ss18 (ss18)


Basic Information

Item Value
gene id ss18
gene name ss18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23177741 ~ 23189571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815740.1
CGAAATTGAATCCTATTCTGAACTGTGTGATCTGAGTTCTACCGATTTGTTAAGTGTGTTAGCTACTTTTGACTTGTATGTCTAGTTCACTTTAATTTCATAGAGAATCACCATGTCGGTGGCGTTTGCACCTCACAGGCAGCGTGGGAAGGGTGACATAACACCCGCTGGAATACAAAAGTTACTTGACGAAAACAACCAGCTGATCCAGTGTATAATGGACTTCCAGAGTAAAGGCAAAACAGCAGAATGTTCACAGTATCAACAGATGCTGCACAGAAATTTAGTGTACCTGGCCACGATAGCAGACTCCAATCAGAACATGCAGTCTCTCCTCCCTGCTCCACCCACTCAGAACATGCCCTTGGGCCCTGGTGGGATGAACCAGAGTGGGCCCCCCCCTCAGCCTCCTCATGGTCACAACATGCCCTCTGAGGGTATGGTCAGCGGTGGCCCTCCAGCCCCACACATGCAGAACCAGATGAATGGACAGATGCCTGgGCCTAATCACATGCCCATGCAAGGTCCCGGTCCAGGTCCCAACCAGCCCCCAAACATGCCCAGTGGCTCTATGAATATGCCCCCCAGCAGCCATGGTTCAATGGGTGGTTACAATCACACTGTCCCTTCTTCCCAGGGCATACCAGCTCAGAGCCAAATGAACATGACCCAGGGCCAGCCCATGGGAAACTATGGGCCTCGGCCAAACATGAACATGCAACCCAGTCAAGGCCCCATGATGCACCAGCAGCCTCCCACTCAGCAGTATAACATGCCTCCTGGTGGTGGTGGACAGCACTACCAAGGGCAACAGACCCCAATGGGCATGATGGGCCAGGTTAACCAAGGGAACCATGTCATGGGGCAGAGGCCAATGCCCCCCTACCGACCCCCACAGCAAGgaCCCCCTCAGCAGTACCCAGGGCAGGAAGACTACTATGGGGACCAGTACAGTCACGCAGGACAGGGAGCCTCAGAAGGTAATGCCCAGTATGGCCAACAGCAGGAAGCATACCAGCAAGGCCCTCCGCAGCAGCAGGGCTACCCTCCTCAACAGCAGTACCCGGGTCAACAGGGCTACCCACCACAGCAGCAGGGTTACGGTCCTGCCCAAAGTGCCCCAGGACAGTATCCCAATTATCCTCAGGGGCAGGGACAACAGTATGGGGGCTATCGCCCTCCCCAACCTGGACCCCCACAGGGCCAACAGCAACGCCCCTATGGCTATGACCAGGCCCAGTATGGAAATTACCAGCAATGAGAGATGGTCACATCAACCCACACAGCTCTGCTCTGATCTCTGTCTGAGCTTTGACCTCTGGTCAGCTGCCAAGCAGACTCAAATGATGGTTGTAGCTCACTGAGATTGTCTCAGACACGAACATGCAACactcaaaaatacaaaatacgtTTTCCCCTCTCTTTGGGCTCTTATCCAATGcctataaaatgtatttttctcatGTACATTGACTTGATACAAGTCCATGACTCACCCTCTGGTCCAGTATGTCTCAAAGCAGCAATGCCTTAAAAATGGAACTGCCTTATCCTTTAGCATTGCAGATTGTGAAACAAAATTTTGGATATCAGagataaatgtaaatgtacagtTTCAATCTACTGTGGTGCATTGTTCCTCTATCCTTCAGCTCCTTGTTCATAAGAAGCAATAATGCCAGCAGTAGGGAAATGTGTGGGGGCTTGGAGATGAAATAATGCACCAGACGAACTTCCCGCTAGGCCATGGTACGTGTCTtgatgtatgtgatgatgtaaaaatatattttatgctTTTTAGATCAAAATAACTTTGTATAAGACATTGGAAACTAGTACTAAAGCGGTGTTGTTTATTTCATGTGTATgtgtcaatgtttttttttttttttttttgtaatgatcCCATCCagcatattgttttattttttatttttgttgtgttgAATTGTATAACTATTCAATTGGATCTGCTACGTCTGTGACATGGGCACTATGAATTATTTGTGTAAAAACAGAACATTAATTGACATGCAAAGAAATTCCTTGAAGGACAAAAAACATACATCATACCTGGAATTAGAAAATGTTTAATGTCTGAAAACGCAAGAAACAATTGCTGTATTCTTTGTTAAGCTGTGTATTTAAatctgtgagaaaaaaaatctatatcaaatttcttttttttttttttaaaccacataACCTGAAGGTATAAGAATAATGGCCactggcctttatttgacaaatGTGCCCAAAGATGTAATATGTAGCAGAAGCCACTGCAAAGTGTAAGTCATTGCTCTCTggagtttttttcttcttctatacAAGCACCTCAGTCTTGTCCGTTGACTGCACATTGGTGAATGGAAAAGATCAAACTTGGTATAATAAATGTTTCTAACAAGTATGTTGTTTTGTTAGTCTTGACTTTGCTGGAATCCCCTTTTCCCTTTTGAATAAACGTCTAAGTTGATGTCATTCAAATGGTGTTGTGTGTGAATAATAAAGATTGTTACTGTCAAATATGTAACATAAGATGTGAAAATAATGTTCTCAAATGGATTCCTTAATTTTACAGTAAAGACTGGTTGTGCAGTTTTATATCACTGGCTTGATATCTGTTTTATGGtgcatactttattgatcccataTGTAcagcagcattaaaaaaaaggaattcaTTGTTTATGGCAGTTTTAATATTTGGCATTCTGCACCCCATCCAAGTGGTCACATTTGTGTCATGACAATGTATAACTGTACATTACAATAAATTGGAAGaatctttaatata
>XM_039815741.1
CGAAATTGAATCCTATTCTGAACTGTGTGATCTGAGTTCTACCGATTTGTTAAGTGTGTTAGCTACTTTTGACTTGTATGTCTAGTTCACTTTAATTTCATAGAGAATCACCATGTCGGTGGCGTTTGCACCTCACAGGCAGCGTGGGAAGGGTGACATAACACCCGCTGGAATACAAAAGTTACTTGACGAAAACAACCAGCTGATCCAGTGTATAATGGACTTCCAGAGTAAAGGCAAAACAGCAGAATGTTCACAGTATCAACAGATGCTGCACAGAAATTTAGTGTACCTGGCCACGATAGCAGACTCCAATCAGAACATGCAGTCTCTCCTCCCTGCTCCACCCACTCAGAACATGCCCTTGGGCCCTGGTGGGATGAACCAGAGTGGGCCCCCCCCTCAGCCTCCTCATGGTCACAACATGCCCTCTGAGGGTATGGTCAGCGGTGGCCCTCCAGCCCCACACATGCAGAACCAGATGAATGGACAGATGCCTGgGCCTAATCACATGCCCATGCAAGGTCCCGGTCCAGGTCCCAACCAGCCCCCAAACATGCCCAGTGGCTCTATGAATATGCCCCCCAGCAGCCATGGTTCAATGGGTGGTTACAATCACACTGTCCCTTCTTCCCAGGGCATACCAGCTCAGAGCCAAATGAACATGACCCAGGGCCAGCCCATGGGAAACTATGGGCCTCGGCCAAACATGAACATGCAACCCAGTCAAGGCCCCATGATGCACCAGCAGCCTCCCACTCAGCAGTATAACATGCCTCCTGGTGGTGGTGGACAGCACTACCAAGGGCAACAGACCCCAATGGGCATGATGGGCCAGGTTAACCAAGGGAACCATGTCATGGGGCAGAGGCCAATGCCCCCCTACCGACCCCCACAGCAAGgaCCCCCTCAGCAGTACCCAGGGCAGGAAGACTACTATGGGGACCAGTACAGTCACGCAGGACAGGGAGCCTCAGAAGGTAATGCCCAGTATGGCCAACAGCAGGAAGCATACCAGCAAGGCCCTCCGCAGCAGCAGGGCTACCCTCCTCAACAGCAGTACCCGGGTCAACAGGGCTACCCACCACAGCAGCAGGGTTACGGTCCTGCCCAAAGTGCCCCAGGACAGTATCCCAATTATCCTCAGGGGCAGGGACAACAGTATGGGGGCTATCGCCCTCCCCAACCTGGACCCCCACAGGGCCAACAGCAACGCCCCTATGGCTATGACCAGGGGCACATCAGGAAATAAAGACCCGGGGATTTGAACCCCTGACTAGCTCTGTAAGAAGCAAAGGCCCAGTATGGAAATTACCAGCAATGAGAGATGGTCACATCAACCCACACAGCTCTGCTCTGATCTCTGTCTGAGCTTTGACCTCTGGTCAGCTGCCAAGCAGACTCAAATGATGGTTGTAGCTCACTGAGAT
>XM_039815742.1
