zgc:85843 (tm6sf2,LOC104924838,LOC102294137,LOC102201647)


Basic Information

Item Value
gene id zgc:85843
gene name tm6sf2,LOC104924838,LOC102294137,LOC102201647
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26666504 ~ 26672258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815839.1
TGCAGCCAGGAATACCAAAGTGCTTGTTTTCACAAAGGACAAATGCGTATTTTACGCATTACGCGCGATCCAGAAGTCCATTTTCTGCACTTTGCACGGCTCTCCCTTTAAAGTTTCAATCAGTAGACGTGATTACTGAGTTGAACTTTGAGACCTACTAGATAGCAGACGTATTGGAGCAGCAGTGTTGTGTCATCACAGATCAAAAGGCAACGGGGTGACACACTTTAATGACCTCCGTCCCTCGGTGGCAGTGGAGAGGACGCTGGCTTCTAACATGCCTCGCTTCACAACCAAGCGTGTTTAGCAGATAATATTTCGATCTGGACatttctttctaaaaaaaaagaggtcaAACAATTCGTTTTTAACAATGAGGCCTCCGGTGGACGTCTGCGTGTTAATCCTTTCTCTCTCGGCTCCTGGAGTTTTGAAGGCCATGAACAACATCCCTGCACTTCAGGAACCTCTTCCTATCCTGGGAATGGGAATGGTCGTCCTGGGACTTGttattcttctcctcctcctcactgttCAAAACCAGAAGAAAGTGGACCCCTTATTCTATGTATTTGCAGGGTTTTCCTTCACCTGCATGGTGGGTCTGACCAATGCTTTAGAGCAGGATGGGTTCATCTCTGGCTTCATGGCCTTCTACCTAAAGACGGGTGAGCCTCATCTAAGAACCGCCTACGCTGTGATGATGTCTTACTGGGATGGCATCGTTCActtgctcctcttcctcaccaTCATCCACCGCATGTTCAAAGGGAAGTCCTATCGTAGCCTGGGGCTGCTGTGGGCCGGCTCCTCCATCGGCCATCAAATTGTTCACATCCCAGGAGTGGCTATTGGTAAATACGGGTCTAACATTCAACCAGCCTTTTGGAGGAACGTCCCATTCTTCTTGGTGCCTTTCTGGGCGGCCTCGCTGCTCTTTAGCCGACCCAGAGAGATGCCAGTCATAACAGCAGACAAGATTATAGCCGAGCAGAAGAAAGGATTGCTGTCTCGACCTGTTGACCTGCTTCTGTCTCTTCTGTTACTCGGAGCAATGGCCTTCTCTGTTTTCAGAGGCTTTGTGGTGCTGGACTGTCCTCTGGACGCCTGTTTCACCTATGTCTACCAGTACGAGCCCTACCTCAAAGACCCAGTTGGCTTTCCAAGAGTTACAATGCTGGTGTATTTTTTCTATGCTCTGCCCCTGCTGACTGTCTTCACCTATGGTCTGAAAACACCTGGATGCAGCTGGATGTTGGACTGGACCGTCTTCTTTGCTGGGGCCATGGCTCAGACCCAGTGGTGCCATATCGGAGCATCTCTGCACTCTCGCACTCCCTTCACGTACCGAGTCCCAGCAGACAAATGGTGGCCTGTTATCACCCTCAATGTGCTGCTGGCTGCTGTGCCGGCTCTGCTGGCCCTGCGCTGCCGCAACAACCCCGCTTATTTTCTGAAACCTGTTCCCGAGGGACAGACCAGCaacgagaagaagaaaaactagACCACACACCAGCCACGGACTGTTGAGGAATACTTCACGCTGTGACAAGGCTAATGTTTTCTGGGGACTCTCTTTGgcaaacaaactgcattaaacacACTTTATCAACTTCAAACTCAgatgaaatcttaaaaaatgttACTCTCTGAATCAACTGTTTAAAATCAGTCACCtcgcgcagcagcagcagcactcccTGCATGGACTATTGGAACCTGATAAGAAGGCTGTTGATGGTGTTGAGGACTGTGATCAGCTTTCGGGTGACTCATGCAGATTCCTAGTTGGTATCTTCCCAAACTAAGACTATTAACCTGGATCATACAGTTTGGCAACACACTACTGGAGAGTAACAGTCAGCATTATGCATCTTTTTGTATGCAGAAATCCACACCACAACTCCACAGCTGGAAGTTTGTTTTTACTGATCTAAAATTCAGTTTAAAAACTGTGAATATAAGAAGAAGACTCGCTGAATGCTTAAAATGCTGAATAAGAGTTGATGATAAGTTAGATAATAGCAGATGCTATTCAAATGGAGAATTTGATGAAGGAAAAACTCAACCTGGTGTCCTATATTGTGTCAaatatttgatgactttcattACCGGGGCAGCAACCAACAATTACATTCTTATTAATTGTTTAATCATTTGGTctagaaaataatgaaaaatgtccatcataATTTCCAAAAGCtgatgattgaaaaaaaaaactcctcacATTAGAGAAGCTGAAACCTGAGATTTAGTGTATTTTAAGTGACTTAAATgattgatatgatatgatatgatgatAAATGATTCCACTATAATTCTGACTGCATCTTAGAGTggttttccatgtttttatgttCCACTTTATTTTGTACAGTAAAAAGAAATGGAGCACTGAATTGGGCTTGTTTTTGTATTCACGGGATACAGATTATTAGAGCCAGGTATTGGCTGGtagtgtctaaaaaaaaaaaagaagttgatCATGAAACCGAGCAGTTTGCTGGAGGATTATCTCTTCAGATGTCAATATTGTCTCCGGTTAGCAGTCATTGTGTCCTGTGAGGTGAACCGCTGGCCCAGTTAACTCTGCTGCAGTTGGCAAACTGATAAGAGCTGAACCCTGGATTTAGGTGAGCCACAACAGCAAACATAATGTATTACACGTGAATCAGCTGTCCGTGTAATTCTCTCATGGTGGATCAACATGGTTGCCCTTTTCTCATCAGTTGTGGGCTGAAGATCAtcttttatatttaaaagttacacagtgtttttttaaaatggagGATACCAATGTTTTTAGATGCAGTGACCTGAAATTTGATGCTTTTGGTTGATTGCATTTAACACCCAATTTAACACCCAATAGAATGTAGTCATGGTAGAGgagagaaaagtaaaagaaaatcatcaTTTTTAGGCCACATGCAAGTGGTTTCAAATGAATACAAATGTACAccaattttgttttattatacataaaataaaaacatattccaAACAGAAGATTTTAGGGAATTATTCATGACTCCCATACAGGGCCAAAAGGGTTTCCTGGACTTAAAGACGAGTGTGTAGGATTAAGTGGCATATAGCGATGAGGTTCCAGATTGCAATTAACTAAATAAccctgttataataataatccaagtgtgcAGGAGCACGTACCGTAGCTTTCAGGAAGGCCCTCTGTAGAGCTGGTGTTTGGTTTGTCCGttctgggctactgtagaaacatggcAGTGCAACATGGCAGGCTCCATGGAAGAGGACCCATTCTAAGATAATGAAAACATAGTTCTTAGTTTCAGGGTATTATACACTAatggaaacaaagaaaaaaatattaataatttattacatttctGCGAATATCCCCTAAATTCTACACACTGCTGCTTAAAAATCCTCACTATGGCCCTAATTAAATCCAGTTTAGATAGAAGTGAAGAATGATAGATATATTTCTGTGGTTGAACTTCCGTATCAGATTAAAATCAAACTGTAATTCA

