psma8 (psma8,LOC102789190,LOC101062730)


Basic Information

Item Value
gene id psma8
gene name psma8,LOC102789190,LOC101062730
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23172058 ~ 23177122 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815743.1
CGCAGGCGCTGTTTTCAACACACGGCATCTTCACAAATCGCTAACTAGCTGAATCATTTGGTGGAAGTCTCCCTTTTTCTTGTGATTGTACGTTAGTTGTCTTGCAGTGCAATGGCGGCAAGATACGACAGAGCTATTACTGTCTTTTCTCCCGATGGTCATCTCTTCCAAGTGGAGTATGCACAAGAAGCTGTAAAGAAAGGTTCCACAGCGGTGGGAATCAGAGGTAAAGACATTGTGGTCCTTGGTGTTGAGAAGAAATCTGTGGCAAAGTTGCAGGAGGAAAGGACTGTCCGTAAGATATGTGCCCTGGATGAGCATGTCTGCATGGCATTTGCAGGCCTGACAGCCGATGCCCGTATTGTGATAAACAGAGCTCGGGTTGAGTGCCAGAGCCACAGGCTAACCGTGGAGGACCCAGTCACAGTGGAATACATCACACGCTACATAGCTACACTGAAACAGCGCTACACTCAAAGCAATGGGCGCAGGCCATTTGGCATCTCTGCGTTAATTGTTGGCTTTGACGACGATGGAACTCCCAGGCTGTATCAGACTGACCCTTCAGGAACCTACCATGCCTGGAAGgcaAATGCTATCGGCCGTAGTGCAAAAACTGTGAGGGAGTTCCTGGAGAAGAATTACACAGATGAAGCCATTGCTGGTGACAATGAGGCAATCAAGTTGGCTATCAAAGCTCTGCTTGAGGTTGTCCAGTCAGGAGGAAAAAATATTGAACTTGCTGTTATCAGACGGAATCAGCCACTGAAGATTTTGGAATCCAAGGAAATTGAGACCCTGGTGGCTGAGATTGAgaaggaaaaagaggaagaggcagagaagaagaagcagaaaaaaTCCACTTGAAGCAGATAACAAAGAGTTTTTCTTTATTGCACTTGGATGACAATAGCATATTTGGGTTGCAAATTATAGAGGGGGTTACTTctgtcattcatttcattgtgaaGAACTAAATCATAACTTGAGATCTGTTGAtgttgttcaaatgttatgcaCCCATTTCTGAGTGATACTGTACAGTTTGCAAAGAATTTCAGGTTCCTATACTTCCAGCTATTAGGTTGACTGTAATTATAAGCACATACATAGATCTCAAGTTAGGGTTTAGATCTTAAACTACGCTTACAGGACATTTTTATATCCTACACCACACTGTTCTGATGGTGATGAATCTCAAATGTTGTAACATTCAGAATCATAATGAAACGAAATGTCCAATAAATGCTGACTTGTttgtaa

Function

symbol description
psma8 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA8 (proteasome 20S subunit alpha 8).

NR:

description
proteasome subunit alpha type-7-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02731 PSMA7; 20S proteasome subunit alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815743.1 True 1263 mRNA 0.43 7 23172058 23177122

Neighbor

gene id symbol gene type direction distance location
LOC120567909 NA coding downstream 347411 22815966 ~ 22824647 (-)
LOC120568106 dsp,LOC104949487 coding downstream 414444 22739634 ~ 22757614 (-)
LOC120568657 tns3 coding downstream 433810 22703464 ~ 22738248 (-)
LOC120569075 LOC104929330,LOC103371151 coding downstream 477383 22689074 ~ 22694675 (-)
LOC120567969 LOC103368948,LOC102290339,LOC102784041,LOC100706175,LOC101476947 coding downstream 549180 22576333 ~ 22622878 (-)
LOC120568995 hrh3,hrh4,LOC103143019,LOC103479572,LOC102223873,LOC108239625 coding upstream 136245 23313367 ~ 23317690 (-)
LOC120568611 lama3 coding upstream 185907 23363029 ~ 23421777 (-)
kmt2cb NA coding upstream 315841 23492963 ~ 23571363 (-)
arhgap21b NA coding upstream 505613 23682735 ~ 23724031 (-)
prtfdc1b LOC103364899,LOC104918289,LOC107083373 coding upstream 548365 23725487 ~ 23734384 (-)
G117158 NA non-coding downstream 6302 23165465 ~ 23165756 (-)
G117137 NA non-coding downstream 61871 22960515 ~ 23110187 (-)
G117148 cdh2,LOC102787731,LOC102201754,LOC101473079,LOC103371087 non-coding downstream 82231 23022225 ~ 23089827 (-)
G117119 NA non-coding downstream 306100 22836055 ~ 22865958 (-)
G117114 NA non-coding downstream 337177 22833066 ~ 22834881 (-)
G117203 LOC103364864 non-coding upstream 154257 23331379 ~ 23337618 (-)
G117205 osbpl1a,LOC100709115,LOC102786734 non-coding upstream 162414 23339536 ~ 23341315 (-)
G117206 LOC101469337 non-coding upstream 164232 23341354 ~ 23341923 (-)
G117265 NA non-coding upstream 269236 23446358 ~ 23462296 (-)
G117302 NA non-coding upstream 608968 23786090 ~ 23786473 (-)
G116969 NA other downstream 903499 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 2161482 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 2176491 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 3376299 19793342 ~ 19795759 (-)
G116138 NA other downstream 3706678 19464700 ~ 19465380 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 168596 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 253244 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 291498 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 673951 23851073 ~ 23856621 (-)
G117560 NA other upstream 1322258 24499380 ~ 24536496 (-)

Expression


Co-expression Network