LOC120568394 (LOC103359187)


Basic Information

Item Value
gene id LOC120568394
gene name LOC103359187
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25281304 ~ 25353783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815908.1
AGTGGCAGCGCTGGCATAGCATCGTTCAGAATATCCTGAGCCGGGGACGATCGAGCTGCGGTAGCTGCCTGTGCGCACCCCATATAGCCGgTGAACCTAAACCCACAACAGTGGATATATCAGACAGGGGGGGTCTGCTCTCATCTTGGGCACAGCGTGAGAAGATTCAATTGTTTGCGGGGAAATTAATAAAgctcctttcctttcctgtcctgtcctgtcctgtccagtCCACATCGGCCCCTAGGAGTGGGAAGACACGGGACCTCTGCGCTGTGAAGAGTCGCTTCTGTGCCGTGCGCGGAGAGCAGTACGCACCAGAAAGGGCAGCAGGGATATACAGTAGGAAGGTGGAGGATATTTTACGCACAGCAGCACTCAGTAGCCCTGTTTCACACGCGGCCACTTACCGGGAGTCTCCTGCTCCGTTTAGGTCTCAAGACAGTCGCTTCGTCGGATTTGCACTTGACTAAGTCCACATAGCCCGCAGCAGTCGGCTGGGATGGATTCCTTCATCATCGCGGCTCTGGCAGTGTGCTCTCTAACGGCACCAGCCTATGGCGACAAAGGGACCAGCAAAGCCCGGAGTTGTTCGGATATCAGGCAGTTTTATAGCGGGAAAGGATTCGCTCTGGATGGTGTCCCTCAGTCCGAAATATCAGGGGAGCACCTGCGCATCTGTCCCCAGGGTTACACCTGCTGCACCAGTGACATGGAGGATAACTTGGCCTCGCTAAGCCACAGGGAGATAGAGGGACTCCTCAAAGATGTTGGCCGATCCTTACAGACCTCACTCACTGGACAGTACAAGGCCTTCGATGGTTCCTTCCTGGAGTTGCTGAACCGCTCGACGATTAGTCTACAGGAGACTTTCCCTCCAACTTGGGGCTCCGTATACTCCCAGAACTCCCAGTTCTTCTCTGACCTGTATACGGATTTGAGGCACTATTACCGAGGCTCCAATGTCAACCTGGAAGAGGTGCTCAACGAATTCTGGGCCAGGCTGCTGGAGAAGCTCTTCTACCAGGCAAACAAGCAATATGTCATAGGTGAGGAGTACCTGGAGTGTGTGTCCAAGCAGATAGAGACACTGCGGCCCTTTGGAGACACACCCCGTGTGATGAAGATGATGGTCACACGCACATTTGTGGCAGCACGCTCTTTTGTTCAGGGACTGGTGGTCAGTGGGGAGGTGGTGCGCAAAGTGtcccagGTGCAGATGAGCACTGAGTGCACGCGGGCCATGATGAGGATGACTTACTGTCCCCACTGCCGCGGCATGGCCTCTGCCAGACCGTGTGCCAACTACTGCAGCAACGTCATGAAGGGCTGTCTGGCCAACCAGGCTGACCTCAACACCGAGTGGAGACATCTGGCAGAAACAATGATGCAGGTGGCCGGTCGCTTCAATGGTCCATCTGGTGTGGAGAGCGTGGTCCTTACCCTCCCCAATCGCATATCAGAAGGCATGTCTACCATGATGGAGAATATAGAGACCATCAACAGCAAGTTGTTCCAGGCGTGTGGCAACATCAGAGAGGGAGGAACCAGCAGCACGGGACCCGACGACACCATGAAGAGAGTGAAGGTTACAGTGGAGGACAAGTTGGGAACCAGCTCTAACAAAATGGACAAACTGGTGTCTGATGTAACCGCGAGACTGAGGGACATGCAGCCGTACTGGGTTTCTCTCCCAAACATTCTCTGCAGTGACAGAGTGGCCACTGGAACAGGGGCCGAGGATAAGTGCTGGAACGGCATGAACCGTGCCAGGTACCTTCCCGAGGTGATCGGTGATGGCCTCGCCAGCCAGATCAACAACCCTGAGGTGGAAACCGACATCACCAAACCAGACATGACAATACGCCAACAGATAATGCAGCTGAAGATCATGACGCACCGTTTGAAGAATGCTCTCAACGGCCAGGATGTGGACTTTCAGGACACCAGTGATGATGTCAGCGGTTCAGGAAGCGGCATGTGCGCCGACGATATGTGTTCCCGTGGCCCACGCCTTGTCCCCATCACCGACCGACCCAAATTCTTTCAACCCCCTCCAGTTAACGAAGGGGTGAAAGGAAACCACGCCAAGCAGAACCTCCCCTGCATTACCATTTACCTGCTTCCACTACTTATTTTGCTGCTCCGGCGATAATTGACGGGGAATCTACCAACTGGGACTGAGTTTGGGACACGGAGGTTGGGGAGAGTCTgaaaggggagggaggagaagttggGGGTTAGTTACTTTGCCAAAACTAAATACTAAGtgtaaggaaaaaaacaacaaaaatcactTGGACGGACTTCCTTTTGGTTTTGGATTAGAAGAAAATGGAATTATGAGTATTCATAAATGTTTTGGTTctgctcttttcttttatttcttgctATATTATGACACCATTAGAGCTGGTCTTTGCACATCGTCTAATGTTTTGTTTCTGGTTTTTGGGTTCTCTGAGATTATATCTACCTAAGACATGTGTAAGACTATATTGCTCACAGTATGTTGGTGTTGACAccacagggagagggagaatgGGGCTTTGCAGTGGCGCTTAGATACATATATTTGTTATtccactcctttttttttaaaacggcACTTGTGTTCAGTAGAATTATTTATTGATCAATAACCCATTACAGAGCCCAGAGTGGTTTAATCACTCCCCAATATTTATAGAAAATATAGATGAACCACAAACTTAAATGAAATACAATATTGATGACTTTTTAAAGGAGGATAATCTGGACAGCACGACCCAGCAGACCTCTTAATGCATTAAGCCTCACAATATGATTACACTctcaacacacactctctcacagcAAGGATGCGAGCACTCGGCGTCAGCACTTTTTAGCCATTTCATCATGTAAGCTGTAATAATAGCCGtgatcacattcacactgaCATGATCGTCTAATGTGGGAGTAACGTGACCCGTCAGCCACTCTATCCATCCGCTCATCCCTACATTCCCTCTGCTGGGGCagatctccctctctctctctctctctctttctctctctctctctctctctccctctctccagacTCTGCCGGCTGTGTGGGATCAACTCGAGAGTCTGGTGTAACCATAACACATGCTGGGCCGGGCCAGGTCTCAGATGACAGCATCTTCCCACTATAGAGCGCTGTATGTGGAATGGGGGTGTCAGTTTAAGATTGCCATCACGGCAAAGGATTGACAGTTCACGATGTTGGAAACGTGTAGCAGAACAGAAATGTACACGGAAGCAAAAACACTGCTGTCATGtagcgcttttttttttttcttttcagtattCTTTTTATGTGCACAGCAGAGCAACAATATAATATGCATAATTTTGTGTGTTCCCTGCAAAGGCCCAGTGCTCCTGTGATTAGCATCGAAATTGCAGCTTGCGTTTTTGTCTCATTGCAGCAATGATCCATATCACAGTAACAGCCACACCATGCACGTCTTTGTATCGTACTTACCTATTTGTATGGCAGACACAACAGTGTACATGCTTTTGGTTGTTttccagaagaaaaaaaaaaaaatcaccagttAGCTATCCAAATTTTATAACGGCCGGCATCTTATGCTATAACTCTTATTTCATTCATCATCTGTCATCGCGTATCCATATCTGCCTTCCCTTTCTCTGCAAACTTTTCTATATCAGTGCCTCTTTATTCCCACCCCCTACTCCCGCTACCCTCCTCCCCGCTCATCAGTTATAACGACCTTTAAAGCGTCCCTCATGCTTCTTCAGTTGTTATGGTGGCAAGGCAATATGACAATGACACTGTTTCATTATGTGTCAACCTTATTGGGAATGTTGCGGGAACACAGTTTTAAGGCTTTTCCTGATGAGAATGCTTGTTGGGGAGAAAACATACCACACGTGTGGACAGGATGATGGGACGAtgcttgcatgtgtgtatatttgtgtgtgaatgtgtggacTTGTCTTTGATTGATAGAGCAAAAGAGGGACAGATGATAGAGCCTTTATAAACCTTGTTTGGAGGGCACGGaaatgaaatgtattaaaatgtatCGGACTAACATTGTCTGACTTAGTGCGATACAACTGACAGCAACGGGAGATGAATATAGCTCATTTTTCCCCCACCAAAAATTGGATTTTCAACCAATCCTAATCCGTATTGATGGTATCTCTGCTTGTCAGTATTGTATGTGACAGATACATTTAATTTGGAGGACGGGAATTGACACATAGTTTTAAAATACATCACTGCTTTAGTTGCACGTTGGGACAATCCACCATGATTCatttaatgagaaaaaaaaactatatgcATCTGACAGTTGATAATACTGCAGCTCCGATTAAGTTGTTGGAGGCTCTGTCAAATTTTGAGAACCACATCTGTTAGATACTTGGTTAATTACTGCTCTGAAAATAGGTGAGGCTGTTGTCAAGTGTTACCTGACATGTTACTTTGatgatattttcttttttttcctctcgaCTTGCTTAATTAATGTTTgctgtgcgtatgtgtgtctatgtgcggcgtgtgtctgtctttctgttagTCCCTGGTTAAAGAAATCTGCCTGTGACTGCCTTTGCCATTTTGTCTAGGGTTGGGGTCCATTTTTAGATTCAAAAACAGAGATATAATGATATTAGATAGGGGAAAAATACACATATTGAACAAAGAACAATTAGTAAGAGCACTACATTAGTCTTCTTTTTGTGACCCTCTAGACAAATCTGAATTTGAATGTGAAAGTCCACATTAAGCCCTGTAAAGAATGAGAAATGACTCCAACTGTGATGGTGACATTCCAATTCAAAGACAACTTGCGACTCACAACTTCAGTTTCAATGACTGCCTCACAATGTCATCGGCTGAAATTTGCACAACCCCCCAACcctcccctccttctctcctcctccacctttTGATCTCATTAATTTGTTGCTCAAAGTCCCCCTCCCTTTTATAAAACCTGCACTTTTATGAGGCCAATGAATGGCATTGTCTGCACATAGACATCACAAGATGGTCGATCAATATGTGAGTCAACACCTTCCAAAAACGACTATTGATTGGGGATGTGCGTATGCAGATAGATATGGCCCAGCAAGACGTCTCCTGTTCAACTATGGTGAAACAGTGTAAAAACAAAGAGGCAGGAAGAAAGGTTGTGGAGTGCTGATCTTAAATCAGTGTGTGCACCTTAATCCTGCACTCATTCATTAGGTGGAAACATGCAAAGCCGGTTATCCCACCATTTAAAGACGGCTTTATTCTACACCGTTTGTTGAATACGAGGAATTTCTTAAAGGTGCCAATTTATGAGGAACAAAGTACTTTTAATTCTCGTTTTTATGTACTTTGGTTTTGTTGTTATCAGAAATCTATGGAGAGTTTGTGCTTATGTCGAAGATAGATGCCAGAAAGAGGTTGAAAATTACAAATGTCTCATTTGCTGTTGTACCTGAAATCTTGTGTCAATTATATACATTGTAAGATTTTCAACA