Function

symbol description
tm6sf2 Acts upstream of or within lipid homeostasis and regulation of response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Is expressed in intestine; liver; and posterior intestine. Used to study fatty liver disease. Orthologous to several human genes including TM6SF2 (transmembrane 6 superfamily member 2).

NR:

description
transmembrane 6 superfamily member 2-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815839.1 True 3518 mRNA 0.43 10 26666504 26672258

Neighbor

gene id symbol gene type direction distance location
LOC120568699 slc25a24,LOC104964315,LOC103357622 coding upstream 77933 26580603 ~ 26588571 (+)
LOC120568740 NA coding upstream 100859 26559608 ~ 26565645 (+)
LOC120567674 NA coding upstream 106863 26554070 ~ 26559641 (+)
LOC120567673 NA coding upstream 113423 26534496 ~ 26553081 (+)
fndc7a NA coding upstream 130805 26524945 ~ 26535699 (+)
LOC120569005 LOC106935698,LOC103153539 coding downstream 119944 26792202 ~ 26813425 (+)
ndufa13 ndufa13,LOC102786334 coding downstream 143426 26815684 ~ 26819017 (+)
LOC120567603 LOC103357602,LOC108239446,LOC104948981,LOC105934574 coding downstream 218677 26890935 ~ 26899765 (+)
LOC120568413 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 coding downstream 286408 26958666 ~ 26963795 (+)
sf3a2 sf3a2 coding downstream 320945 26993203 ~ 26997296 (+)
G118135 NA non-coding upstream 1660 26662282 ~ 26664844 (+)
G118098 NA non-coding upstream 61420 26548656 ~ 26605084 (+)
G118095 NA non-coding upstream 65095 26532166 ~ 26601409 (+)
G118009 NA non-coding upstream 351874 26314265 ~ 26314630 (+)
G117938 NA non-coding upstream 457633 26208356 ~ 26208871 (+)
LOC120569009 NA non-coding downstream 71483 26743741 ~ 26763260 (+)
LOC120569008 NA non-coding downstream 109109 26781367 ~ 26784859 (+)
G118164 NA non-coding downstream 148985 26821243 ~ 26824078 (+)
G118263 NA non-coding downstream 296246 26968504 ~ 26968990 (+)
G118265 NA non-coding downstream 304040 26976298 ~ 27055691 (+)
prkab2 prkab2,LOC101470867,LOC107384083,LOC102226598 other upstream 66432 26590782 ~ 26600072 (+)
wdr47a wdr47,LOC102290984 other upstream 169695 26421454 ~ 26496809 (+)
ccl20a.3 NA other upstream 248496 26416508 ~ 26418008 (+)
G118011 eif4e2 other upstream 264426 26395426 ~ 26402078 (+)
ece2a ece2,LOC103356888 other upstream 356957 26217998 ~ 26309547 (+)
G118149 NA other downstream 93234 26765492 ~ 26769911 (+)
LOC120567599 LOC101062208 other downstream 166920 26839178 ~ 26857394 (+)
LOC120568791 LOC103357601 other downstream 206297 26878555 ~ 26938882 (+)
G118234 sugp1 other downstream 211301 26883559 ~ 26886030 (+)
tcf3a tcf3,LOC103366684,LOC104929652 other downstream 474803 27147061 ~ 27177206 (+)

Expression


Co-expression Network