LOC120568348 (lrp8)


Basic Information

Item Value
gene id LOC120568348
gene name lrp8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14461472 ~ 14537465 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815775.1
TCCACAGCGGAGAGGCAGGCAGCAGCGTCGCAGCGTTACAACAAGAGCGGCTTTCGGGCTTTGTTTTGTGGATGTGAATGAGCTCCATCACCTACTTTAGAAATGTGGACGGATATAAGGACATTGCTACTTTTTCATTCGTTAGTCCTGAGGATTTATTTCTCGGAAGCAACGGATGAGTGTGAGGATGGACAGTTTCAGTGCAACAACAAAAGGTGTATACCGACAATCTGGAGGTGCGACGACGATGACGACTGCTCAGACAacagtgatgaagaaaactGTCCCAGGAAGACATGTGCCCCTGCAGAGTTTGCCTGCTTAAATGGCCAGTGTGTCCCGGGACGTTGGCGATGCGACGGGGAGCCAGAGTGTCCCGATGGCTCTGATGAGGCAGAGGAGACCTGCAGCAAACAGACGTGCCCTCCAGAGAAATTTGACTGTGGGGGATCCACCAATAAGTGTGTCTCGTTGTCATGGAGATGTGATGGGGAGAAGGATTGCGAGAACGGGGCTGACGAGGAGGACTGTGCGTCGGATGCCAAAGCCTGCCCCAGCGGTGAGTTCATGTGTGCCAACCGCAAGTGCTTGGCCATCGTCCACGTGTGCGACGGTGACGACGACTGCGGAGACGGCAGCGATGAGCTCAAGTGTACCTCCCCTCTGACCTGCGGGCCCAACCATCTCCGCTGTAACACCTCGGAGTGTGTGCCGCTCATATGGAGCTGCGACGGAGACCCCGACTGCTCCGACAGTTCGGACGAGGGGCCGGAGCGCTGCGGCGGCGACGGGGTCTCGTATCTGCCTAACCGCCGAACAAACTGCACTGCTGGCGAGTTTCGCTGCGCAAACGGGGAGTGTGTGCGGTTAACCTGGAAATGTGATGGAGATCCAGACTGCAAGGACAAGTCTGATGAGTCTGACTGCCCCCTGTTGACGTGCCGTCCCGATGAGTTCCAGTGCGGTGATGGTTCCTGCATCCACGGCACCAAGCAGTGTAACAAGGTCCATGACTGTCCTGACCGCAGCGATGAATCTGGCTGTGTCAATGCCACCAAATGTGAGGGACCGCTGAAGTTTCTGTGTAAGAATGGAGAGTGCATTGATAGCTCCAAGGTGTGTGACTCTGTCAAGGACTGCAAGGACCGATCAGATGAGCCCAAGAAGGAATGCGGGCTGAATGAGTGTATGATCAACAACGGCGGCTGCTCCCATGTCTGCATGGACCGACCAATCGGCTTTGAGTGCCAGTGCCCCGCTGGCTACCAGCTACTGGATAAAAAGACTTGTGGTGACATTGATGAGTGTGAGAACCCTGATGCTTGTAGCCAGATCTGCATCAACTACAAGGGAGATTTTAAATGTGAATGCTATGAAGGCTATGAGATGGACCCTGTTACTAAGACCTGCAAGGCAGAAGGGAAGAGCCCTTACTTGCTGTTCACCAACCGGCATGAGATCCGCCGCATCGACCTGGTGAAGAGGGACTACAGCCAGGTGGTGTCCACCCAGAAGAACGCTGTGGCTCTGGATCTGGACGTGGCCAACAACCGTGTCTTCTGGTGCGATCGCTTTCACCGGAAAATCTACAGTGCCTTCATCCATGAGGCCAGTGACCCCTCTCAGCAGGTGCCGCTGCTGGAATCTCTCCTGCATACCCCTGTGGGTCTGGCTCTGGACTGGCTCCAACACAACCTGTACTGGACCGACTCCGGCGACAAATCCGTCTCCGTGGCCTCAGTGGACGCCACCAAGAGACGCGTCCTCATTAACACGGACCTGAGTGAACCCCGGGCCATAGCGCTGGATCCCCACCACGGCTTTATGTACTGGTCAGACTGGGGCACACGAGCCAAGATAGAGAAGGCCGGGATGAATGGAGTGGACCGACAGGTGCTGGTGGCTGACAACATTGAATGGCCCAATGGCATCACGCTAGatGTAGCCAACAGGCGTCTGTACTGGGTGGATTCAAAGTTGCACCTTATAGCCAGTGTGGACCTGAACGGAGCTCACCGCAGAACACACATGTCGTCCGCAGAGAGACTGGGACACCCCTATGCACTGGCTGTTTTTGAGGATCGTATCTActggacagacagagacaaggcGGCGGTCTTCATGGCCAACAGGCTGACCGGACAAGACATCCACACGCTGGCTGAAAACCTCAACGACCCCCATGATATCGTGGTTTTCCACCAGCTCCGCCAGccacaagGCCCAGACAGCTGTAATCTGGGCAGTGTGGCCAATGGAGGCTGTGAGTACTTGTGTCTAAAGGCTCCACAGATTACCGAACACTCACCCAAATACACCTGCGCCTGCCCCGACGGGCAGGACCTGGGTCCTGATATGAGGGGCTGTGTGCCAGCAGCGCCAAGAAATGACATGACACCGACCTCTTCCCCTCCTACTGGATTTACACCTGGCAACAGAGCGACTGTTGCGGAAGAATTCCCTCCGCCCTCAGGGGGAGTATCGCAGGCGGACGCCACCCCCCACTTGACCACAGCTCCCTCTGGTGCCCCCGAGCCCCTCACACCCGTCTCCACTCTTAAGCCTTTGTCGTCACAAGAGTCAAAGGCACTGGGCTCCCACTACACCGCCACCGCTATGGTCATCTCCACCACAGCTGCGGGGGACAGCAGCGTCTCTCAACACTCCGTGCACGCACGATCAGTTGCTCCCCGCCTCTCTGTTTTttctaggggtgtgcaaaaaaatgtattcacattCGAATCGCGATTCTAGCTctatcgattcatagaattccaaaaatcgattgatatttatttattt