AAATTGAATCCTATTCTGAACTGTGTGATCTGAGTTCTACCGATTTGTTAAGTGTGTTAGCTACTTTTGACTTGTATGTCTAGTTCACTTTAATTTCATAGAGAATCACCATGTCGGTGGCGTTTGCACCTCACAGGCAGCGTGGGAAGGGTGACATAACACCCGCTGGAATACAAAAGTTACTTGACGAAAACAACCAGCTGATCCAGTGTATAATGGACTTCCAGAGTAAAGGCAAAACAGCAGAATGTTCACAGTATCAACAGATGCTGCACAGAAATTTAGTGTACCTGGCCACGATAGCAGACTCCAATCAGAACATGCAGTCTCTCCTCCCTGCTCCACCCACTCAGAACATGCCCTTGGGCCCTGGTGGGATGAACCAGAGTGGGCCCCCCCCTCAGCCTCCTCATGGTCACAACATGCCCTCTGAGGGTATGGTCAGCGGTGGCCCTCCAGCCCCACACATGCAGAACCAGATGAATGGACAGATGCCTGgGCCTAATCACATGCCCATGCAAGGTCCCGGTCCAGGTCCCAACCAGCCCCCAAACATGCCCAGTGGCTCTATGAATATGCCCCCCAGCAGCCATGGTTCAATGGGTGGTTACAATCACACTGTCCCTTCTTCCCAGGGCATACCAGCTCAGAGCCAAATGAACATGACCCAGGGCCAGCCCATGGGAAACTATGGGCCTCGGCCAAACATGAACATGCAACCCAGTCAAGGCCCCATGATGCACCAGCAGCCTCCCACTCAGCAGTATAACATGCCTCCTGGTGGTGGTGGACAGCACTACCAAGGGCAACAGACCCCAATGGGCATGATGGGCCAGGTTAACCAAGGGAACCATGTCATGGGGCAGAGGCCAATGCCCCCCTACCGACCCCCACAGCAAGGTAATGCCCAGTATGGCCAACAGCAGGAAGCATACCAGCAAGGCCCTCCGCAGCAGCAGGGCTACCCTCCTCAACAGCAGTACCCGGGTCAACAGGGCTACCCACCACAGCAGCAGGGTTACGGTCCTGCCCAAAGTGCCCCAGGACAGTATCCCAATTATCCTCAGGGGCAGGGACAACAGTATGGGGGCTATCGCCCTCCCCAACCTGGACCCCCACAGGGCCAACAGCAACGCCCCTATGGCTATGACCAGGCCCAGTATGGAAATTACCAGCAATGAGAGATGGTCACATCAACCCACACAGCTCTGCTCTGATCTCTGTCTGAGCTTTGACCTCTGGTCAGCTGCCAAGCAGACTCAAATGATGGTTGTAGCTCACTGAGATTGTCTCAGACACGAACATGCAACactcaaaaatacaaaatacgtTTTCCCCTCTCTTTGGGCTCTTATCCAATGcctataaaatgtatttttctcatGTACATTGACTTGATACAAGTCCATGACTCACCCTCTGGTCCAGTATGTCTCAAAGCAGCAATGCCTTAAAAATGGAACTGCCTTATCCTTTAGCATTGCAGATTGTGAAACAAAATTTTGGATATCAGagataaatgtaaatgtacagtTTCAATCTACTGTGGTGCATTGTTCCTCTATCCTTCAGCTCCTTGTTCATAAGAAGCAATAATGCCAGCAGTAGGGAAATGTGTGGGGGCTTGGAGATGAAATAATGCACCAGACGAACTTCCCGCTAGGCCATGGTACGTGTCTtgatgtatgtgatgatgtaaaaatatattttatgctTTTTAGATCAAAATAACTTTGTATAAGACATTGGAAACTAGTACTAAAGCGGTGTTGTTTATTTCATGTGTATgtgtcaatgtttttttttttttttttttgtaatgatcCCATCCagcatattgttttattttttatttttgttgtgttgAATTGTATAACTATTCAATTGGATCTGCTACGTCTGTGACATGGGCACTATGAATTATTTGTGTAAAAACAGAACATTAATTGACATGCAAAGAAATTCCTTGAAGGACAAAAAACATACATCATACCTGGAATTAGAAAATGTTTAATGTCTGAAAACGCAAGAAACAATTGCTGTATTCTTTGTTAAGCTGTGTATTTAAatctgtgagaaaaaaaatctatatcaaatttcttttttttttttttaaaccacataACCTGAAGGTATAAGAATAATGGCCactggcctttatttgacaaatGTGCCCAAAGATGTAATATGTAGCAGAAGCCACTGCAAAGTGTAAGTCATTGCTCTCTggagtttttttcttcttctatacAAGCACCTCAGTCTTGTCCGTTGACTGCACATTGGTGAATGGAAAAGATCAAACTTGGTATAATAAATGTTTCTAACAAGTATGTTGTTTTGTTAGTCTTGACTTTGCTGGAATCCCCTTTTCCCTTTTGAATAAACGTCTAAGTTGATGTCATTCAAATGGTGTTGTGTGTGAATAATAAAGATTGTTACTGTCAAATATGTAACATAAGATGTGAAAATAATGTTCTCAAATGGATTCCTTAATTTTACAGTAAAGACTGGTTGTGCAGTTTTATATCACTGGCTTGATATCTGTTTTATGGtgcatactttattgatcccataTGTAcagcagcattaaaaaaaaggaattcaTTGTTTATGGCAGTTTTAATATTTGGCATTCTGCACCCCATCCAAGTGGTCACATTTGTGTCATGACAATGTATAACTGTACATTACAATAAATTGGAAGaatctttaatata

