kdm4ab (LOC103353045)


Basic Information

Item Value
gene id kdm4ab
gene name LOC103353045
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34120583 ~ 34152780 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815919.1
ATCCGAGATGCGTGTGCTTGCGTAGAAGTGGTAATGGAGGATGATCTATTTACAGGGGGCTTAGTTAGCAAGCTGTCTTCTTTCTCTTATGTGCACAACTGCTGTTTCTATTGATTACAACGCAAAGGAACAACGTCGTGAATCAATCCCGAGGAGGTGGAACTGCCATTGAGTTTTGGGATGGCGTCAGACGTAGTTTCCCAAACCCATGGTTCCAAGGGGATCATGACTTTTTACCCCACTGTTGAGGAGTTCAAGAACTTCAGCCGCTACATTGCATATGTTGAATCCCAGGGAGCACATAAAGCAGGCCTGGCTAAAATTGTGCCACCAAAGGAATGGAAGCCGCGAAGCTCTTATGACGATATAGACGACTTGGTGATCCCTGCACCCATTCAGCAGGTGGTGACAGGCCAGTCGGGCCTTTTCACACAATACAACATTCAGAAGAAGTCCATGACCGTGAGAGAGTTTCGCAAAATGGCCAACAGTGACAAGTTCTGTAGTCCACATTATGATGACTTTGAGGAGCTGGAAAGGAAGTACTGGAAGAATGTGACATTTAACCCTCCCATATATGGGGCAGATGTTAATGGATCGCTATATGGCCCTGAAGTCAAAGAGTGGAACATTCGCCGACTGAACACCATTTTGGATACTGTTGAATCTGAAAGCGGCATCACTATTGAGGGTGTTAATACACCCTACTTGTATTTTGGCATGTGGAAGACCACTTTTGCATGGCATACTGAGGACATGGACCTCTACAGTATCAACTATTTGCACTTTGGAGAGCCCAAATCGTGGTACTGTGTTCCTCCAGAGCATGGGAAAAGATTGGAGCGTTTAGCTAAAGGGTTTTTTCCTGGTAGTTCCCAAAATTGTGAGGCCTTTTTGAGGCACAAGATGACTCTCATATCTCCCTCTATACTGAAGAAGTATGGCATTCCGTTTGATAAGATTACTCAGGAGGCTGGTGAGTTCATGGTAACTTTCCCGTATGCATATCATGCTGGTTTCAACCATGGTTTCAACTGTGCAGAATCCACCAACTTTGCAACAGAGAGATGGATTGAGTACGGCAAGCAAGCAGTTTTGTGCTCATGCCGTAAAGACATGGTGAAGATTTCCAtggatgtatttgttaaaaaataccAGCCAGATCGTTATGAACAGTGGCTGGCAGGACGAGATGTGTCACCCATTGACCACACGCGGCCCACCCCAGAGGCGAGGGAGTTCCTGGGGGAGTCCTTTAATGACATCACCAGCAACAGTAACAGTAACTCCGTGGAGAGCTGTGAGGAGGATGGAGAGCGGAAGAGCACTACACAGAGGATAGAGACCAAGAGACACCGAGTGTGCCTGGAGGTGCCTAAGGAGGTTGTTCCCAAAGATGAAGATGTGGAGCAGTATGGGAAGCGTCCCCGGCTCAGCCTTATACCTCCACGCGCCATTTTACAAGAGGGCAAAAGAAATAAAGGCCCACCGAAGTTGGTTGTCACACCAACCAAGCTCACTTTATTGGATCCATTTCATAGGGGCTTGACCCAAAGTGTCAGTGATGTAGGACGCCCCCCACATTATACTAAGACTCGCGCCCCTGCTATCTCGTCTCAGTCCCTGCCCAGAAACGGACATCTATCAGTTTCCGCTGCACCTTCGTGGACGGAAATCAAGGCTCAGCCTGTCCGCAAAATGGGGGTAGCCAGCCTGCTCTTCCACAGGACTCTGAGCCCAAAAGACACTCTTCAAGTGCACAGCTATACGCTAGAAAGGCAGCAGCAGCCTCGCACACAGCTGCAGGTGCACAGCTATGCCAGAGAGCATCAACCCCGTCATCTCCAGCACAAAACCTGTACAccgtcacacacacaggctcagtcCTCGCCTCAGGCCCCAAGCTGTGAAAGGACGGAGCCACAGCCACAATCCAAGATTCTTCTTACCAAAGCACTACCGATTAAGTCCGAAGCACCGAGTCTTGTGGAGCAGGACCAAAAGATGGACAAACCTAAAATGTCTATGCCTGTTGAGGCTCAGGCAGAAGTGCAGAAGCCTGAAGTTAAGCCCACCagcacgtctgcttcctctcagactcaaacacaaCTCAAAGAGCTGTCCAAAACCCAGATGGAGGCCCCCAAGAACAACAAGCGAAagAGTAAGCCATCCCCCCTTTTGGATAGTGGCATCATCATCCTGAATGACACCGTTCCTGCTGCGAAACCGATCCATAATGAGGTGAAAGTGATCGCTCAGAATCATCACCAGGTGTCAGAAGAGCAGTCGTACTGCAAGTCAGTCGTAAAGAAGCAACAGAAGCAGGCACAGCTCTGTACGCTGCCCCGTCATCACCCTCTAATCAGAGAGGTGCACAGTGACGATGATGTGAACGTATATGTGGAGTTTGAgcaagaggagaaagaggagtgGGCGAAGCCACTGACCCAGCTGTGGCAGTGTCGGCCACATGACCCTCAGGCAGAGAGGAAGTACAACAAGAGCATGGGCCAGCAGGCCCCCTACTGCTCCATCTGCCTGCTCTTCCACACTTACCATCAGTCTGAGTCCAGTAGCGGGAGTTCCAGCGTCACGTTGTTGAACCGTAAAGGGGACCGCCAGTGGTCCAAGCCACTCATCCCTGAAGTCTGTTTCAACACCCAGTCCAGCAAGACGAATGATAACGGGGAGGGGCAGCTGTCCAACCCTCACGTAGCAGAGGACGGGACCAGCCAGCTGGTCAGCTGTGCTCAGTGCTGCGTCCGCGTACATACCAGTTGCTATGGGGTGTCAGCGGATGAAGCAGAGCTACACGACTGGCTGTGTGCCCGCTGTGAGGCTAATGCCGTCACCGAGgaCTGCTGTCTGTGTTCCTTGAGAGGCGGCGCTCTGCAGAGAGCCAACAATGACAAGTGGGTTCATGTGCTGTGTGCCATCACTGTGCTGGAAGCTCGCGTCAATAACGCGGACGCCCCCGTTGACCTCTCTGCAATCCCTCGCCGCTTCAGACTGAAGTGTGCGTACTGCAGGAAACGGATGAAGAGGGAGGTGAATGGCTGCTGTGTCCAGTGCTCCCACGGGCGCTGCTCAACGGCATTCCACCCCACCTGCGCTCAGGCAGCTGGTATCCTCATGCACCCGGATGACTGGCCGTTCATAGTCTTCATCACCTGCCACAGACACAGAGCGCCCCTCTTACCTGAGCGCAACGCGGCTTCCATGCGCGAGCTGGCAGTCGGGCAGAGGGTGATCTCGAAACACAAAAACGCCCGCTACTACCAATGCGACGTGGTGGAGCTGACCACGGCAACCTTCTACGAAGTAGTGTTCGACGACGGCTCCTACAGCGACAACCTCTTCCCAGAGGACATCGAGAACCGCGACTGCGTCCGGCTCGGTCCACCCGCCGAAGGTGATGCAGTTCAAGTGCGATGGACAGACGGGTTGATATATGGAGCCAAGTTTAAGGCATCGCACTCAATTCTTATGTACCTGgTGGAGTTTGAGGACGGATCACAAATCAGTGTCAAGCGAGACGACATCTACACTCTGGATGAGAATCTGCCCAAACGAGTCAAGTCACGAATGTCGGTGGCGTCAGACATGCGCTTCGAGCTCTTCTCGCAGAACGACGTCAAACAGAACTCCAAAAGGCAACGAGTCATCAACTCCCGATACAGAGAGGACTACATCGAGCCCATCATTTACCGAGCCATCATGGAGTGACGTCCCTTTttcatttctctctcctcctgcttTCCACCTCTCCTCTCCAAACCCTCCAAATCGTCAACCTGCGGCGGAGATAAGCAGCTCCAGATCTTTGTGTCTGTACTGCTGATAGGAACGACCAGCTAGGAACGACCAGCTTCCTcctcatttcttcttcttcttcttcttcttcttcttcttccacggCCTGTCAGGCTACATATTTATGAAATACGGCTGGGACTTAAAATGACTTTTGTGTGCGTTGAATAATGTTCTTTGACCTCCGTTAACCATCACGCTCTGTAGATTGTGTTTTCTTCCTTCATTTCcttatttgattttgtttctcaGGAAGAAGCCATCAGTGAATTATTAAATATGGAAAAGGTTGGACTatctttaacatttttttttttttttttttttctaccgcCACATTTAGCAGCTGTCAAGCAAACTTTGCATGTCATACATTGGACTTTTAGTGACATTTCTTCTATAACTTACCTTTTGCTCATACAGATGTTATTTTCATAATTTATGAAATTTTTGCAGTGAAGACAAATTGTGCTTGGGAATAAGGTTTTTAAAGGAAGCATTAACTTGGATCAGCTTTTCACTCATAAGGTTTAACGAAGGCAGAACTGGAAACTCTTAGCCAATCAGCTGTTGACTACAAAAACGATTTGATTAATCAAGAACTGTGTTAAGTTGTAACCCCaaagaaattaaataataatattaggtAACCTTTTGACAAATCTTCAGATTGTACCTATCACTCCCTCTGCACCATAAGTATTTCTTCCCATAGGTGTGTCTACTGTGAAGAATGAAGGAAACTAGACCTGTTTTCAAGGCCCAAgccttacattttaaagggcCAAGCATACTTTGGTTTTTCCAAACGCTTAAGGTTTATCATAACAATTGTAAGTAATGTTATTAATACACTTTATTTATGCAGTGAATGAGTTATGAGTGCATTGAGTTTGAAAAGAAAGCTATTTTTGTCACGTCCTTTTCACAATCTGTAGAAAACCTAAgatgtattttatatttattatattgatTGGTTTTCAGACATCCTGTTTTAAATTTAGAGATATCGGGATTGAGGGTGTGAATGCCAATCTGGCTCAGCTCCCTCCTTAGCAAAAaagcacttttctttttttttttttacctcctgCCACAGGACATTTACCATTTTTGTCAAAACATTGGCCTCCACTAAGATTAGTTTTTTTTGATGAAAGCTAGCTCTAGAGGCGATCGTTGTAACCAGGTTCTAGTTTGGTCCCAAATAAACGAAAAAGCGCTAAGAGGATCATTTTCAGACTCtggcaagttttattttttttatttcttcatgtTGAGTCATTTGTTTCTGCTTTTAATGCAGAGAAACGGTTTCTGAGTTCTCAGAAGGACCTaggcaagttttttttgttttgtttatttaactcATTAAACTCGTTTCAACTGTT