Function

symbol description
lrp8 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial hypoblast; brain; immature eye; neural tube; and neurons. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; dementia; myocardial infarction; and schizophrenia. Orthologous to human LRP8 (LDL receptor related protein 8).

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 8

GO: NA

KEGG:

id description
K20052 LRP8, APOER2; low-density lipoprotein receptor-related protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815775.1 True 2802 mRNA 0.55 17 14461472 14537465

Neighbor

gene id symbol gene type direction distance location
LOC120568914 LOC104950559 coding downstream 25266 14430089 ~ 14436206 (-)
LOC120567626 LOC103364420,LOC104948953 coding downstream 31914 14422482 ~ 14429558 (-)
LOC120568976 leprot coding downstream 41275 14416830 ~ 14420197 (-)
LOC120568103 pde4b,LOC104954895,LOC101483836,LOC100690322,LOC102791018 coding downstream 46772 14355617 ~ 14414700 (-)
fzr1b LOC104927424,LOC102292505,LOC103364951,LOC102791500,LOC101485033 coding downstream 111913 14339669 ~ 14349559 (-)
LOC120567737 NA coding upstream 13572 14551037 ~ 14553669 (-)
LOC120567803 LOC104934906,LOC103364073,LOC103479012 coding upstream 24042 14561507 ~ 14564705 (-)
scp2a scp2 coding upstream 88702 14626167 ~ 14651376 (-)
czib LOC103363808,LOC100704007 coding upstream 115943 14653408 ~ 14658272 (-)
uck2b LOC104935075,LOC103363741,LOC102787436,LOC100703739,LOC101481213 coding upstream 121407 14658872 ~ 14667205 (-)
G114538 LOC104949927,LOC103364340 non-coding downstream 13539 14440881 ~ 14447933 (-)
G114518 NA non-coding downstream 140709 14319343 ~ 14320763 (-)
LOC120568036 NA non-coding downstream 289998 14124703 ~ 14171474 (-)
G114456 c8a non-coding downstream 405949 14049494 ~ 14055523 (-)
LOC120567953 NA non-coding downstream 513357 13942055 ~ 13948115 (-)
G114633 NA non-coding upstream 151992 14689457 ~ 14690066 (-)
G114636 NA non-coding upstream 156167 14693632 ~ 14693957 (-)
G114661 NA non-coding upstream 213780 14751245 ~ 14751528 (-)
LOC120569096 NA non-coding upstream 242811 14780276 ~ 14782472 (-)
LOC120568695 NA non-coding upstream 417113 14954578 ~ 14958403 (-)
tfr1a NA other downstream 492661 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 979247 13469531 ~ 13482225 (-)
G114152 NA other downstream 1372909 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 1486144 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 1692847 12760748 ~ 12768625 (-)
LOC120568687 NA other upstream 76148 14613613 ~ 14618224 (-)
G114680 NA other upstream 258453 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 752617 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 1606695 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 1645189 16182654 ~ 16201698 (-)

Expression


Co-expression Network