Function

NR:

description
PREDICTED: glypican-1-like

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815908.1 True 5520 mRNA 0.46 12 25281304 25353783

Neighbor

gene id symbol gene type direction distance location
gpc5c LOC103359185,LOC104919215 coding upstream 18963 25140737 ~ 25262341 (+)
LOC120568127 NA coding upstream 167502 25085974 ~ 25113802 (+)
extl2 extl2 coding upstream 285102 24992144 ~ 24996202 (+)
rc3h1b rc3h1 coding upstream 300424 24965665 ~ 24980880 (+)
LOC120568131 otol1,LOC104951468 coding upstream 341425 24936959 ~ 24939879 (+)
LOC120568352 ephb1,LOC103359190,LOC105935923,LOC107384019,LOC106599529,LOC106907045 coding downstream 22402 25376185 ~ 25557632 (+)
LOC120568896 NA coding downstream 454238 25808021 ~ 25811280 (+)
acsl3b LOC103356873,LOC102195906 coding downstream 577758 25931541 ~ 25944450 (+)
scg2b LOC104966178,LOC102792743 coding downstream 606023 25959806 ~ 25963171 (+)
LOC120568964 dhrs12,LOC103356877,LOC100697743 coding downstream 614827 25968610 ~ 25972306 (+)
LOC120568228 NA non-coding upstream 150375 25125831 ~ 25130929 (+)
G117704 NA non-coding upstream 162802 25118231 ~ 25118502 (+)
G117632 NA non-coding upstream 443075 24837956 ~ 24838229 (+)
G117547 NA non-coding upstream 724647 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 942048 24337693 ~ 24339256 (+)
LOC120568901 NA non-coding downstream 428392 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 518546 25872329 ~ 25873402 (+)
LOC120568898 NA non-coding downstream 526721 25880504 ~ 25888841 (+)
G117845 LOC103356872,LOC107087289 non-coding downstream 551130 25904913 ~ 25905131 (+)
G117846 NA non-coding downstream 552332 25906115 ~ 25906316 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other upstream 237247 24987499 ~ 25044057 (+)
G117664 NA other upstream 327057 24950568 ~ 24954247 (+)
selenot1a selenot,LOC103365166 other upstream 411217 24862996 ~ 24870087 (+)
LOC120569045 cacybp other upstream 605550 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 702992 24569528 ~ 24578312 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 389544 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 419994 25773777 ~ 25793954 (+)
G117829 NA other downstream 475981 25829764 ~ 25830695 (+)
LOC120567655 LOC103356880,LOC101482764,LOC104966182,LOC107087304 other downstream 695006 26048789 ~ 26051099 (+)
LOC120568800 NA other downstream 860649 26214432 ~ 26217041 (+)

Expression


Co-expression Network