Function

symbol description
ss18 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to human SS18 (SS18 subunit of BAF chromatin remodeling complex).

NR:

description
protein SSXT isoform X6

GO: NA

KEGG:

id description
K15623 SS18, SSXT, SYT; protein SSXT

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815740.1 True 2800 mRNA 0.44 10 23177741 23189571
XM_039815741.1 False 1430 mRNA 0.54 11 23177741 23188138
XM_039815742.1 False 2720 mRNA 0.43 9 23177743 23189571

Neighbor

gene id symbol gene type direction distance location
LOC120568942 kctd1,LOC103479566,LOC103373355,LOC106534090,LOC108239680 coding upstream 30324 23134256 ~ 23147417 (+)
aqp4 aqp4 coding upstream 48789 23122523 ~ 23128952 (+)
cdh2 cdh2,LOC103371087 coding upstream 150994 22964585 ~ 23026747 (+)
dsc2l NA coding upstream 311240 22827876 ~ 22866501 (+)
LOC120568988 LOC108239677,LOC104929325,LOC107383927,LOC104949490,LOC101473957,LOC105935174,LOC106958824,LOC100702414,LOC103371147,LOC107092425 coding upstream 365844 22807164 ~ 22811897 (+)
LOC120568373 znf521 coding downstream 22927 23212498 ~ 23302789 (+)
LOC120569134 NA coding downstream 135731 23325302 ~ 23343895 (+)
vps4b vps4b coding downstream 233145 23422716 ~ 23433374 (+)
bcl2b bcl2 coding downstream 252020 23441591 ~ 23467811 (+)
glula LOC103366706,LOC100534445,LOC108239682 coding downstream 626469 23816040 ~ 23820441 (+)
G117128 NA non-coding upstream 259635 22917876 ~ 22918106 (+)
G117082 dsp non-coding upstream 423251 22752252 ~ 22754490 (+)
G117077 NA non-coding upstream 430009 22747120 ~ 22747732 (+)
G116978 NA non-coding upstream 704901 22465335 ~ 22472840 (+)
LOC120568744 NA non-coding upstream 862794 22307767 ~ 22314947 (+)
G117187 NA non-coding downstream 184139 23373710 ~ 23374199 (+)
G117190 NA non-coding downstream 187562 23377133 ~ 23378516 (+)
G117219 NA non-coding downstream 256780 23446351 ~ 23462300 (+)
G117220 NA non-coding downstream 279049 23468620 ~ 23519769 (+)
G117221 LOC101467149 non-coding downstream 282976 23472547 ~ 23473684 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other upstream 496448 22641510 ~ 22681293 (+)
LOC120567968 NA other upstream 557610 22608049 ~ 22620131 (+)
LOC120568354 NA other upstream 1280350 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 2262419 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 2802108 20373227 ~ 20375633 (+)
kdsr kdsr,LOC102792240 other downstream 244054 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 403161 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 661308 23850879 ~ 23855157 (+)
G117353 LOC103366712 other downstream 716299 23905870 ~ 23908401 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other downstream 723093 23912664 ~ 23914498 (+)

Expression


Co-expression Network