCTCTTTCTACCTTGCTCAATGTTTTCCACTACTTCAGTTTGTTTGTGAACCTGTTTCCCTAGATGTCGGACGACTTTTATATCATTCCATAAGAGGTTTGTCACAGTCTGATGACCCCTTCCAGGGGCAAAGCTGCGGAGCAATGAAGACAGGCTCTCAAATCCGCCTGTTGCTGTGGAAAAACTGGACCCTCCGCAAGAGACAGAAGGTCCGCTTCCTGGTTGAGATCTGCTGgcctgtgttgttgtttgttgggCTGGTGTGGCTGAGGAAGGCCAATCCACTGTACCAACAACATGAATGTCATTTCCCCAACAAGGCCATGCCTTCAGCAGGGATTCTGCCCTGGATCCAGGGCATCTTCTGCAACATCAACAACCCCTGCTTCAGATATCCAACCAGAGGAGAGTCTCTGGGCGTTGTCTCCAACTATAACAACTCAGTATTGGCACGGTTCTATGTTGATGTCCAGGAGCTTCTGCTCAATGAGGCAGAGGTCCAGCAGCTCGGCCAGCTTTGGCATGAAATGTCCTCCTTCTCAAACTTCATGGAAACGTTACGCACCAACCCATCTATGGTGTCAGGCCGTGGGCTGAAGATAGATGATATTCTGAAGGATGACGAGGTTTTCACGGCCTTCCTTTTGGAAAACGCCAACCTCCCGGAGTCTATAGTCTACCAGCTCGTCAATGCAGAAATACGACTCGAACAGTTTGCCTTTGGTATCCCAGAGCTGCAGCTGAAAGACATAGCCTGCAGCCAGGCCCTGCTGGAGCGCTTCATCATCTTCCCCAGTCGCATGGGACTCCACGGGGTCCGCAACGCCATGTGTGCCCTCAGCCAGCAAAGGCTGCAGAAGATAGAGGACGTCCTCTATGCTAATCTGGACTTCTACAAAATCTTCAAACTAATGCCTAAGGTTATGGACAGCAGGTCTGAGGGGATTGACCTGCACTTCTGGGGGCGGGTTCTTAACGCGACGTCGGGCAAGATCCGAGTTCTGATGGAGCGGGAGAGCTCTCAGGAGCTCCTAAAGGCGGTTTCTTCTCTGTTTCAAGCCGGGGatccctcctcattcccccagATGATGTCCACTGTGTCGAGCCTCTTCTGTGGATACCCAGAGGGAGGTGGCTCCAGGGTCTTGTCCTTCAACTGGTATGAGGACAACAACTACAAGGTGTTTCTGGGGGTCAACGGCACCAAGAACCATAACTATGTCTATGACGACTCTGCCAGTCCGTCCTGCAACGCCCTGATGCAGACCCTGGAGTCCAACCCTGTCACAAAAATTGTGTGGAATTCAGTCAAGCCCCTGCTGATGGGAAAGATTCTGTACACCCCCGACTCCCCTGCCGTCCACAAGATATTAAAGAGTgCCAACACAACATTCGAGGAGTTAGAGAGGTTGCAGAACATGGGCAAGGCCTGGGAGGAGTTGGGACCTCAGCTCTGGACTTTCTTGGACAACAGTGTTCAGATGCACATGATCAGGGACACGCTGAGAAACCCGACAGTGATGCACTTCATGGACAACAGTCTGGAGGACACTGACTTCACCACCAAACACATTCTTAACTTTCTGTACAACGGTCCAGAGGAATACAGGGATGCTGACATGCCCAACTTTGACTGGaggaacatttttaacattgtcgaCCAGATCATACGCACGTTCAACAAGTATGGAGAGTGCATCAATCTGGATAAGTTTGTGGCTTACACGGATGAGTCCCAGATGACCCATCAGGCCTTGTACCTGCTGGAGGAGAACAAGTTTTGGGCAGGCGTGGTCTTCATGGACATGTTTCCCTGGACCACAAGTGTACCCCCGCATGTCAAATACAAGATCCGCATGGACATTGACGCAGTGGAACGCACCAACAAGATCAAAGACAGGTACTGGGACCCTGGCCCCAGAGCAGACCCCATAGAGGACCAGAAGTATATCTGGGGAGGCTTTGCCTACCTGCAGGACATGATTGAACACGGCATTATCAAGATTCACACAGGCAATGACTGGCCACTCGGCATCTACGTCCAGCAGATGCCATATCCGTGCTATGTAGATGACCTcTTCATGATCACACTGAACCGCTGCTTTCCCATGTTCATGGTGCTGGCCTGGATCTACTCTGTGTCCATGACTGTGAAGAGCATTGTGCTGGAGAAGGAGCTGCGCCTCAAAGAGACCCTCAAAGCCATGGGGGTGAACAACGGAGTCATTTGGTACACAGCTTTCGTCGACAGCTTCATCATGATGACTGCAAGTACGGCGCTGCTCACCTCTATCGTCATGggTGGAAAGGTGCTGAATTACAGCAATCCCATCCTGGTCTTCTTTTTCCTGCTGACTTTCACCGTTGCCACCATCATGCAGTGTTTTCTGATGAGTGTGTTCTTCAACAAGGCCAACCTGGCAGCCGCCTGCAGCGGCATAATCTACTTCACCCTCTATCTGCCGCATATCCTCTGCTCTGCCTGGCAGGACCGCATCACCAAGAACATGAAGTTGGCTGctAGCTTGCTGTCTCCAGTGGCCTTTGGCTTCGGCACAGAGTACCTGTCGCGGTATGAGGAGCAGGGTTTGGGTCTGCAGTGGAACAACATCATGACCAGCCCGTTAGAGAAAGACACCTACTCCTTCCTCACCTCCATCCTGATGATGGTGTTTGATGCTGTCCTCTATGCCGTCCTGGCCTGGTATCTGGATAATGTCTTCCCAGGACAGTATGGGGTTGGTCGACCATTCTACTTCCCATTTCAGTCCTTATACTGGCAAACATCTGCACCCTCACACATAGAAATGGCTGCTCAAGATCCTGAGAAACCTGAACCAGACAACGTTGAGAAGGATGTTGAGGGCAGGAGCACCCCAGAGACATACACCTGTAATGGTTCAGCCAGCAGGAAAGCCTGTAAGCACCAAAGTAAGAGGGATcaactggagagagagagggagctgcTGAAACGACAAGAGAAAACACTAGTCCAGGAGGAGGAGTGTCAGGACTTAGGAAGGGAAGGCCAGTTGTTCTTCGAGACCGACCCATTGGGCCTGGTGATGGGGGTGCAGATTCAGGACCTGGTGAAGGTGTTTGATGGAAGTTCTCGTCCAGCTGTCAACTGTCTCAGCATCAATTTCTATGAAGGCCAGATCACATCCTTCTTGGGGCACAACGGCGCTGGAAAAACCACCACTATGTCCATCCTGACTGGCCTGTTCCCTCCGACATCTGGCACAGCCTACATTAATGGAAGTGACATAAGGACTGACATGGACACCGTCCGCTCCTCCATGGGGATGTGCCCTCAGTACAACATCCTCTTCAAACATCTCACAGTGGAAGAGCACATCCTGTTCTACTCACTGCTGAAGGGTCGGACTCAGGAGGAGGCGGAGAGGGAGGTCGAGGACATGCTGGTGGACCTCGGGCTGCCTCACAAGAGAGACGACGAGGCTCAAAACCTCTCAGGCGGTATGCAGAGGAAACTGTCAGTTGCCATGGCGTTCGTTGGAGGATCAAAGGTCGTGATCCTGGACGAACCCACCTCAGGAGTGGACCCCTATTCCAGGAGATCAATTTGGGACCTCCTACTAAAATACCGGACTGGCCGGACAGTGATTCTGTCCACTCATCACATGGATGAGGCCGACCTGTTGAGTGACCGCATCGCCATCATCTCCAAAGGACAACTCCACTGTTGCGGATCTCCCCTCTTCCTCAAGAACAGTTTTGGAGTTGGTTTCTATTTGACACTTGTACGGCGGATGAAGGATCTCAAGAAGAAGGAGAATGATTGTGACTGTGCCTCAGACTGCTCCTGTGCCTGCTCCATCTGCACCAGTTACAAAGATCAGTCTCAGAACCAGTCCCAGCAAATAGACAGAGCTCTGGATGGAGATATAGACAGCATCACTAGCCTCATCCACCACCACGTCCCCGAAGCCACATTGATCGAGATGATTGGCCAGGAGTTGACCTATCTGCTCCCTAGTAAGGGCTTCAAACATCGAGCGTATGCCAGCCTGTTTAGGGAGCTGGAGGAGACGCTTGCTGACATGGGCCTCAGCAGCTTTGGCATCTCTGATACATCACTAGAGGAGaTCTTCATAAAGGTCACTGCCGATGGAGAAGCAGCGAATAATGCCTCCCCTCCTGAACAGTGGACGTTACAGCGGATAAAAAGCGACAGCAAAGTTGGTGTAGAGGGAGATGAAGAACATAATGGTGTGATGCAGAATAATGGCATTACCCATGGTGCATCAGACAACAGTGCAGGAAAGGGCTCCAGGCAGGTGAAAGGGGCCTCTCTGACCTTAAAGCAGTTCCATGCGCTACTAGTGAAGAGGTTTCACCACGCCATAAGAAGCCAGAAAGACTTCCTGGCACAGATCGTCCTTCCTGCCAGTTTTGTCCTAATAGCTCTGATCTTCACGAAAGTCGTTCCTCCATTTGGAGAATATCCAAGTCTGACTCTGACCCCCTGGATGTACGGACAACAGTTCACCTTCTTCAGTAACGAGCAACCGTTTGACCCCAAAATGAAACGCTTCACCGAGCGCTTACTGAACAGACCAGGCCTGGGGACACGCTGCATGGAAGGAGAGCCACTAGAAATGCCCTGTAGTAACAGCACATCAGAGTGGGAGAATCCTGACATCTCTCCTGTGGTCAGCAACATCTTACAGAGTCCTGAGTGGAACCAGAGAAACCCGTCTCCTTCCTGCCAGTGCAGCACCAGTAAGAAGCTCACCATGATGCCCATCTGTCCCATCGGAGCAGGAGGCCCGCCCCCTCGCCAACGGATCGAGGCCACGGGAGACACGATGCTGGACCTGACAAACAGGAACATCTCTGACTACCTGGTTAAAACCTACCCCAGTCTCATCAGAACCAGTTTGAAGAGCAAATACTGGGTTAATGAACAAAGATATGGAGGTCTGTCAATAGGAGGACAGCTTCCCATCCTGGATGTTAACCCCGAAGACATCCAGGATGCTTTCCACCAACTGGGAAAAATGCTCAACATCACAGCGGGTTACTATTCTGGACTTGCACTGAGGGAGACTGGTCCTTTCTTACGATACATGGAAAGTGAATTCAATATAAAGGTATGTGTAGGATGGATAGATATGGATACTTATGAATGTATTGCttccccttttatctataaaaaaattttgaaaaaaaaaaatttttttgtggAGTTTGGCATCACCGCCATCAACCACCCCCTAAACCTCACCAAAGAGCAGCTTTCTGAGGTCACAGTGTTGACCACTTCAGTAGACGCCGTGGTGGCGATCTGTGTTATTTTCGCCATGTCCTTCATCCCTGCCAGCTTCGTCCTCTACCTCATCCAGGAGCGTGCGACCAAGGCCAAGCACCTGCAGTTTGTCAGCGGGGTCAGCCCTTCAGTGTACTGGGTAGCCAACTTCTTCTGGGACATGGTTAACTACTCTCTCAGCACTGCAATGGTGGTTGGCATTTTCATGGCTTTTGATAAAAAGTGTTACACATCACCATCCAACCTGCCAGCACTGATAACACTGCTTCTACTGTATGGGTGGTCGGTGACGCCCATGATGTACCCCATGTCCTATATATTCAACATCCCAAGTACTGCATATGTGTCTCTGTCCTGCATCAACCTGTTCATAGGCATCAATACCAGCGCCATCACCTTCATTCTGGAGCTTTTTGAAAACAATCAGTCTTTGCTGACATTCAATGAGTGGCTAAAGAAAGGCCTGCTGGTGCTACCTCACTTCTGCCTGGGGCGAGGACTGATAGACATGGCCATGAACCAGGCTGTGACTGATGTTTATGCCAGATTTGGCGAGGAGTACACACAGGACCCTTTCCGGTGGGACTTTGTGGGGAAAAATATTGCTTTCATGGCAGTGGAAGGCTTTGTCTACTTTATTCTCAATCTTCTCATCCAATACCGGTTCTTCTTGGACCACTGGTTATCAGACTACAAGCAGACTTCAATACGAGATGAGGATGGTGAAGTGgcagcagagaggcagagaaTTTATAATGGAGGGAGCAAGACAGACGTCCTGCAGATCAGAGACCTCTCTAAGACGTATGTGGGCAGGAAGAGGGCAGCTGTGGACCGGATATGTGTGGGAGTCCCTGCAGGAGAGTGCTTTGGTCTTTTGGGAGTTAATGGAGCTGGAAAGACGACAACCTTCAAAATGCTGACTGGTGACACAGATGTCAGCTCCGGTGAGGCTACTGTGGCTGGTTACAGCATCCGGACAGAGATTCTGGACGTGCACCAGAACATGGGATACTGCCCTCAGTTTGATGCCATCGATGAGCTCCTAACCGGCAGGGAGCATCTGTACCTCTACGCTCGTCTCAGAGGGGTACCTGAGTCTGAGATCCGCAGAGTGGCAGAGTGGGGTATCCAGAAGCTGGGTCTGACAGAGTATGCCAGCCGCTGTGCAGGGACATACAGTGGCGGCAACAAGCGCAAACTCTCCACAGCTATCGCAATGATTGGTTGCCCAGCGCTGGTGCTGCTGgaTGAGCCCACGACGGGGATGGACCCCCATTCTCGACGCTTCCTGTGGAATGCCATCATGAGTGTCATCCAGGACGGCAGGGCCGTGGTGCTAACATCACACAGCATGGAGGAGTGTGAGGCCCTCTGCACTCGACTGGCCATCATGGTCAATGGGACTTTCAAGTGTCTGGGTACCATCCAGCAACTCAAATACAAATTTGGTGACGGCTACGTAGTGACCATGAAAATCAAGGCAGCTAAAGTGGGCTTGCCCCCAGATCTGGAGCCCGTCGAGAGCTTCTTGGAGAGCAGCTTCCCCGGCTGCGTTCAGAGGGAGAAGCACTACAACACGCTGCAGTACGAgatcgcctcctcctccctggcCAGGATATTTCAGCTGGTGGTGGCCAATAAAGAAAGGCTCAGCATCGAAGACTACTCTGTTTCCCAGACAACACTGGACCAGGTGTTTGTCAACTTTGCCAAGCAACAGACAGGCGAGGACgaagacattacattacacagaCGAACAGCGGGTGGAAGAAAAGACATCAAGATCTCTCCAGTGCAGaggaaaacatgaaaatattacCGGTAAATATACAGAAACACAGATGTGAAGGTGTCACTCTGCAGGGCAGCGATATAACTTTTCACATTCCACAATTTAAAAGGTACTTTCAATATTTCACTAGCCAAATTTCTTTTTAGGGTAGAGCCAAGCATGACCAGTTAACCTGCCAAAGTGACTGGTAGAACAATTAATGTTTCCAGCCACAGACAAACTTAACAGGACTTTATCTTCCACGATGTCATCAAAAACCAAGCATGTCTGACACATTACTTAGACTTGAAATGATATGTGTTAACAGCAGTTTGATGCAAAAACAGCTGGTTCTTCACCTGAAATATGTAAAACAAAACTGATTGACTAGCTTGTATAAGTCAATCCAAtctgtacatatatatgtaaTGAATACATAAGCACCTTAGaagcagtattttttttatatttacattaaCGCACACACCTCAATTTTATGTGACACATGTAAACAAATGTCATTAATGTTGGTTGtctatttgttttccaaaacacATTTACTAAGCAATAGTAAATGTGTCCTTTTCAGTCATTCACTGTTGTACATTTAAGTATTGCTTTGTCTGCTGTGTTTCATACATTGCCATGTTATGCTGTTCTCCAGTGTCAGTACAAAATAGCACACAATATTCTTCTTGAAGGATTACATTTGAGACAAAAGGTAATAACATAAATATATCTGTACTGTAGATAAAAAGGAATTATATTTTGTATCTGACAAGAAAAAAACTTTACCTTGCTTTATACTTTATGCTCTTGCCTAGCTGATTTGTACTGCATCATCAAtcccaaataaaaacaaagtttcATAATGTA