Function

NR:

description
PREDICTED: lysine-specific demethylase 4A-like isoform X3

GO: NA

KEGG:

id description
K06709 KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815919.1 True 5207 mRNA 0.47 25 34120583 34152780

Neighbor

gene id symbol gene type direction distance location
st3gal3b st3gal3,LOC106568968,LOC104920950 coding downstream 19917 34045998 ~ 34100666 (-)
LOC120567625 LOC104964778,LOC107104388,LOC103353835,LOC102303690,LOC102777524 coding downstream 86275 34008891 ~ 34034308 (-)
pif1 pif1 coding downstream 143768 33958019 ~ 33976815 (-)
nsun4 nsun4 coding downstream 165539 33949596 ~ 33955044 (-)
gadd45aa gadd45a,LOC105919244 coding downstream 259295 33858570 ~ 33861288 (-)
abhd8a LOC104920953,LOC104954835,LOC103352801 coding upstream 1137 34153917 ~ 34161671 (-)
ano8a LOC103395863,LOC103153027,LOC103479148,LOC106907894 coding upstream 20893 34173673 ~ 34202298 (-)
trnak-cuu_2 NA coding upstream 32236 34185016 ~ 34185088 (-)
plvapa NA coding upstream 58942 34211722 ~ 34219415 (-)
zgc:154006 LOC103367668 coding upstream 101275 34254055 ~ 34272635 (-)
G120096 NA non-coding downstream 82468 34037910 ~ 34038115 (-)
G120052 NA non-coding downstream 171389 33948520 ~ 33949194 (-)
G120039 NA non-coding downstream 266909 33830803 ~ 33853674 (-)
G120034 NA non-coding downstream 297000 33808520 ~ 33823583 (-)
G120016 LOC105920460,LOC103479125,LOC106958286,LOC103149535,LOC106904251,LOC108244512,LOC106529836 non-coding downstream 352804 33737498 ~ 33767779 (-)
G120150 NA non-coding upstream 54736 34207516 ~ 34207796 (-)
G120166 NA non-coding upstream 73238 34226018 ~ 34227413 (-)
G120173 NA non-coding upstream 81726 34234506 ~ 34234711 (-)
LOC120569054 LOC104920957 non-coding upstream 83636 34236416 ~ 34244121 (-)
G120325 NA non-coding upstream 415298 34568078 ~ 34568844 (-)
G119989 NA other downstream 461307 33654302 ~ 33659276 (-)
gfi1aa gfi1,LOC100698183,LOC101467858,LOC102203194,LOC102781835,LOC106958274 other downstream 471066 33645095 ~ 33649517 (-)
selenof selenof other downstream 686658 33421389 ~ 33433925 (-)
LOC120568437 NA other downstream 863646 33217190 ~ 33256937 (-)
zgc:66427 LOC103370245 other downstream 1132024 32979206 ~ 32988559 (-)
G120168 LOC105912833 other upstream 75846 34228626 ~ 34229050 (-)
G120230 NA other upstream 248043 34400823 ~ 34404013 (-)
LOC120568808 LOC103366832,LOC103395886,LOC104944844 other upstream 634388 34787168 ~ 34792767 (-)
G120390 NA other upstream 742799 34895579 ~ 34895913 (-)
LOC120567704 NA other upstream 858328 35011108 ~ 35014245 (-)

Expression


Co-expression Network