Function

NR:

description
PREDICTED: retinal-specific ATP-binding cassette transporter-like

GO: NA

KEGG:

id description
K05644 ABCA4; ATP-binding cassette, subfamily A (ABC1), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815706.1 True 8049 mRNA 0.49 50 17097270 17139546

Neighbor

gene id symbol gene type direction distance location
LOC120568635 NA coding upstream 1446 17064933 ~ 17095824 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding upstream 36521 17047694 ~ 17060749 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding upstream 52208 17043061 ~ 17045062 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding upstream 58166 17032876 ~ 17039104 (+)
vapal vapa coding upstream 417898 16651167 ~ 16679372 (+)
amy2a NA coding downstream 177567 17317113 ~ 17325659 (+)
dcaf8 dcaf8,LOC102795666 coding downstream 404124 17543670 ~ 17552930 (+)
lrrc42 lrrc42 coding downstream 432031 17571577 ~ 17574473 (+)
tceanc2 tceanc2 coding downstream 441113 17580659 ~ 17583761 (+)
LOC120567749 LOC103353067 coding downstream 648239 17787785 ~ 17967693 (+)
G115350 LOC104967252 non-coding upstream 275594 16760435 ~ 16821676 (+)
G115295 NA non-coding upstream 488728 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 665615 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 718751 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 828441 16262657 ~ 16268829 (+)
G115404 NA non-coding downstream 18082 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 29027 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 43606 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 65117 17204663 ~ 17210211 (+)
G115446 NA non-coding downstream 78364 17217910 ~ 17224738 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 485064 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 569588 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 868719 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 1175739 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 1254176 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 266951 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 887734 18027280 ~ 18029895 (+)
G115729 NA other downstream 1165603 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1427087 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1520883 18660429 ~ 18674140 (+)

Expression


Co-expression Network